Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 5.3e-89 331.6 259 100.0
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 6.2e-66 255.0 265 83.8
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 1.5e-64 250.4 264 82.6
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 3.8e-63 245.7 264 82.2
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 9.3e-62 241.1 180 75.6
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 1.8e-60 236.9 183 75.4
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 8.2e-58 228.0 186 72.6
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 1.3e-47 194.1 187 69.0
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 1.2e-45 187.6 182 67.0
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 6.7e-44 181.8 280 73.9
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 7.4e-43 178.3 188 65.4
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 7.0e-41 171.8 179 63.7
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 5.9e-40 168.7 187 64.2
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 1.1e-38 164.5 179 64.2
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 5.5e-38 162.2 181 64.6
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 1.4e-36 157.5 183 62.8
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 3.9e-36 156.0 183 62.8
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 3.9e-36 156.0 190 54.7
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 9.7e-35 151.4 179 62.0
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.7e-34 150.6 190 52.1
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 7.2e-22 108.6 192 44.8
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 1.4e-20 104.4 219 38.4
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 5.2e-20 102.4 192 41.1
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 1.5e-19 100.9 199 40.7
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 2.6e-19 100.1 199 38.7
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 2.6e-19 100.1 201 40.3
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 5.7e-19 99.0 204 38.7
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 1.4e-17 94.4 215 39.5
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 2.4e-17 93.6 200 41.5
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 2.4e-17 93.6 204 37.3
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 3.1e-17 93.2 205 38.0
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 7.0e-17 92.0 197 40.1
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 1.6e-16 90.9 192 41.1
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 4.5e-16 89.4 193 41.5
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 1.3e-15 87.8 173 35.8
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 2.9e-15 86.7 135 43.0
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 3.8e-15 86.3 135 44.4
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 5.0e-15 85.9 190 39.5
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 8.6e-15 85.1 196 42.3
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 1.1e-14 84.7 156 39.1
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 1.5e-14 84.3 177 40.1
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 1.5e-14 84.3 156 39.1
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 1.9e-14 84.0 190 35.8
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 4.2e-14 82.8 210 35.7
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 4.2e-14 82.8 156 38.5
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 1.6e-13 80.9 183 37.7
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.6e-13 80.9 202 34.7
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.6e-13 80.9 202 35.6
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 2.1e-13 80.5 214 34.6
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 2.8e-13 80.1 190 35.3
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.6e-13 79.7 142 42.3
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.6e-13 79.7 186 41.9
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 3.6e-13 79.7 137 49.6
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 4.7e-13 79.3 191 36.6
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 6.1e-13 79.0 202 35.1
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 8.0e-13 78.6 177 37.9
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 8.0e-13 78.6 196 40.3
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.0e-12 78.2 191 36.1
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 3.0e-12 76.6 191 38.2
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 3.0e-12 76.6 190 34.7
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 4.0e-12 76.3 202 33.2
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 5.2e-12 75.9 166 37.3
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 5.2e-12 75.9 204 36.3
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 5.2e-12 75.9 189 37.0
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 6.8e-12 75.5 224 37.5
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 1.2e-11 74.7 186 35.5
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 1.5e-11 74.3 202 38.1
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 2.6e-11 73.6 115 44.3
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 7.5e-11 72.0 207 34.3
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 3.7e-10 69.7 186 35.5
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 3.7e-10 69.7 186 35.5
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 1.1e-09 68.2 183 35.5
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 1.1e-09 68.2 183 33.3
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 1.4e-09 67.8 174 34.5
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 1.4e-09 67.8 136 39.7
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 1.4e-09 67.8 132 38.6
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 1.8e-09 67.4 183 35.5
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 2.4e-09 67.0 197 34.0
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 2.4e-09 67.0 184 34.8
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 3.2e-09 66.6 173 32.9
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 4.1e-09 66.2 183 36.1
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 1.2e-08 64.7 187 34.8
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 2.0e-08 63.9 176 34.1
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 2.0e-08 63.9 185 34.1
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 3.5e-08 63.2 157 31.8
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 3.5e-08 63.2 127 34.6
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 4.5e-08 62.8 184 32.6
Eucgr.E00268 Eucalyptus grandis HOM05D006310 ORTHO05D007768 4.5e-08 62.8 44 68.2
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 5.9e-08 62.4 180 37.2
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 7.8e-08 62.0 225 36.4
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 1.0e-07 61.6 176 32.4
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 1.0e-07 61.6 183 32.8
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.3e-07 61.2 143 42.0
Eucgr.E00267 Eucalyptus grandis HOM05D006310 ORTHO05D007768 1.7e-07 60.8 128 36.7
Nn1g00145 Nelumbo nucifera HOM05D006310 ORTHO05D007768 1.7e-07 60.8 153 39.9
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 3.9e-07 59.7 183 31.1
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 5.0e-07 59.3 177 30.5
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 6.6e-07 58.9 188 41.0
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 6.6e-07 58.9 197 34.5
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 1.1e-06 58.2 194 29.9
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.1e-06 58.2 71 47.9
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 1.1e-06 58.2 73 45.2
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 1.5e-06 57.8 195 31.3
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 1.5e-06 57.8 172 32.6
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 3.3e-06 56.6 177 31.6
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 4.3e-06 56.2 144 40.3
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 4.3e-06 56.2 43 62.8
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 5.6e-06 55.8 176 36.9
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 7.3e-06 55.5 196 38.3
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 7.3e-06 55.5 176 31.8
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 9.5e-06 55.1 177 30.5


User provided reference genes

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