Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 1.0e-124 450.3 267 100.0
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 7.8e-96 354.4 267 76.0
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 8.6e-95 350.9 265 76.6
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 4.3e-94 348.6 265 75.8
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 1.4e-92 343.6 269 74.3
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 1.4e-92 343.6 269 74.3
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 9.9e-91 337.4 269 73.2
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 2.8e-85 319.3 268 67.9
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 1.1e-84 317.4 277 66.1
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 8.9e-84 314.3 270 66.7
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.6e-83 312.8 272 66.5
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 5.8e-83 311.6 272 65.1
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.7e-79 300.1 277 64.3
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 6.0e-72 275.0 252 60.7
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 2.3e-71 273.1 266 58.6
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 5.1e-71 271.9 267 57.7
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.1e-69 266.5 267 56.9
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 4.8e-69 265.4 266 56.8
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.8e-68 263.5 275 56.0
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 4.0e-68 262.3 267 56.6
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 1.5e-67 260.4 268 56.0
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 1.5e-67 260.4 264 56.4
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 2.6e-67 259.6 268 55.6
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 2.6e-67 259.6 268 55.6
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 4.5e-67 258.8 229 60.3
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 7.6e-67 258.1 268 55.6
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 1.9e-65 253.4 269 54.3
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 7.1e-65 251.5 227 67.8
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 2.5e-62 243.0 274 53.3
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 4.8e-61 238.8 259 52.1
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 8.1e-61 238.0 231 53.7
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 1.4e-60 237.3 258 50.4
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 5.3e-60 235.3 229 53.7
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 6.9e-60 235.0 249 51.0
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 9.0e-60 234.6 269 49.1
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 9.0e-60 234.6 255 51.0
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 1.2e-59 234.2 237 52.3
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.2e-59 234.2 250 50.4
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 2.6e-59 233.0 237 51.9
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 4.5e-59 232.3 239 54.0
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 5.8e-59 231.9 230 53.9
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 7.6e-59 231.5 240 52.5
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 1.0e-58 231.1 237 51.5
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 1.7e-58 230.3 253 49.8
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.8e-58 229.2 235 50.2
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 3.8e-58 229.2 258 49.2
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 8.4e-58 228.0 234 50.0
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.1e-57 227.6 262 50.0
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 2.5e-57 226.5 223 54.3
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 2.5e-57 226.5 272 47.1
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 4.2e-57 225.7 259 48.3
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 4.2e-57 225.7 259 48.3
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 5.5e-57 225.3 269 47.6
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 7.1e-57 224.9 259 48.3
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 9.3e-57 224.6 238 52.1
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 9.3e-57 224.6 224 54.0
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 1.2e-56 224.2 240 51.7
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 1.2e-56 224.2 224 53.1
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 2.1e-56 223.4 269 48.3
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 2.7e-56 223.0 238 52.1
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 3.5e-56 222.6 265 49.1
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 4.6e-56 222.2 226 51.3
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 4.6e-56 222.2 265 49.8
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 1.0e-55 221.1 229 52.4
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 1.3e-55 220.7 222 50.9
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 1.3e-55 220.7 226 52.2
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 1.3e-55 220.7 256 48.0
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 2.3e-55 219.9 229 50.7
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 3.0e-55 219.5 240 48.3
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 5.1e-55 218.8 272 46.3
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 6.7e-55 218.4 223 50.7
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 8.7e-55 218.0 224 50.4
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 1.1e-54 217.6 251 49.4
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 1.5e-54 217.2 228 50.9
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 1.9e-54 216.9 229 49.8
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 1.9e-54 216.9 255 49.0
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 1.9e-54 216.9 257 47.5
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 4.3e-54 215.7 267 50.2
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 4.3e-54 215.7 230 49.6
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 5.7e-54 215.3 226 51.8
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 5.7e-54 215.3 265 46.4
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 7.4e-54 214.9 237 50.6
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 9.6e-54 214.5 234 47.9
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 1.3e-53 214.2 260 47.3
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 1.3e-53 214.2 255 46.3
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.3e-53 214.2 222 51.8
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 3.7e-53 212.6 224 50.0
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 8.2e-53 211.5 250 46.4
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 1.4e-52 210.7 222 47.7
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.8e-52 210.3 263 47.5
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 3.1e-52 209.5 225 52.4
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 4.1e-52 209.1 227 58.6
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 9.0e-52 208.0 255 46.7
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 1.5e-51 207.2 259 45.9
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 2.6e-51 206.5 243 46.5
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 4.5e-51 205.7 278 44.2
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 4.5e-51 205.7 278 44.2
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 4.5e-51 205.7 259 45.6
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 5.9e-51 205.3 226 48.2
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 7.6e-51 204.9 226 48.2
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.0e-50 204.5 228 50.0
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 1.7e-50 203.8 242 46.3
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 2.2e-50 203.4 210 51.9
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 3.8e-50 202.6 206 51.9
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 1.1e-49 201.1 240 45.4
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 1.4e-49 200.7 228 48.2
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.9e-49 200.3 226 48.2
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 2.5e-49 199.9 252 47.2
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 2.5e-49 199.9 206 50.0
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.5e-48 196.1 266 44.0
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 6.1e-48 195.3 152 59.9
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 7.9e-48 194.9 242 45.9
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.0e-47 194.5 224 44.2
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 6.7e-47 191.8 206 47.6
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 8.7e-47 191.4 224 45.1
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 8.7e-47 191.4 227 45.8
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 1.5e-46 190.7 254 44.1
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 1.3e-45 187.6 219 46.6
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 1.3e-45 187.6 286 41.3
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.6e-45 187.2 248 43.5
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 2.2e-45 186.8 234 45.7
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 6.3e-45 185.3 242 43.8
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 1.1e-44 184.5 228 44.3
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 2.4e-44 183.3 228 44.3
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 2.0e-43 180.3 229 45.0
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 3.4e-43 179.5 272 39.3
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 1.3e-42 177.6 241 40.2
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 2.2e-42 176.8 149 55.0
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 5.0e-42 175.6 186 43.5
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.1e-40 170.2 197 46.7
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 7.9e-40 168.3 186 47.8
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.5e-38 164.1 213 44.6
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.2e-35 154.5 234 41.9
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 4.5e-35 152.5 236 40.3
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 2.1e-32 143.7 154 44.8
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 1.0e-31 141.4 112 56.2
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 2.3e-31 140.2 124 52.4
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.8e-28 130.6 154 39.0
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.2e-27 127.9 154 38.3
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 1.6e-27 127.5 222 32.9
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.6e-27 126.7 370 31.4
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.9e-25 120.6 268 33.2
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 5.5e-25 119.0 90 60.0
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 1.2e-24 117.9 218 32.1
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 1.8e-23 114.0 139 48.2
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 1.1e-20 104.8 132 45.5
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 5.0e-18 95.9 107 43.9
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 3.2e-17 93.2 79 55.7
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 4.8e-13 79.3 108 46.3
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 6.3e-13 79.0 108 46.3
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 4.1e-12 76.3 74 45.9
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 2.9e-10 70.1 73 47.9
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 3.0e-07 60.1 185 28.1
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 4.4e-06 56.2 116 32.8
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 5.7e-06 55.8 39 56.4


User provided reference genes

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