Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 2.1e-45 185.3 91 100.0
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 3.7e-37 157.9 91 85.7
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 4.5e-35 151.0 89 83.1
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 7.6e-35 150.2 90 80.0
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 1.7e-34 149.1 90 81.1
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 2.4e-33 145.2 79 91.1
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 2.4e-33 145.2 79 91.1
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 2.4e-33 145.2 79 91.1
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 7.6e-19 97.1 88 55.7
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.9e-17 92.4 81 54.3
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 1.9e-17 92.4 90 51.1
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.2e-17 91.3 81 54.3
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 5.5e-17 90.9 81 54.3
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 1.6e-16 89.4 82 56.1
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 2.7e-16 88.6 81 51.9
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 6.1e-16 87.4 88 51.1
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 7.9e-16 87.0 89 47.2
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.4e-15 86.3 77 53.2
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.8e-15 85.9 74 56.8
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 2.3e-15 85.5 84 52.4
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 3.0e-15 85.1 89 50.6
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 6.7e-15 84.0 93 48.4
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 1.5e-14 82.8 85 48.2
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 2.5e-14 82.0 93 47.3
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 2.5e-14 82.0 87 49.4
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 3.3e-14 81.6 93 49.5
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 5.7e-14 80.9 94 47.9
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 9.7e-14 80.1 95 43.2
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 9.7e-14 80.1 81 51.9
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.3e-13 79.7 86 53.5
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.3e-13 79.7 88 46.6
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.3e-13 79.7 95 43.2
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 1.3e-13 79.7 86 47.7
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 1.7e-13 79.3 86 45.3
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 1.7e-13 79.3 95 48.4
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 1.7e-13 79.3 68 54.4
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.7e-13 79.3 68 54.4
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 2.2e-13 79.0 88 52.3
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 2.8e-13 78.6 73 50.7
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 3.7e-13 78.2 88 47.7
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 3.7e-13 78.2 83 44.6
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 6.3e-13 77.4 81 53.1
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 6.3e-13 77.4 89 43.8
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 8.2e-13 77.0 84 51.2
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 8.2e-13 77.0 68 57.4
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 1.1e-12 76.6 75 48.0
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 1.1e-12 76.6 75 49.3
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 1.8e-12 75.9 61 54.1
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 1.8e-12 75.9 77 46.8
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.8e-12 75.9 61 60.7
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 1.8e-12 75.9 74 50.0
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 1.8e-12 75.9 85 47.1
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 2.4e-12 75.5 85 50.6
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.4e-12 75.5 58 53.4
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 2.4e-12 75.5 75 46.7
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 3.1e-12 75.1 84 50.0
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 3.1e-12 75.1 61 57.4
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 3.1e-12 75.1 85 44.7
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 4.1e-12 74.7 61 60.7
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 4.1e-12 74.7 86 51.2
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 4.1e-12 74.7 85 47.1
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 4.1e-12 74.7 90 41.1
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 6.9e-12 73.9 75 54.7
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 9.1e-12 73.6 80 50.0
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 9.1e-12 73.6 77 48.1
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 9.1e-12 73.6 91 41.8
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 9.1e-12 73.6 91 41.8
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 9.1e-12 73.6 93 45.2
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 9.1e-12 73.6 74 48.6
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.2e-11 73.2 81 42.0
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 1.2e-11 73.2 86 43.0
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 1.2e-11 73.2 70 55.7
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.5e-11 72.8 96 46.9
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 1.5e-11 72.8 80 45.0
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 2.0e-11 72.4 81 43.2
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 2.0e-11 72.4 76 48.7
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 2.0e-11 72.4 66 51.5
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 2.6e-11 72.0 81 43.2
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 2.6e-11 72.0 76 50.0
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 3.4e-11 71.6 74 45.9
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 4.5e-11 71.2 85 44.7
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 4.5e-11 71.2 77 45.5
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 5.9e-11 70.9 76 46.1
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 5.9e-11 70.9 70 54.3
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 7.7e-11 70.5 82 45.1
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.7e-10 69.3 60 51.7
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.7e-10 69.3 81 46.9
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 1.7e-10 69.3 83 44.6
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 1.7e-10 69.3 90 42.2
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 1.7e-10 69.3 90 42.2
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 2.9e-10 68.6 99 40.4
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 3.8e-10 68.2 87 40.2
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 3.8e-10 68.2 90 45.6
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 5.0e-10 67.8 93 47.3
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.4e-09 66.2 86 39.5
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.4e-09 66.2 95 42.1
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 1.4e-09 66.2 89 41.6
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 1.9e-09 65.9 77 46.8
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.9e-09 65.9 81 39.5
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.9e-09 65.9 77 49.4
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 2.5e-09 65.5 76 50.0
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 2.5e-09 65.5 80 47.5
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 2.5e-09 65.5 75 45.3
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 2.5e-09 65.5 91 38.5
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 3.2e-09 65.1 71 42.3
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 5.5e-09 64.3 77 42.9
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 5.5e-09 64.3 72 45.8
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 7.2e-09 63.9 71 43.7
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 9.4e-09 63.5 64 45.3
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 9.4e-09 63.5 77 42.9
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 9.4e-09 63.5 77 42.9
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 9.4e-09 63.5 76 47.4
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 1.2e-08 63.2 83 41.0
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.1e-08 62.4 66 48.5
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.1e-08 62.4 66 48.5
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 2.1e-08 62.4 82 43.9
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 2.7e-08 62.0 62 48.4
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 2.7e-08 62.0 59 57.6
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 3.6e-08 61.6 72 41.7
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.6e-08 61.6 94 40.4
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 3.6e-08 61.6 61 49.2
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 6.1e-08 60.8 64 48.4
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 7.9e-08 60.5 69 44.9
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 7.9e-08 60.5 74 47.3
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.0e-07 60.1 68 41.2
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.0e-07 60.1 80 38.8
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.0e-07 60.1 77 41.6
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 1.4e-07 59.7 66 48.5
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.8e-07 59.3 83 39.8
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.8e-07 59.3 66 47.0
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 2.3e-07 58.9 67 49.3
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 3.0e-07 58.5 80 45.0
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 3.0e-07 58.5 49 65.3
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 3.9e-07 58.2 61 42.6
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 3.9e-07 58.2 78 39.7
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 5.1e-07 57.8 83 44.6
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 1.1e-06 56.6 85 37.6
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.5e-06 56.2 48 56.2
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 4.4e-06 54.7 59 45.8
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 4.4e-06 54.7 88 40.9
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 7.4e-06 53.9 61 41.0


User provided reference genes

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