Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18404 Brassica carinata HOM05D001827 ORTHO05D001790 6.0e-88 327.8 206 100.0
BcaB04g18402 Brassica carinata HOM05D001827 ORTHO05D001790 7.9e-88 327.4 205 100.0
A08p12930 Brassica napus HOM05D001827 ORTHO05D001790 1.0e-74 283.9 205 77.6
BolC8t48440H Brassica oleracea HOM05D001827 ORTHO05D001790 6.5e-74 281.2 205 87.8
BcaB04g18403 Brassica carinata HOM05D001827 ORTHO05D001790 2.0e-67 259.6 205 73.2
Sp7g17000 Schrenkiella parvula HOM05D001827 ORTHO05D001790 5.0e-66 255.0 205 69.8
BcaC07g38051 Brassica carinata HOM05D001827 ORTHO05D001790 2.5e-65 252.7 205 82.4
BcaC06g33550 Brassica carinata HOM05D001827 ORTHO05D001790 2.1e-64 249.6 205 69.3
A03p50330 Brassica napus HOM05D001827 ORTHO05D001790 4.6e-64 248.4 205 69.3
Thhalv10024903m.g Eutrema salsugineum HOM05D001827 ORTHO05D001790 4.6e-64 248.4 205 67.8
BraA03t14122Z Brassica rapa HOM05D001827 ORTHO05D001790 1.0e-63 247.3 205 68.8
BraA01t01943Z Brassica rapa HOM05D001827 ORTHO05D001790 1.8e-63 246.5 205 67.8
BcaC09g50446 Brassica carinata HOM05D001827 ORTHO05D001790 3.0e-63 245.7 205 68.3
C01p25330 Brassica napus HOM05D001827 ORTHO05D001790 3.0e-63 245.7 205 68.3
A01p20190 Brassica napus HOM05D001827 ORTHO05D001790 5.1e-63 245.0 205 67.3
BcaNung03476 Brassica carinata HOM05D001827 ORTHO05D001790 8.8e-63 244.2 205 68.3
Carub.0007s2421 Capsella rubella HOM05D001827 ORTHO05D001790 1.1e-62 243.8 205 70.2
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 2.0e-62 243.0 205 67.3
BolC7t45372H Brassica oleracea HOM05D001827 ORTHO05D001790 4.4e-62 241.9 203 68.0
C07p48640 Brassica napus HOM05D001827 ORTHO05D001790 2.8e-61 239.2 203 67.5
AL7G37520 Arabidopsis lyrata HOM05D001827 ORTHO05D001790 1.5e-59 233.4 205 71.2
AT4G17210 Arabidopsis thaliana HOM05D001827 ORTHO05D001790 3.4e-59 232.3 205 63.9
CARHR223810 Cardamine hirsuta HOM05D001827 ORTHO05D001790 1.7e-58 229.9 205 64.4
Aa31LG6G30 Aethionema arabicum HOM05D001827 ORTHO05D001790 2.7e-43 179.5 209 51.7
THA.LOC104806742 Tarenaya hassleriana HOM05D001827 ORTHO05D001790 3.3e-33 146.0 214 43.9
Thhalv10007286m.g Eutrema salsugineum HOM05D001827 ORTHO05D001790 3.9e-18 95.9 213 33.3
CARHR012500 Cardamine hirsuta HOM05D001827 ORTHO05D001790 1.9e-17 93.6 213 31.9
Aa31LG2G12390 Aethionema arabicum HOM05D001827 ORTHO05D001790 5.6e-17 92.0 212 32.1
A08p32960 Brassica napus HOM05D001827 ORTHO05D001790 7.3e-17 91.7 213 32.9
Thecc.06G241600 Theobroma cacao HOM05D001827 ORTHO05D001790 7.3e-17 91.7 217 31.8
BraA09t41752Z Brassica rapa HOM05D001827 ORTHO05D001790 2.1e-16 90.1 212 32.1
BcaNung05493 Brassica carinata HOM05D001827 ORTHO05D001790 4.7e-16 89.0 212 32.1
A09p64060 Brassica napus HOM05D001827 ORTHO05D001790 4.7e-16 89.0 212 32.1
BolC8t52305H Brassica oleracea HOM05D001827 ORTHO05D001790 4.7e-16 89.0 212 32.1
BraA08t35216Z Brassica rapa HOM05D001827 ORTHO05D001790 4.7e-16 89.0 213 31.9
C08p47640 Brassica napus HOM05D001827 ORTHO05D001790 6.2e-16 88.6 212 32.1
AT1G12150 Arabidopsis thaliana HOM05D001827 ORTHO05D001790 8.0e-16 88.2 212 31.6
Cpa.g.sc27.220 Carica papaya HOM05D001827 ORTHO05D001790 1.1e-15 87.8 213 30.5
MD05G1362200 Malus domestica HOM05D001827 ORTHO05D001790 1.4e-15 87.4 217 29.0
PGR042G0925 Punica granatum HOM05D001827 ORTHO05D001790 1.4e-15 87.4 217 30.9
Sp1g10820 Schrenkiella parvula HOM05D001827 ORTHO05D001790 1.4e-15 87.4 212 31.1
Carub.0001s1184 Capsella rubella HOM05D001827 ORTHO05D001790 2.3e-15 86.7 212 30.7
Ca_00766_v3 Cicer arietinum L. HOM05D001827 ORTHO05D001790 2.3e-15 86.7 217 30.4
Duzib235G1271 Durio zibethinus HOM05D001827 ORTHO05D001790 4.0e-15 85.9 216 29.6
C08p15260 Brassica napus HOM05D001827 ORTHO05D001790 5.2e-15 85.5 213 31.5
BolC8t49155H Brassica oleracea HOM05D001827 ORTHO05D001790 5.2e-15 85.5 213 31.5
AL1G23420 Arabidopsis lyrata HOM05D001827 ORTHO05D001790 6.8e-15 85.1 212 31.1
Psat1g172320 Pisum sativum HOM05D001827 ORTHO05D001790 8.9e-15 84.7 217 30.9
Haze_07028 Corylus avellana HOM05D001827 ORTHO05D001790 2.6e-14 83.2 215 27.9
TPR.G17542 Trifolium pratense HOM05D001827 ORTHO05D001790 2.6e-14 83.2 217 30.4
Lj4g0001684 Lotus japonicus HOM05D001827 ORTHO05D001790 4.4e-14 82.4 217 30.4
Cfa000026 Carpinus fangiana HOM05D001827 ORTHO05D001790 5.8e-14 82.0 217 26.7
Prupe.4G003200 Prunus persica HOM05D001827 ORTHO05D001790 9.8e-14 81.3 217 27.6
COL.COLO4_31944 Corchorus olitorius HOM05D001827 ORTHO05D001790 1.3e-13 80.9 217 30.0
Lalb_Chr13g0304391 Lupinus albus HOM05D001827 ORTHO05D001790 1.3e-13 80.9 217 30.9
Lalb_Chr18g0057361 Lupinus albus HOM05D001827 ORTHO05D001790 1.7e-13 80.5 216 30.1
Glyma.09G015000 Glycine max HOM05D001827 ORTHO05D001790 2.2e-13 80.1 217 28.6
Eucgr.E03845 Eucalyptus grandis HOM05D001827 ORTHO05D001790 2.9e-13 79.7 217 30.0
PSO210G4928 Papaver somniferum HOM05D001827 ORTHO05D001790 2.9e-13 79.7 213 26.8
Eucgr.L01393 Eucalyptus grandis HOM05D001827 ORTHO05D001790 3.7e-13 79.3 217 30.0
MELO3C026089.2 Cucumis melo HOM05D001827 ORTHO05D001790 4.9e-13 79.0 219 29.7
Lalb_Chr07g0176921 Lupinus albus HOM05D001827 ORTHO05D001790 4.9e-13 79.0 217 30.9
Lalb_Chr15g0088281 Lupinus albus HOM05D001827 ORTHO05D001790 4.9e-13 79.0 217 30.4
Medtr4g134110 Medicago truncatula HOM05D001827 ORTHO05D001790 6.4e-13 78.6 204 33.8
BcaNung00114 Brassica carinata HOM05D001827 ORTHO05D095133 8.3e-13 78.2 84 61.9
Lj6g0012256 Lotus japonicus HOM05D001827 ORTHO05D001790 8.3e-13 78.2 217 29.5
QL05p066984 Quercus lobata HOM05D001827 ORTHO05D001790 8.3e-13 78.2 217 27.2
TWI77G0847 Tripterygium wilfordii HOM05D001827 ORTHO05D001790 8.3e-13 78.2 216 29.2
PSO210G6911 Papaver somniferum HOM05D001827 ORTHO05D001790 1.9e-12 77.0 213 25.8
arahy.Tifrunner.gnm1.ann1.L4SZG2 Arachis hypogaea HOM05D001827 ORTHO05D001790 2.4e-12 76.6 223 29.1
VMungo0540G0065 Vigna mungo HOM05D001827 ORTHO05D001790 2.4e-12 76.6 210 30.5
ClCG01G011200 Citrullus lanatus HOM05D001827 ORTHO05D001790 3.2e-12 76.3 220 28.6
CsaV3_1G015450 Cucumis sativus L. HOM05D001827 ORTHO05D001790 3.2e-12 76.3 220 29.1
Lalb_Chr12g0195931 Lupinus albus HOM05D001827 ORTHO05D001790 3.2e-12 76.3 218 31.7
arahy.Tifrunner.gnm1.ann1.L6LFU0 Arachis hypogaea HOM05D001827 ORTHO05D001790 4.1e-12 75.9 223 29.1
Ca_20990_v3 Cicer arietinum L. HOM05D000879 ORTHO05D001790 5.4e-12 75.5 218 30.7
Lsat_1_v5_gn_7_12861 Lactuca sativa HOM05D001827 ORTHO05D001790 7.0e-12 75.1 208 30.3
Atru.chr1.2237 Acer truncatum HOM05D001827 ORTHO05D001790 9.2e-12 74.7 211 29.4
Atru.chr1.2239 Acer truncatum HOM05D001827 ORTHO05D001790 9.2e-12 74.7 211 29.4
Lalb_Chr20g0114111 Lupinus albus HOM05D001827 ORTHO05D001790 9.2e-12 74.7 204 27.9
Sed0000061 Sechium edule HOM05D001827 ORTHO05D001790 3.5e-11 72.8 220 28.2
MSTRG.14494 Avicennia marina HOM05D001827 ORTHO05D001790 4.6e-11 72.4 218 26.6
arahy.Tifrunner.gnm1.ann1.TX1KI1 Arachis hypogaea HOM05D001827 ORTHO05D001790 7.8e-11 71.6 217 29.0
Dinv07157 Davidia involucrata HOM05D001827 ORTHO05D001790 7.8e-11 71.6 133 34.6
Glyma.15G120700 Glycine max HOM05D001827 ORTHO05D001790 7.8e-11 71.6 217 27.2
CSS0027094 Camellia sinensis var. sinensis HOM05D001827 ORTHO05D001790 1.0e-10 71.2 218 27.5
Ciclev10014746m.g Citrus clementina HOM05D001827 ORTHO05D001790 1.0e-10 71.2 219 32.4
Cc05_g15100 Coffea canephora HOM05D001827 ORTHO05D001790 1.0e-10 71.2 204 25.5
Hma1.2p1_0048F.1_g027990 Hydrangea macrophylla HOM05D001827 ORTHO05D001790 1.0e-10 71.2 206 25.7
MBI14_g13533_MAGBIO Magnolia biondii HOM05D001827 ORTHO05D001790 1.0e-10 71.2 218 28.0
TPR.G5995 Trifolium pratense HOM05D001827 ORTHO05D001790 1.0e-10 71.2 218 28.4
arahy.Tifrunner.gnm1.ann1.DFDN71 Arachis hypogaea HOM05D001827 ORTHO05D001790 1.3e-10 70.9 217 29.0
Os12g0271600 Oryza sativa ssp. japonica HOM05D001827 ORTHO05D001790 1.7e-10 70.5 197 28.4
Psat0s3798g0080 Pisum sativum HOM05D001827 ORTHO05D001790 1.7e-10 70.5 218 28.4
Cfa016913 Carpinus fangiana HOM05D001827 ORTHO05D001790 2.3e-10 70.1 214 25.7
TAR626G1140 Trochodendron aralioides HOM05D001827 ORTHO05D001790 6.6e-10 68.6 218 25.7
Gohir.A10G007800 Gossypium hirsutum HOM05D001827 ORTHO05D001790 8.6e-10 68.2 144 30.6
CSS0010892 Camellia sinensis var. sinensis HOM05D001827 ORTHO05D001790 1.1e-09 67.8 206 27.7
Gohir.D10G007700 Gossypium hirsutum HOM05D001827 ORTHO05D001790 1.1e-09 67.8 144 29.9
Gorai.011G008400 Gossypium raimondii HOM05D001827 ORTHO05D001790 1.1e-09 67.8 144 29.9
Zm00001eb133280 Zea mays HOM05D001827 ORTHO05D001790 2.5e-09 66.6 208 26.0
Haze_09842 Corylus avellana HOM05D001827 ORTHO05D001790 3.3e-09 66.2 215 24.7
FAN21G1072 Fragaria x ananassa HOM05D001827 ORTHO05D001790 3.3e-09 66.2 210 27.1
Zm00001eb408590 Zea mays HOM05D001827 ORTHO05D001790 4.3e-09 65.9 208 26.0
Actinidia11907 Actinidia chinensis HOM05D001827 ORTHO05D001790 7.3e-09 65.1 146 29.5
VMungo1215G0153 Vigna mungo HOM05D001827 ORTHO05D001790 9.5e-09 64.7 149 30.9
Phvul.003G087700 Phaseolus vulgaris HOM05D001827 ORTHO05D001790 1.2e-08 64.3 149 31.5
Gorai.002G101700 Gossypium raimondii HOM05D001827 ORTHO05D001790 2.1e-08 63.5 218 24.8
Gohir.A01G092700 Gossypium hirsutum HOM05D001827 ORTHO05D001790 2.8e-08 63.2 218 25.7
Manes.15G058600 Manihot esculenta HOM05D001827 ORTHO05D001790 2.8e-08 63.2 148 30.4
RcHm_v2.0_Chr5g0000421 Rosa chinensis HOM05D001827 ORTHO05D001790 2.8e-08 63.2 143 30.1
Ah.06g180970 Amaranthus hybridus HOM05D001827 ORTHO05D001790 3.6e-08 62.8 218 22.9
Medtr3g060660 Medicago truncatula HOM05D001827 ORTHO05D001790 6.2e-08 62.0 200 23.5
TAR517G0009 Trochodendron aralioides HOM05D001827 ORTHO05D001790 6.2e-08 62.0 204 27.0
Dinv10348 Davidia involucrata HOM05D001827 ORTHO05D001790 8.1e-08 61.6 204 26.5
Gohir.D01G077200 Gossypium hirsutum HOM05D001827 ORTHO05D001790 8.1e-08 61.6 218 24.8
Medtr2g027130 Medicago truncatula HOM05D001827 ORTHO05D001790 8.1e-08 61.6 217 27.6
TWI38G0190 Tripterygium wilfordii HOM05D001827 ORTHO05D001790 8.1e-08 61.6 218 24.3
Atru.chr2.3710 Acer truncatum HOM05D001827 ORTHO05D001790 1.1e-07 61.2 218 23.9
Rhsim02G0090400 Rhododendron simsii HOM05D001827 ORTHO05D001790 1.1e-07 61.2 135 30.4
CiPaw.12G139200 Carya illinoinensis HOM05D001827 ORTHO05D001790 1.4e-07 60.8 204 25.0
CDE02G3428 Ceratophyllum demersum HOM05D001827 ORTHO05D001790 1.4e-07 60.8 218 24.3
Duzib213G1002 Durio zibethinus HOM05D001827 ORTHO05D001790 1.8e-07 60.5 204 24.0
Peaxi162Scf00139g01120 Petunia axillaris HOM05D001827 ORTHO05D001790 1.8e-07 60.5 204 24.5
Thecc.07G010300 Theobroma cacao HOM05D001827 ORTHO05D001790 1.8e-07 60.5 204 23.5
Manes.08G068500 Manihot esculenta HOM05D001827 ORTHO05D001790 3.1e-07 59.7 210 24.3
Oeu005954.1 Olea europaea HOM05D001827 ORTHO05D001790 3.1e-07 59.7 218 22.9
Lj6g0015113 Lotus japonicus HOM05D001827 ORTHO05D001790 5.2e-07 58.9 218 23.9
Manes.09G083200 Manihot esculenta HOM05D001827 ORTHO05D001790 5.2e-07 58.9 209 21.5
QL08p003651 Quercus lobata HOM05D001827 ORTHO05D001790 5.2e-07 58.9 218 23.9
SalBow1G3015 Salvia bowleyana HOM05D001827 ORTHO05D001790 5.2e-07 58.9 136 32.4
Hund23030 Selenicereus undatus HOM05D001827 ORTHO05D001790 5.2e-07 58.9 150 28.0
Cpa.g.sc12.122 Carica papaya HOM05D001827 ORTHO05D001790 6.8e-07 58.5 141 28.4
Migut.M01448 Erythranthe guttata HOM05D001827 ORTHO05D001790 6.8e-07 58.5 134 30.6
FvH4_3g00281 Fragaria vesca HOM05D001827 ORTHO05D001790 6.8e-07 58.5 143 42.7
Glyma.07G268550 Glycine max HOM05D000879 ORTHO05D001790 6.8e-07 58.5 143 30.1
FAN21G2473 Fragaria x ananassa HOM05D001827 ORTHO05D001790 8.9e-07 58.2 218 23.4
Actinidia04995 Actinidia chinensis HOM05D001827 ORTHO05D001790 1.2e-06 57.8 218 23.9
Migut.H01633 Erythranthe guttata HOM05D001827 ORTHO05D001790 1.2e-06 57.8 143 28.7
Glyma.17G005200 Glycine max HOM05D001827 ORTHO05D001790 1.2e-06 57.8 217 26.7
HanXRQChr16g0515721 Helianthus annuus HOM05D001827 ORTHO05D001790 1.2e-06 57.8 218 23.4
ECA234G3071 Erigeron canadensis HOM05D001827 ORTHO05D001790 1.5e-06 57.4 147 27.9
Nitab4.5_0006294g0040 Nicotiana tabacum HOM05D001827 ORTHO05D001790 2.0e-06 57.0 199 25.6
CAN.G1263.4 Capsicum annuum HOM05D001827 ORTHO05D001790 2.6e-06 56.6 203 25.1
Sc05g0009880 Simmondsia chinensis HOM05D001827 ORTHO05D001790 2.6e-06 56.6 203 24.6
MSTRG.7123 Avicennia marina HOM05D001827 ORTHO05D001790 3.4e-06 56.2 203 23.6
Cc09_g00270 Coffea canephora HOM05D001827 ORTHO05D001790 3.4e-06 56.2 141 31.2
FAN16G2144 Fragaria x ananassa HOM05D001827 ORTHO05D001790 3.4e-06 56.2 218 23.4
Gorai.013G151600 Gossypium raimondii HOM05D001827 ORTHO05D001790 4.4e-06 55.8 148 28.4
Lsat_1_v5_gn_4_64000 Lactuca sativa HOM05D001827 ORTHO05D001790 4.4e-06 55.8 147 27.2
TAR629G2670 Trochodendron aralioides HOM05D001812 ORTHO05D001874 4.4e-06 55.8 211 26.5
Aa31LG5G11980 Aethionema arabicum HOM05D001812 ORTHO05D001874 5.8e-06 55.5 204 24.5
BcaB03g13203 Brassica carinata HOM05D001827 ORTHO05D001790 5.8e-06 55.5 218 25.7
FvH4_3g42741 Fragaria vesca HOM05D001827 ORTHO05D001790 5.8e-06 55.5 218 22.9
FAN11G2212 Fragaria x ananassa HOM05D001827 ORTHO05D001790 5.8e-06 55.5 218 22.9
FAN25G2361 Fragaria x ananassa HOM05D001827 ORTHO05D001790 5.8e-06 55.5 218 22.9
HanXRQChr15g0470211 Helianthus annuus HOM05D001827 ORTHO05D001790 5.8e-06 55.5 129 29.5
Lj2C256G13 Lonicera japonica HOM05D000879 ORTHO05D001790 5.8e-06 55.5 125 32.8
Peaxi162Scf00811g00224 Petunia axillaris HOM05D001827 ORTHO05D001790 5.8e-06 55.5 194 25.8
Sabra16G0010100 Salix brachista HOM05D001827 ORTHO05D001790 7.5e-06 55.1 217 25.8
CSS0020968 Camellia sinensis var. sinensis HOM05D001827 ORTHO05D001790 9.9e-06 54.7 134 31.3
CSS0025881 Camellia sinensis var. sinensis HOM05D001827 ORTHO05D001790 9.9e-06 54.7 134 31.3
Gohir.D13G135250 Gossypium hirsutum HOM05D001827 ORTHO05D001790 9.9e-06 54.7 148 27.7
Hma1.2p1_1516F.1_g288370 Hydrangea macrophylla HOM05D001827 ORTHO05D001790 9.9e-06 54.7 218 22.9
TWI38G2079 Tripterygium wilfordii HOM05D001827 ORTHO05D001790 9.9e-06 54.7 216 23.6


User provided reference genes

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