Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 4.0e-57 224.6 114 100.0
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 4.0e-57 224.6 114 100.0
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 5.4e-46 187.6 111 85.6
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 1.2e-45 186.4 111 86.5
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 6.6e-44 180.6 108 86.1
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 6.2e-42 174.1 113 79.6
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 6.4e-39 164.1 112 76.8
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 6.4e-39 164.1 112 76.8
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 1.1e-38 163.3 112 77.7
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 6.0e-37 157.5 112 74.1
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 1.3e-36 156.4 112 74.1
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 1.4e-33 146.4 112 70.5
BolC3t16642H Brassica oleracea HOM05D007866 ORTHO05D003871 2.3e-28 129.0 109 67.0
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 1.5e-19 99.8 99 61.6
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 1.0e-12 77.0 76 55.3
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 3.9e-12 75.1 70 52.9
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 3.9e-12 75.1 104 46.2
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 5.1e-12 74.7 112 48.2
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 1.1e-11 73.6 42 78.6
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 1.1e-11 73.6 42 78.6
Thecc.05G029400 Theobroma cacao HOM05D007866 ORTHO05D003871 1.9e-11 72.8 57 59.6
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 2.5e-11 72.4 119 39.5
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 3.3e-11 72.0 41 75.6
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 4.3e-11 71.6 50 68.0
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 4.3e-11 71.6 98 46.9
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 4.3e-11 71.6 98 46.9
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 7.4e-11 70.9 64 56.2
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 9.6e-11 70.5 130 39.2
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 1.3e-10 70.1 111 43.2
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.3e-10 70.1 111 43.2
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 1.6e-10 69.7 58 58.6
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 1.6e-10 69.7 59 57.6
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 2.1e-10 69.3 101 42.6
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 2.8e-10 68.9 57 56.1
COL.COLO4_14698 Corchorus olitorius HOM05D007866 ORTHO05D003871 2.8e-10 68.9 41 73.2
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 2.8e-10 68.9 44 70.5
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 4.8e-10 68.2 52 57.7
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 4.8e-10 68.2 67 56.7
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 4.8e-10 68.2 76 56.6
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 6.2e-10 67.8 51 60.8
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 1.4e-09 66.6 41 70.7
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 1.4e-09 66.6 52 55.8
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 1.8e-09 66.2 39 74.4
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 1.8e-09 66.2 52 53.8
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 2.4e-09 65.9 86 48.8
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 2.4e-09 65.9 77 42.9
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 2.4e-09 65.9 81 45.7
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 3.1e-09 65.5 75 45.3
MELO3C003184.2 Cucumis melo HOM05D007866 ORTHO05D003871 4.0e-09 65.1 67 52.2
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 4.0e-09 65.1 50 64.0
Peaxi162Scf00014g00168 Petunia axillaris HOM05D007866 ORTHO05D003871 4.0e-09 65.1 41 63.4
Gohir.A09G152500 Gossypium hirsutum HOM05D007866 ORTHO05D003871 5.3e-09 64.7 51 62.7
Gorai.006G169200 Gossypium raimondii HOM05D007866 ORTHO05D003871 5.3e-09 64.7 51 62.7
Psat7g241400 Pisum sativum HOM05D007866 ORTHO05D003871 5.3e-09 64.7 54 57.4
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 5.3e-09 64.7 58 58.6
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 6.9e-09 64.3 87 43.7
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 6.9e-09 64.3 59 50.8
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 9.0e-09 63.9 51 62.7
Gohir.D09G148200 Gossypium hirsutum HOM05D007866 ORTHO05D003871 9.0e-09 63.9 39 74.4
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 9.0e-09 63.9 49 59.2
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 1.2e-08 63.5 58 58.6
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 1.2e-08 63.5 91 40.7
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 1.5e-08 63.2 60 58.3
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 1.5e-08 63.2 39 76.9
Eucgr.B02728 Eucalyptus grandis HOM05D007866 ORTHO05D003871 2.0e-08 62.8 39 74.4
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 2.0e-08 62.8 87 42.5
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 2.0e-08 62.8 49 63.3
Potri.016G103700 Populus trichocarpa HOM05D007866 ORTHO05D003871 2.0e-08 62.8 45 62.2
VMungo0331G0444 Vigna mungo HOM05D007866 ORTHO05D003871 2.6e-08 62.4 49 59.2
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 3.4e-08 62.0 54 51.9
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 3.4e-08 62.0 54 63.0
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 4.5e-08 61.6 73 43.8
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 4.5e-08 61.6 61 52.5
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 4.5e-08 61.6 70 48.6
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 4.5e-08 61.6 57 57.9
Phvul.010G009300 Phaseolus vulgaris HOM05D007866 ORTHO05D003871 5.8e-08 61.2 48 58.3
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 7.6e-08 60.8 84 38.1
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 7.6e-08 60.8 70 48.6
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 9.9e-08 60.5 46 54.3
PGR031G1324 Punica granatum HOM05D007866 ORTHO05D003871 9.9e-08 60.5 63 46.0
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 9.9e-08 60.5 92 41.3
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 1.3e-07 60.1 77 45.5
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 1.3e-07 60.1 109 38.5
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.3e-07 60.1 54 61.1
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 1.3e-07 60.1 54 61.1
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 1.7e-07 59.7 108 40.7
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 1.7e-07 59.7 72 50.0
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.7e-07 59.7 53 60.4
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 2.9e-07 58.9 58 56.9
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 2.9e-07 58.9 74 40.5
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 2.9e-07 58.9 54 61.1
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 2.9e-07 58.9 104 38.5
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 3.8e-07 58.5 51 56.9
Medtr4g019600 Medicago truncatula HOM05D007866 ORTHO05D003871 3.8e-07 58.5 90 41.1
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 3.8e-07 58.5 86 41.9
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 4.9e-07 58.2 35 80.0
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 6.4e-07 57.8 50 62.0
ClCG04G007660 Citrullus lanatus HOM05D007866 ORTHO05D003871 6.4e-07 57.8 42 61.9
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 6.4e-07 57.8 50 56.0
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 6.4e-07 57.8 50 56.0
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 6.4e-07 57.8 58 55.2
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 6.4e-07 57.8 76 46.1
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 6.4e-07 57.8 34 82.4
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 8.4e-07 57.4 75 42.7
arahy.Tifrunner.gnm1.ann1.UGPP85 Arachis hypogaea HOM05D007866 ORTHO05D003871 1.1e-06 57.0 34 76.5
DCAR_010424 Daucus carota HOM05D007866 ORTHO05D003871 1.1e-06 57.0 91 38.5
Glyma.03G073100 Glycine max HOM05D007866 ORTHO05D003871 1.1e-06 57.0 77 44.2
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.1e-06 57.0 107 39.3
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.1e-06 57.0 107 39.3
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 1.1e-06 57.0 40 67.5
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 1.4e-06 56.6 60 48.3
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 1.9e-06 56.2 72 44.4
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 1.9e-06 56.2 75 45.3
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 2.4e-06 55.8 53 56.6
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 3.2e-06 55.5 57 50.9
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 3.2e-06 55.5 53 56.6
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 3.2e-06 55.5 72 48.6
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 3.2e-06 55.5 53 56.6
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 3.2e-06 55.5 69 49.3
MBI02_g35323_MAGBIO Magnolia biondii HOM05D007866 ORTHO05D003871 3.2e-06 55.5 72 40.3
Glyma.01G105300 Glycine max HOM05D007866 ORTHO05D003871 4.2e-06 55.1 49 57.1
Lsat_1_v5_gn_8_84120 Lactuca sativa HOM05D007866 ORTHO05D003871 5.5e-06 54.7 98 36.7
MD09G1102100 Malus domestica HOM05D007156 ORTHO05D003871 5.5e-06 54.7 52 50.0
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 5.5e-06 54.7 53 54.7
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 5.5e-06 54.7 70 41.4
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 5.5e-06 54.7 53 56.6
Ca_01559_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 7.1e-06 54.3 54 55.6
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 7.1e-06 54.3 57 47.4
SGA_v2.0_scaffold70G23435 Striga asiatica HOM05D007156 ORTHO05D003871 7.1e-06 54.3 72 43.1
ClCG02G011170 Citrullus lanatus HOM05D007156 ORTHO05D003871 9.3e-06 53.9 65 43.1
Psat5g266920 Pisum sativum HOM05D007156 ORTHO05D003871 9.3e-06 53.9 52 51.9
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 9.3e-06 53.9 62 43.5


User provided reference genes

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