Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18380 Brassica carinata HOM05D012091 ORTHO05D013971 3.0e-105 385.2 193 100.0
BolC4t28408H Brassica oleracea HOM05D012091 ORTHO05D013971 1.8e-25 120.2 81 77.8
C04p69110 Brassica napus HOM05D012091 ORTHO05D013971 1.5e-24 117.1 83 75.9
Sp4g23830 Schrenkiella parvula HOM05D012091 ORTHO05D013971 3.3e-19 99.4 84 66.7
BcaB06g29189 Brassica carinata HOM05D012091 ORTHO05D013971 7.3e-19 98.2 76 68.4
A04p31690 Brassica napus HOM05D012091 ORTHO05D013971 2.1e-18 96.7 86 60.5
BraA04t18626Z Brassica rapa HOM05D012091 ORTHO05D013971 2.1e-18 96.7 86 60.5
Carub.0004s2384 Capsella rubella HOM05D012091 ORTHO05D013971 2.8e-18 96.3 92 63.0
BcaC09g50141 Brassica carinata HOM05D002305 ORTHO05D002528 4.7e-18 95.5 71 71.8
BcaNung00345 Brassica carinata HOM05D002305 ORTHO05D002528 4.7e-18 95.5 71 70.4
BraA01t02210Z Brassica rapa HOM05D002305 ORTHO05D002528 4.7e-18 95.5 71 71.8
CARHR221180 Cardamine hirsuta HOM05D002305 ORTHO05D002528 4.7e-18 95.5 71 70.4
Thhalv10026306m.g Eutrema salsugineum HOM05D002305 ORTHO05D002528 6.2e-18 95.1 71 71.8
AL7G41250 Arabidopsis lyrata HOM05D002305 ORTHO05D002528 3.1e-17 92.8 71 69.0
AL7G41280 Arabidopsis lyrata HOM05D002305 ORTHO05D002528 4.0e-17 92.4 71 69.0
AT4G14710 Arabidopsis thaliana HOM05D002305 ORTHO05D002528 4.0e-17 92.4 71 69.0
CARHR136680 Cardamine hirsuta HOM05D012091 ORTHO05D013971 4.0e-17 92.4 85 61.2
Thhalv10026305m.g Eutrema salsugineum HOM05D002305 ORTHO05D002528 5.2e-17 92.0 71 70.4
Carub.0007s2748 Capsella rubella HOM05D002305 ORTHO05D002528 6.8e-17 91.7 71 67.6
Sp7g12810 Schrenkiella parvula HOM05D002305 ORTHO05D002528 6.8e-17 91.7 71 69.0
Aa31LG9G2650 Aethionema arabicum HOM05D002305 ORTHO05D002528 1.2e-16 90.9 71 69.0
DCAR_030685 Daucus carota HOM05D002305 ORTHO05D002528 3.4e-16 89.4 80 60.0
Carub.0007s2746 Capsella rubella HOM05D002305 ORTHO05D002528 4.4e-16 89.0 71 67.6
AT2G41550 Arabidopsis thaliana HOM05D012091 ORTHO05D013971 5.8e-16 88.6 90 61.1
A01p22970 Brassica napus HOM05D002305 ORTHO05D002528 9.8e-16 87.8 67 70.1
C01p28430 Brassica napus HOM05D002305 ORTHO05D002528 9.8e-16 87.8 67 70.1
BolC1t02784H Brassica oleracea HOM05D002305 ORTHO05D002528 9.8e-16 87.8 67 70.1
Carub.0003s3288 Capsella rubella HOM05D002305 ORTHO05D002528 1.7e-15 87.0 72 66.7
Nn1g02449 Nelumbo nucifera HOM05D002305 ORTHO05D002528 2.2e-15 86.7 71 66.2
TAR633G0825 Trochodendron aralioides HOM05D002305 ORTHO05D002528 2.9e-15 86.3 71 66.2
ECA248G3333 Erigeron canadensis HOM05D002305 ORTHO05D002528 3.7e-15 85.9 71 66.2
Lsat_1_v5_gn_1_112921 Lactuca sativa HOM05D002305 ORTHO05D002528 3.7e-15 85.9 71 66.2
Solyc09g082650.4 Solanum lycopersicum HOM05D002305 ORTHO05D002528 3.7e-15 85.9 71 64.8
AL4G19080 Arabidopsis lyrata HOM05D002305 ORTHO05D002528 4.9e-15 85.5 71 64.8
CiPaw.01G195500 Carya illinoinensis HOM05D002305 ORTHO05D002528 6.4e-15 85.1 71 64.8
Cpa.g.sc44.121 Carica papaya HOM05D002305 ORTHO05D002528 8.3e-15 84.7 71 64.8
AUR62034683 Chenopodium quinoa HOM05D002305 ORTHO05D002528 8.3e-15 84.7 71 64.8
Nitab4.5_0001917g0010 Nicotiana tabacum HOM05D002305 ORTHO05D002528 1.1e-14 84.3 71 63.4
Sopen09g031500 Solanum pennellii HOM05D002305 ORTHO05D002528 1.4e-14 84.0 71 63.4
PGSC0003DMG400006449 Solanum tuberosum HOM05D002305 ORTHO05D002528 1.4e-14 84.0 71 63.4
AUR62038283 Chenopodium quinoa HOM05D002305 ORTHO05D002528 1.9e-14 83.6 71 63.4
Eucgr.B01892 Eucalyptus grandis HOM05D002305 ORTHO05D002528 1.9e-14 83.6 66 66.7
Peaxi162Scf00316g00526 Petunia axillaris HOM05D002305 ORTHO05D002528 1.9e-14 83.6 71 62.0
Nitab4.5_0000090g0280 Nicotiana tabacum HOM05D002305 ORTHO05D002528 2.4e-14 83.2 71 62.0
Rhsim04G0197400 Rhododendron simsii HOM05D002305 ORTHO05D002528 2.4e-14 83.2 71 63.4
TAR362G0269 Trochodendron aralioides HOM05D002305 ORTHO05D002528 2.4e-14 83.2 71 63.4
Lj3A728T53 Lonicera japonica HOM05D002305 ORTHO05D002528 3.2e-14 82.8 71 63.4
AT2G26400 Arabidopsis thaliana HOM05D002305 ORTHO05D002528 4.1e-14 82.4 71 62.0
PGR004G2750 Punica granatum HOM05D002305 ORTHO05D002528 4.1e-14 82.4 71 63.4
Atru.chr4.2370 Acer truncatum HOM05D002305 ORTHO05D002528 5.4e-14 82.0 71 62.0
Atru.chr4.2394 Acer truncatum HOM05D002305 ORTHO05D002528 5.4e-14 82.0 71 62.0
Cc03_g04270 Coffea canephora HOM05D002305 ORTHO05D002528 5.4e-14 82.0 71 62.0
Eucgr.B01011 Eucalyptus grandis HOM05D002305 ORTHO05D002528 5.4e-14 82.0 66 65.2
QL06p001008 Quercus lobata HOM05D002305 ORTHO05D002528 5.4e-14 82.0 71 62.0
GSVIVG01018040001 Vitis vinifera HOM05D002305 ORTHO05D002528 7.1e-14 81.6 138 43.5
AL4G39650 Arabidopsis lyrata HOM05D012091 ORTHO05D013971 9.2e-14 81.3 87 58.6
MSTRG.21876 Avicennia marina HOM05D002305 ORTHO05D002528 9.2e-14 81.3 71 63.4
Eucgr.B01017 Eucalyptus grandis HOM05D002305 ORTHO05D002528 9.2e-14 81.3 66 63.6
FvH4_4g01140 Fragaria vesca HOM05D002305 ORTHO05D002528 9.2e-14 81.3 66 66.7
FAN12G2438 Fragaria x ananassa HOM05D002305 ORTHO05D002528 9.2e-14 81.3 66 66.7
Prupe.1G021100 Prunus persica HOM05D002305 ORTHO05D002528 9.2e-14 81.3 66 66.7
RcHm_v2.0_Chr4g0387711 Rosa chinensis HOM05D002305 ORTHO05D002528 9.2e-14 81.3 60 71.7
RcHm_v2.0_Chr4g0387721 Rosa chinensis HOM05D002305 ORTHO05D002528 9.2e-14 81.3 66 66.7
Aqoxy2G03462 Aquilegia oxysepala HOM05D002305 ORTHO05D002528 1.2e-13 80.9 66 65.2
Ah.13g071780 Amaranthus hybridus HOM05D002305 ORTHO05D002528 1.6e-13 80.5 71 59.2
arahy.Tifrunner.gnm1.ann1.25NDHM Arachis hypogaea HOM05D002305 ORTHO05D002528 1.6e-13 80.5 71 59.2
arahy.Tifrunner.gnm1.ann1.5KYB4B Arachis hypogaea HOM05D002305 ORTHO05D002528 1.6e-13 80.5 71 59.2
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 2.1e-13 80.1 66 65.2
CAN.G1437.6 Capsicum annuum HOM05D002305 ORTHO05D002528 2.7e-13 79.7 71 59.2
Ciclev10005931m.g Citrus clementina HOM05D002305 ORTHO05D002528 2.7e-13 79.7 68 63.2
Duzib151G0376 Durio zibethinus HOM05D002305 ORTHO05D002528 2.7e-13 79.7 65 67.7
ECA248G0970 Erigeron canadensis HOM05D002305 ORTHO05D002528 2.7e-13 79.7 72 63.9
Migut.G00382 Erythranthe guttata HOM05D002305 ORTHO05D002528 2.7e-13 79.7 71 60.6
Thecc.04G238400 Theobroma cacao HOM05D002305 ORTHO05D002528 2.7e-13 79.7 71 63.4
CSS0008467 Camellia sinensis var. sinensis HOM05D002305 ORTHO05D002528 3.5e-13 79.3 71 60.6
SGA_v2.0_scaffold191G40429 Striga asiatica HOM05D002305 ORTHO05D002528 3.5e-13 79.3 67 64.2
THA.LOC104803049 Tarenaya hassleriana HOM05D002305 ORTHO05D002528 3.5e-13 79.3 66 63.6
CARHR183550 Cardamine hirsuta HOM05D002305 ORTHO05D002528 4.6e-13 79.0 71 57.7
Hma1.2p1_0549F.1_g176990 Hydrangea macrophylla HOM05D002305 ORTHO05D002528 4.6e-13 79.0 65 63.1
CAN.G1437.5 Capsicum annuum HOM05D002305 ORTHO05D002528 6.0e-13 78.6 66 65.2
Duzib212G0094 Durio zibethinus HOM05D002305 ORTHO05D002528 6.0e-13 78.6 65 64.6
Peaxi162Scf00316g00065 Petunia axillaris HOM05D002305 ORTHO05D002528 6.0e-13 78.6 66 62.1
Sc25g0004250 Simmondsia chinensis HOM05D002305 ORTHO05D002528 6.0e-13 78.6 68 63.2
VMungo0720G1441 Vigna mungo HOM05D002305 ORTHO05D002528 6.0e-13 78.6 71 59.2
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 7.8e-13 78.2 67 62.7
Gohir.A02G034200 Gossypium hirsutum HOM05D002305 ORTHO05D002528 7.8e-13 78.2 71 63.4
Gohir.D02G041000 Gossypium hirsutum HOM05D002305 ORTHO05D002528 7.8e-13 78.2 71 63.4
Gorai.005G045400 Gossypium raimondii HOM05D002305 ORTHO05D002528 7.8e-13 78.2 71 63.4
MD13G1199600 Malus domestica HOM05D002305 ORTHO05D002528 7.8e-13 78.2 71 59.2
MD16G1199600 Malus domestica HOM05D002305 ORTHO05D002528 7.8e-13 78.2 64 65.6
Sed0009282 Sechium edule HOM05D002305 ORTHO05D002528 7.8e-13 78.2 66 65.2
TWI09G1503 Tripterygium wilfordii HOM05D002305 ORTHO05D002528 7.8e-13 78.2 71 57.7
TAR369G0616 Trochodendron aralioides HOM05D002305 ORTHO05D002528 7.8e-13 78.2 66 63.6
arahy.Tifrunner.gnm1.ann1.4PTH1W Arachis hypogaea HOM05D002305 ORTHO05D002528 1.0e-12 77.8 66 65.2
arahy.Tifrunner.gnm1.ann1.E9249P Arachis hypogaea HOM05D002305 ORTHO05D002528 1.0e-12 77.8 66 65.2
MELO3C006502.2 Cucumis melo HOM05D002305 ORTHO05D002528 1.0e-12 77.8 66 63.6
DCAR_002369 Daucus carota HOM05D002305 ORTHO05D002528 1.0e-12 77.8 65 64.6
EL10Ac3g06508 Beta vulgaris HOM05D002305 ORTHO05D002528 1.3e-12 77.4 67 59.7
Potri.008G157500 Populus trichocarpa HOM05D002305 ORTHO05D002528 1.3e-12 77.4 66 63.6
Eucgr.H03413 Eucalyptus grandis HOM05D002305 ORTHO05D002528 1.7e-12 77.0 68 63.2
Lj6A645T39 Lonicera japonica HOM05D002305 ORTHO05D002528 1.7e-12 77.0 66 63.6
Manes.03G173300 Manihot esculenta HOM05D002305 ORTHO05D002528 1.7e-12 77.0 66 60.6
SalBow2G3369 Salvia bowleyana HOM05D002305 ORTHO05D002528 1.7e-12 77.0 67 62.7
CANSAT78G0735 Cannabis sativa HOM05D002305 ORTHO05D002528 2.3e-12 76.6 67 61.2
Sabra08G0119900 Salix brachista HOM05D002305 ORTHO05D002528 2.3e-12 76.6 70 60.0
unitig_748.g8328 Utricularia gibba HOM05D002305 ORTHO05D002528 2.3e-12 76.6 67 61.2
Aa31LG1G23600 Aethionema arabicum HOM05D012091 ORTHO05D013971 3.0e-12 76.3 73 58.9
CsaV3_3G012920 Cucumis sativus L. HOM05D002305 ORTHO05D002528 3.0e-12 76.3 66 62.1
Sed0000250 Sechium edule HOM05D002305 ORTHO05D002528 3.0e-12 76.3 66 62.1
TWI73G0730 Tripterygium wilfordii HOM05D002305 ORTHO05D002528 3.0e-12 76.3 71 57.7
ClCG05G004880 Citrullus lanatus HOM05D002305 ORTHO05D002528 3.9e-12 75.9 65 63.1
Phvul.007G061700 Phaseolus vulgaris HOM05D002305 ORTHO05D002528 3.9e-12 75.9 66 60.6
vmacro08369 Vaccinium macrocarpon HOM05D002305 ORTHO05D002528 3.9e-12 75.9 68 60.3
Os03g0161800 Oryza sativa ssp. japonica HOM05D002305 ORTHO05D002528 6.6e-12 75.1 71 56.3
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 1.1e-11 74.3 65 61.5
PSO832G4296 Papaver somniferum HOM05D002305 ORTHO05D002528 1.1e-11 74.3 67 59.7
MSTRG.9950 Avicennia marina HOM05D002305 ORTHO05D002528 1.5e-11 73.9 71 56.3
COL.COLO4_21563 Corchorus olitorius HOM05D002305 ORTHO05D002528 1.5e-11 73.9 62 64.5
HPP92_020350 Vanilla planifolia HOM05D002305 ORTHO05D002528 1.5e-11 73.9 71 57.7
Ca_10852_v3 Cicer arietinum L. HOM05D002305 ORTHO05D002528 2.5e-11 73.2 66 62.1
Zm00001eb004660 Zea mays HOM05D002305 ORTHO05D002528 2.5e-11 73.2 64 60.9
Medtr1g102870 Medicago truncatula HOM05D002305 ORTHO05D002528 3.3e-11 72.8 66 60.6
Glyma.10G244100 Glycine max HOM05D002305 ORTHO05D002528 5.6e-11 72.0 66 57.6
PSO384G0839 Papaver somniferum HOM05D002305 ORTHO05D002528 5.6e-11 72.0 67 56.7
TPR.G26087 Trifolium pratense HOM05D002305 ORTHO05D002528 5.6e-11 72.0 66 60.6
PSO443G0051 Papaver somniferum HOM05D002305 ORTHO05D002528 7.3e-11 71.6 67 56.7
Lj5g0003854 Lotus japonicus HOM05D002305 ORTHO05D002528 9.5e-11 71.2 66 59.1
Sp7g12805 Schrenkiella parvula HOM05D002305 ORTHO05D002528 9.5e-11 71.2 76 57.9
Glyma.20G150200 Glycine max HOM05D002305 ORTHO05D002528 1.2e-10 70.9 66 56.1
PGSC0003DMG400036103 Solanum tuberosum HOM05D002305 ORTHO05D002528 1.2e-10 70.9 66 62.1
Solyc09g082640.1 Solanum lycopersicum HOM05D002305 ORTHO05D002528 4.7e-10 68.9 63 58.7
CSS0041645 Camellia sinensis var. sinensis HOM05D002305 ORTHO05D002528 6.2e-10 68.6 64 56.2
Actinidia04512 Actinidia chinensis HOM05D002305 ORTHO05D002528 1.4e-09 67.4 67 58.2
CDE02G4119 Ceratophyllum demersum HOM05D002305 ORTHO05D002528 1.4e-09 67.4 66 56.1
Sopen09g031490 Solanum pennellii HOM05D002305 ORTHO05D002528 2.3e-09 66.6 66 57.6
Os10g0419400 Oryza sativa ssp. japonica HOM05D002305 ORTHO05D002528 3.1e-09 66.2 71 50.7
Thhalv10016632m.g Eutrema salsugineum HOM05D012091 ORTHO05D013971 6.8e-09 65.1 74 56.8
BcaB01g03053 Brassica carinata HOM05D012091 ORTHO05D013971 1.2e-08 64.3 56 66.1
ATR0665G588 Amborella trichopoda HOM05D002305 ORTHO05D002528 3.4e-08 62.8 62 54.8
Oeu017768.1 Olea europaea HOM05D002305 ORTHO05D002528 1.3e-07 60.8 52 61.5
Nitab4.5_0001667g0020 Nicotiana tabacum HOM05D002305 ORTHO05D002528 1.7e-07 60.5 60 58.3
PGSC0003DMG400006450 Solanum tuberosum HOM05D002305 ORTHO05D002528 2.2e-07 60.1 59 54.2
AT4G14716 Arabidopsis thaliana HOM05D002305 ORTHO05D002528 2.9e-07 59.7 52 59.6
Mapoly0052s0042 Marchantia polymorpha HOM05D002305 ORTHO05D002528 2.9e-07 59.7 59 52.5
Oeu064247.1 Olea europaea HOM05D002305 ORTHO05D002528 2.9e-07 59.7 52 59.6
Potri.008G157400 Populus trichocarpa HOM05D002305 ORTHO05D002528 3.7e-07 59.3 59 50.8
Manes.15G032800 Manihot esculenta HOM05D002305 ORTHO05D002528 4.9e-07 58.9 61 50.8
Nitab4.5_0010871g0010 Nicotiana tabacum HOM05D002305 ORTHO05D002528 4.9e-07 58.9 59 52.5
AUR62003294 Chenopodium quinoa HOM05D002305 ORTHO05D002528 6.4e-07 58.5 99 40.4
Sopen09g031480 Solanum pennellii HOM05D002305 ORTHO05D002528 6.4e-07 58.5 59 52.5
Cpa.g.sc44.120 Carica papaya HOM05D002305 ORTHO05D002528 1.4e-06 57.4 59 52.5
Sp2g08650 Schrenkiella parvula HOM05D002305 ORTHO05D002528 1.4e-06 57.4 59 52.5
Nitab4.5_0000090g0310 Nicotiana tabacum HOM05D002305 ORTHO05D002528 1.9e-06 57.0 59 50.8
Aa31LG5G3440 Aethionema arabicum HOM05D002305 ORTHO05D002528 2.4e-06 56.6 60 50.0
Pp3c17_20510 Physcomitrium patens HOM05D002305 ORTHO05D002528 2.4e-06 56.6 60 46.7
CSS0020675 Camellia sinensis var. sinensis HOM05D002305 ORTHO05D002528 3.2e-06 56.2 59 50.8
Gohir.D09G220700 Gossypium hirsutum HOM05D002305 ORTHO05D002528 3.2e-06 56.2 59 52.5
Actinidia23496 Actinidia chinensis HOM05D002305 ORTHO05D002528 4.1e-06 55.8 52 55.8
ClCG06G006500 Citrullus lanatus HOM05D002305 ORTHO05D002528 4.1e-06 55.8 59 52.5
Nn1g02448 Nelumbo nucifera HOM05D002305 ORTHO05D002528 4.1e-06 55.8 59 52.5
Os04g0345800 Oryza sativa ssp. japonica HOM05D002305 ORTHO05D002528 4.1e-06 55.8 64 50.0
SMO367G0635 Selaginella moellendorffii HOM05D002305 ORTHO05D002528 4.1e-06 55.8 53 52.8
AagrBONN_evm.TU.Sc2ySwM_228.4609 Anthoceros agrestis HOM05D002305 ORTHO05D002528 5.4e-06 55.5 60 46.7
Lj6A645T38 Lonicera japonica HOM05D002305 ORTHO05D002528 5.4e-06 55.5 48 54.2
Rhsim04G0197500 Rhododendron simsii HOM05D002305 ORTHO05D002528 5.4e-06 55.5 59 52.5
AT5G43850 Arabidopsis thaliana HOM05D002305 ORTHO05D002528 7.1e-06 55.1 59 49.2
Thhalv10003271m.g Eutrema salsugineum HOM05D002305 ORTHO05D002528 7.1e-06 55.1 64 46.9
Gohir.A09G218900 Gossypium hirsutum HOM05D002305 ORTHO05D002528 7.1e-06 55.1 59 52.5
Gorai.006G242300 Gossypium raimondii HOM05D002305 ORTHO05D002528 7.1e-06 55.1 59 52.5
Solyc09g082630.3 Solanum lycopersicum HOM05D002305 ORTHO05D002528 7.1e-06 55.1 58 50.0


User provided reference genes

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