Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18531 Brassica carinata HOM05D006098 ORTHO05D007470 1.3e-252 875.9 462 100.0
A08p14200 Brassica napus HOM05D006098 ORTHO05D007470 9.7e-187 657.1 467 78.6
BraA08t33414Z Brassica rapa HOM05D006098 ORTHO05D007470 9.7e-187 657.1 467 78.6
BolC3t20457H Brassica oleracea HOM05D006098 ORTHO05D007470 1.5e-182 643.3 468 77.1
BcaC01g00601 Brassica carinata HOM05D006098 ORTHO05D007470 1.2e-181 640.2 455 78.2
C03p81800 Brassica napus HOM05D006098 ORTHO05D007470 1.5e-179 633.3 453 77.3
BcaNung04007 Brassica carinata HOM05D006098 ORTHO05D007470 1.4e-169 600.1 473 70.6
Sp7g17860 Schrenkiella parvula HOM05D006098 ORTHO05D007470 1.7e-162 576.6 485 69.9
BcaC09g51434 Brassica carinata HOM05D006098 ORTHO05D007470 1.7e-159 566.6 467 71.3
A01p11120 Brassica napus HOM05D006098 ORTHO05D007470 6.6e-159 564.7 471 71.8
C01p13160 Brassica napus HOM05D006098 ORTHO05D007470 4.3e-158 562.0 468 71.2
BraA01t01058Z Brassica rapa HOM05D006098 ORTHO05D007470 9.5e-158 560.8 466 69.7
BolC1t01289H Brassica oleracea HOM05D006098 ORTHO05D007470 1.4e-156 557.0 472 70.1
Thhalv10025127m.g Eutrema salsugineum HOM05D006098 ORTHO05D007470 1.8e-148 530.0 476 66.8
AL7G34930 Arabidopsis lyrata HOM05D006098 ORTHO05D007470 1.7e-143 513.5 476 64.7
AT4G19160 Arabidopsis thaliana HOM05D006098 ORTHO05D007470 5.6e-142 508.4 478 64.6
Carub.0007s2199 Capsella rubella HOM05D006098 ORTHO05D007470 2.0e-139 500.0 478 62.6
CARHR226030 Cardamine hirsuta HOM05D006098 ORTHO05D007470 3.6e-133 479.2 498 61.2
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 7.6e-123 444.9 472 57.8
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 1.1e-121 441.0 478 57.1
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 2.4e-113 413.3 441 55.3
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 1.6e-112 410.6 403 58.8
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 3.0e-111 406.4 384 58.9
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 5.1e-111 405.6 394 57.6
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 6.7e-111 405.2 403 57.1
Actinidia01257 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.4e-108 397.5 389 57.8
Gorai.004G178500 Gossypium raimondii HOM05D006098 ORTHO05D007470 1.4e-108 397.5 406 55.4
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.2e-107 394.4 402 55.5
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 2.0e-107 393.7 419 53.7
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 2.6e-107 393.3 413 54.5
Gohir.A08G150000 Gossypium hirsutum HOM05D006098 ORTHO05D007470 3.4e-107 392.9 427 53.4
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 5.8e-107 392.1 388 57.2
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 1.7e-106 390.6 397 55.7
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 2.2e-106 390.2 379 57.8
Ah.12g058500 Amaranthus hybridus HOM05D006098 ORTHO05D007470 2.9e-106 389.8 449 51.9
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 1.1e-105 387.9 450 51.6
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 1.1e-105 387.9 440 52.0
EL10Ac5g12579 Beta vulgaris HOM05D006098 ORTHO05D007470 2.5e-105 386.7 428 53.3
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 2.5e-105 386.7 396 53.8
Sabra01G0135500 Salix brachista HOM05D006098 ORTHO05D007470 2.5e-105 386.7 384 56.5
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 5.5e-105 385.6 397 54.9
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 5.5e-105 385.6 396 54.5
Rhsim11G0034900 Rhododendron simsii HOM05D006098 ORTHO05D007470 5.5e-105 385.6 397 54.9
TAR629G3250 Trochodendron aralioides HOM05D006098 ORTHO05D007470 5.5e-105 385.6 447 49.9
CSS0030969 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 7.1e-105 385.2 397 55.2
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 7.1e-105 385.2 383 55.9
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 7.1e-105 385.2 463 51.4
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.2e-104 384.4 401 54.9
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 1.2e-104 384.4 373 57.1
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 2.1e-104 383.6 401 54.4
Atru.chr8.2640 Acer truncatum HOM05D006098 ORTHO05D007470 2.7e-104 383.3 476 49.2
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 2.7e-104 383.3 450 51.6
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 4.6e-104 382.5 448 51.1
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 7.9e-104 381.7 395 55.2
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 7.9e-104 381.7 394 55.1
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 1.3e-103 380.9 404 54.7
CAN.G884.14 Capsicum annuum HOM05D006098 ORTHO05D007470 1.8e-103 380.6 404 53.0
GSVIVG01036872001 Vitis vinifera HOM05D006098 ORTHO05D007470 1.8e-103 380.6 454 51.5
Peaxi162Scf00045g00071 Petunia axillaris HOM05D006098 ORTHO05D007470 1.5e-102 377.5 418 50.7
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 1.9e-102 377.1 381 54.9
Dinv37422 Davidia involucrata HOM05D006098 ORTHO05D007470 2.5e-102 376.7 365 56.7
MSTRG.1762 Avicennia marina HOM05D006098 ORTHO05D007470 3.3e-102 376.3 401 52.9
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 3.3e-102 376.3 418 51.2
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 5.7e-102 375.6 414 52.7
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 5.7e-102 375.6 394 53.8
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 9.6e-102 374.8 394 53.6
FAN15G0890 Fragaria x ananassa HOM05D006098 ORTHO05D007470 1.3e-101 374.4 443 51.7
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 1.6e-101 374.0 381 55.9
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 2.1e-101 373.6 385 55.3
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 2.8e-101 373.2 404 53.0
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 3.7e-101 372.9 395 55.7
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 6.3e-101 372.1 434 50.5
Rhsim11G0035500 Rhododendron simsii HOM05D006098 ORTHO05D007470 6.3e-101 372.1 437 50.1
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 6.3e-101 372.1 394 53.6
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 1.4e-100 370.9 394 53.8
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 3.1e-100 369.8 415 52.0
Peaxi162Scf00053g00062 Petunia axillaris HOM05D006098 ORTHO05D007470 6.9e-100 368.6 401 52.4
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 9.0e-100 368.2 392 52.8
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.5e-99 367.5 401 53.1
MBI15_g33454_MAGBIO Magnolia biondii HOM05D006098 ORTHO05D007470 2.6e-99 366.7 393 53.7
Solyc08g075520.4 Solanum lycopersicum HOM05D006098 ORTHO05D007470 1.0e-98 364.8 410 51.0
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 1.3e-98 364.4 420 50.5
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.7e-98 364.0 401 52.4
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 6.5e-98 362.1 421 51.3
CAN.G1026.8 Capsicum annuum HOM05D006098 ORTHO05D007470 1.1e-97 361.3 410 50.5
Lsat_1_v5_gn_5_57121 Lactuca sativa HOM05D006098 ORTHO05D007470 1.4e-97 360.9 409 51.8
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 6.1e-96 355.5 452 50.0
Nitab4.5_0001175g0140 Nicotiana tabacum HOM05D006098 ORTHO05D007470 7.9e-96 355.1 465 46.5
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.0e-95 354.8 373 54.4
Duzib068G0239 Durio zibethinus HOM05D006098 ORTHO05D007470 6.7e-95 352.1 459 49.0
Gohir.D12G205100 Gossypium hirsutum HOM05D006098 ORTHO05D007470 6.7e-95 352.1 335 58.2
ATR0568G039 Amborella trichopoda HOM05D006098 ORTHO05D007470 1.3e-93 347.8 394 52.0
Gohir.A12G202400 Gossypium hirsutum HOM05D006098 ORTHO05D007470 1.3e-93 347.8 335 57.9
PSO541G2197 Papaver somniferum HOM05D006098 ORTHO05D007470 8.2e-93 345.1 400 49.5
Sabra03G0019100 Salix brachista HOM05D006098 ORTHO05D007470 6.9e-92 342.0 473 44.8
CDE01G0744 Ceratophyllum demersum HOM05D006098 ORTHO05D007470 9.1e-92 341.7 448 46.7
unitig_37.g12121 Utricularia gibba HOM05D006098 ORTHO05D007470 1.2e-91 341.3 373 52.5
PSO675G7908 Papaver somniferum HOM05D006098 ORTHO05D007470 3.4e-91 339.7 457 46.4
SEGI_14227 Sequoiadendron giganteum HOM05D006098 ORTHO05D007470 5.7e-86 322.4 377 48.5
Manes.17G016300 Manihot esculenta HOM05D006098 ORTHO05D007470 6.3e-85 318.9 331 53.8
SalBow8G2199 Salvia bowleyana HOM05D006098 ORTHO05D007470 4.7e-80 302.8 393 48.1
Sopen08g024170 Solanum pennellii HOM05D006098 ORTHO05D007470 5.7e-78 295.8 343 49.0
PGSC0003DMG400016110 Solanum tuberosum HOM05D006098 ORTHO05D007470 1.7e-77 294.3 343 49.3
Peaxi162Scf00876g00435 Petunia axillaris HOM05D006098 ORTHO05D007470 5.0e-74 282.7 379 47.8
Gohir.D08G171101 Gossypium hirsutum HOM05D006098 ORTHO05D007470 9.7e-70 268.5 248 56.0
CAN.G947.35 Capsicum annuum HOM05D006098 ORTHO05D007470 8.5e-66 255.4 340 46.2
FAN27G0800 Fragaria x ananassa HOM05D006098 ORTHO05D007470 2.1e-64 250.8 297 50.5
MSTRG.13909 Avicennia marina HOM05D006098 ORTHO05D007470 2.7e-59 233.8 255 52.5
AagrBONN_evm.TU.Sc2ySwM_368.631 Anthoceros agrestis HOM05D006098 ORTHO05D007470 4.5e-51 206.5 406 35.5
Pp3c12_14620 Physcomitrium patens HOM05D006098 ORTHO05D007470 9.2e-44 182.2 411 32.6
FvH4_2g37180 Fragaria vesca HOM05D006098 ORTHO05D007470 4.7e-40 169.9 141 61.7
HanXRQChr05g0158621 Helianthus annuus HOM05D006098 ORTHO05D007470 1.3e-34 151.8 141 61.7
HanXRQChr09g0271561 Helianthus annuus HOM05D006098 ORTHO05D007470 3.0e-34 150.6 121 62.0
SMO364G0549 Selaginella moellendorffii HOM05D006098 ORTHO05D007470 1.5e-33 148.3 463 28.3
HanXRQChr11g0344761 Helianthus annuus HOM05D006098 ORTHO05D007470 1.0e-26 125.6 122 57.4
Oeu042198.1 Olea europaea HOM05D006098 ORTHO05D007470 3.6e-24 117.1 240 36.7
Pp3c4_2130 Physcomitrium patens HOM05D006098 ORTHO05D007470 8.1e-24 115.9 316 28.8
Oeu015533.1 Olea europaea HOM05D006098 ORTHO05D007470 1.1e-23 115.5 119 49.6
Eucgr.D02550 Eucalyptus grandis HOM05D006098 ORTHO05D007470 3.1e-23 114.0 169 42.6
Hund11040 Selenicereus undatus HOM05D006098 ORTHO05D007470 1.7e-21 108.2 139 47.5
Eucgr.D02551 Eucalyptus grandis HOM05D006098 ORTHO05D007470 8.7e-18 95.9 100 59.0
Rhsim11G0035700 Rhododendron simsii HOM05D006098 ORTHO05D007470 1.6e-16 91.7 178 38.8
Cre14.g621850 Chlamydomonas reinhardtii HOM05D006098 ORTHO05D007470 2.8e-16 90.9 246 29.7
Peaxi162Scf00527g00718 Petunia axillaris HOM05D006098 ORTHO05D007470 8.1e-16 89.4 207 30.9
RcHm_v2.0_Chr4g0402301 Rosa chinensis HOM05D006098 ORTHO05D007470 8.1e-16 89.4 114 44.7
Aa31sc19G30 Aethionema arabicum HOM05D006098 ORTHO05D007470 1.7e-13 81.6 226 32.3
HanXRQChr11g0344831 Helianthus annuus HOM05D006098 ORTHO05D007470 1.2e-11 75.5 78 52.6
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 6.0e-11 73.2 219 26.0
AUR62032647 Chenopodium quinoa HOM05D007414 ORTHO05D009482 2.8e-08 64.3 219 25.1
AUR62026859 Chenopodium quinoa HOM05D007414 ORTHO05D009482 6.2e-08 63.2 219 24.7
Aa31LG3G3710 Aethionema arabicum HOM05D006098 ORTHO05D007470 3.1e-07 60.8 61 54.1
MCO08G142 Micromonas commoda HOM05D020588 ORTHO05D021297 4.0e-07 60.5 118 28.0
CsaV3_5G024500 Cucumis sativus L. HOM05D007414 ORTHO05D009482 2.6e-06 57.8 225 24.4
Sed0006433 Sechium edule HOM05D007414 ORTHO05D009482 9.9e-06 55.8 228 23.2


User provided reference genes

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