Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 1.3e-142 509.6 246 100.0
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 4.2e-112 408.3 246 84.6
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 4.2e-112 408.3 263 80.2
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 2.1e-111 406.0 263 79.5
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 4.6e-111 404.8 254 81.5
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 7.9e-111 404.1 259 80.3
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 3.9e-110 401.7 253 79.8
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 8.7e-110 400.6 257 78.6
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 1.1e-109 400.2 243 84.8
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 2.5e-109 399.1 260 77.7
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 1.6e-108 396.4 246 80.5
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 8.2e-108 394.0 259 78.0
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 3.1e-107 392.1 248 80.6
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 1.2e-106 390.2 248 79.0
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 5.9e-106 387.9 264 75.8
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 1.1e-104 383.6 264 74.6
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 2.1e-103 379.4 259 74.5
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 5.7e-101 371.3 258 72.9
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 2.5e-96 355.9 249 74.7
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 5.7e-85 318.2 256 63.7
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 9.1e-83 310.8 254 61.0
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 1.6e-82 310.1 252 61.9
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 2.7e-82 309.3 255 61.2
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 2.9e-81 305.8 252 60.3
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 1.9e-80 303.1 251 60.2
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 2.5e-80 302.8 260 60.0
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.5e-80 302.8 247 59.5
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 5.5e-80 301.6 262 57.6
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 7.2e-80 301.2 190 74.7
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 9.4e-80 300.8 249 59.8
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 9.4e-80 300.8 252 59.5
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.2e-79 300.4 254 56.7
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 1.6e-79 300.1 181 75.1
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 1.6e-79 300.1 257 57.2
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.7e-79 299.3 254 59.8
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.7e-79 299.3 254 59.4
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 2.7e-79 299.3 258 58.5
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 3.6e-79 298.9 250 60.8
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 4.7e-79 298.5 259 57.9
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 1.4e-78 297.0 181 74.6
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 1.4e-78 297.0 260 58.8
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 1.8e-78 296.6 256 57.0
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 1.8e-78 296.6 256 57.0
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 2.3e-78 296.2 261 59.4
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 2.3e-78 296.2 248 60.1
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 2.3e-78 296.2 253 59.3
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 3.0e-78 295.8 181 74.6
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.0e-78 295.8 254 59.1
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 4.0e-78 295.4 252 57.5
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 5.2e-78 295.0 257 59.5
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 8.8e-78 294.3 253 59.7
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 8.8e-78 294.3 253 59.7
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.2e-77 293.9 254 59.1
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 1.5e-77 293.5 258 57.8
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.0e-77 293.1 253 58.5
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 2.6e-77 292.7 184 71.2
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 3.4e-77 292.4 260 57.7
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 9.8e-77 290.8 181 72.4
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 9.8e-77 290.8 262 55.3
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 1.3e-76 290.4 254 59.4
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 2.8e-76 289.3 249 58.6
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 6.3e-76 288.1 256 58.2
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 6.3e-76 288.1 255 58.0
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 6.3e-76 288.1 249 58.2
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 6.3e-76 288.1 248 59.3
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 8.3e-76 287.7 250 55.6
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.1e-75 287.3 256 58.2
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.1e-75 287.3 263 57.0
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 1.1e-75 287.3 260 55.4
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 1.1e-75 287.3 259 57.9
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 1.4e-75 287.0 260 56.2
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.8e-75 286.6 200 69.0
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 4.1e-75 285.4 253 57.3
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 5.4e-75 285.0 262 55.3
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.2e-74 283.9 255 55.7
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.2e-74 283.9 248 57.3
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.0e-74 283.1 248 56.9
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 2.0e-74 283.1 263 55.1
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 4.5e-74 282.0 259 55.2
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 5.9e-74 281.6 257 56.4
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 5.9e-74 281.6 257 56.0
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 1.0e-73 280.8 253 55.3
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.3e-73 280.4 254 55.5
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 2.2e-73 279.6 287 53.3
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 2.9e-73 279.3 253 56.5
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 3.8e-73 278.9 258 53.9
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 5.0e-73 278.5 182 67.6
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 5.0e-73 278.5 249 57.4
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 8.5e-73 277.7 254 54.7
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 1.1e-72 277.3 245 58.8
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 1.1e-72 277.3 251 55.4
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 1.5e-72 276.9 189 66.1
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 1.9e-72 276.6 259 53.7
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 2.5e-72 276.2 178 69.7
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 5.5e-72 275.0 256 55.9
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 9.4e-72 274.2 176 72.7
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 1.6e-71 273.5 257 53.3
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 2.1e-71 273.1 262 51.9
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 2.1e-71 273.1 256 54.3
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 3.6e-71 272.3 214 59.8
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.4e-70 270.4 221 58.8
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.8e-70 270.0 189 63.5
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 1.8e-70 270.0 231 57.6
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 1.8e-70 270.0 231 57.6
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.3e-70 269.6 221 57.9
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 8.8e-70 267.7 186 63.4
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 1.2e-69 267.3 251 55.4
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 1.2e-69 267.3 180 67.8
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 1.5e-69 266.9 250 52.0
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 9.8e-69 264.2 241 53.1
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 9.8e-69 264.2 252 53.2
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.2e-68 263.1 219 57.5
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.2e-68 263.1 219 57.5
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 3.1e-67 259.2 171 67.8
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 9.2e-67 257.7 255 54.5
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 5.9e-66 255.0 175 64.6
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 2.9e-65 252.7 213 61.0
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 2.9e-65 252.7 231 52.8
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 3.3e-64 249.2 178 60.7
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 5.6e-64 248.4 147 73.5
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 2.1e-63 246.5 213 60.6
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 4.7e-63 245.4 250 50.0
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 6.1e-63 245.0 246 52.4
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 1.0e-62 244.2 147 74.8
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 1.2e-61 240.7 221 59.3
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 4.4e-61 238.8 235 54.0
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 7.0e-59 231.5 216 53.7
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.7e-58 229.6 254 48.4
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 4.6e-58 228.8 148 70.9
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 7.8e-58 228.0 210 53.3
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 2.9e-52 209.5 174 54.6
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.7e-52 209.1 245 46.1
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.7e-52 209.1 152 64.5
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.4e-51 206.5 155 62.6
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.6e-50 203.8 177 54.2
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 2.7e-50 203.0 167 56.3
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 6.0e-50 201.8 144 62.5
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 1.1e-48 197.6 170 52.4
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 1.9e-48 196.8 254 44.9
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 2.5e-48 196.4 173 53.2
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 3.3e-48 196.1 111 78.4
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 3.1e-46 189.5 169 53.3
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 1.5e-45 187.2 260 43.8
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.9e-43 180.3 192 50.5
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 6.0e-34 148.7 143 51.7
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 8.1e-31 138.3 101 64.4
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.8e-30 137.1 107 63.6
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 2.6e-29 133.3 84 70.2
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 9.3e-27 124.8 146 45.2
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 1.3e-25 120.9 213 30.5
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.0e-25 119.8 133 51.1
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.1e-24 117.9 82 57.3
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 7.3e-24 115.2 63 81.0
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 7.3e-24 115.2 71 74.6
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 9.0e-22 108.2 141 37.6
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 2.9e-20 103.2 77 61.0
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 1.3e-17 94.4 65 64.6
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.5e-16 90.1 67 56.7
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 2.6e-13 80.1 86 43.0
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.9e-11 73.9 39 76.9
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.5e-11 72.4 52 57.7
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 7.9e-10 68.6 46 60.9
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.9e-08 63.9 51 52.9
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.9e-08 63.9 52 51.9


User provided reference genes

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