Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 1.2e-121 439.9 221 100.0
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 3.6e-115 418.3 221 95.9
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 3.6e-115 418.3 221 95.9
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 1.3e-109 399.8 223 89.7
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 5.1e-109 397.9 225 89.8
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 6.6e-109 397.5 223 88.8
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 6.6e-109 397.5 223 88.8
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 1.1e-108 396.7 225 89.3
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 1.5e-108 396.4 223 88.3
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.5e-108 396.4 225 89.3
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 2.1e-107 392.5 225 88.0
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 4.0e-106 388.3 225 87.1
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 4.5e-105 384.8 225 86.7
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 7.6e-105 384.0 225 87.6
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 9.6e-100 367.1 225 82.2
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 4.0e-98 361.7 223 82.1
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 2.0e-97 359.4 273 71.4
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 4.5e-97 358.2 223 81.6
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.3e-96 356.7 225 81.3
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 2.2e-96 355.9 223 80.7
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 8.4e-96 354.0 223 80.7
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 8.4e-96 354.0 223 80.7
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 1.9e-95 352.8 223 80.3
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 5.5e-95 351.3 225 79.6
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 5.5e-95 351.3 223 79.8
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 1.2e-94 350.1 223 76.7
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 4.6e-94 348.2 223 78.9
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 6.7e-93 344.4 208 82.2
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 6.7e-93 344.4 209 79.9
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 6.7e-93 344.4 225 76.9
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 8.7e-93 344.0 224 74.1
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 1.5e-92 343.2 211 78.7
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 2.5e-92 342.4 223 76.2
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 2.5e-92 342.4 209 79.9
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 3.3e-92 342.0 222 76.6
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 9.6e-92 340.5 223 76.2
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.3e-91 340.1 219 75.3
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.3e-91 340.1 223 75.8
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 3.7e-91 338.6 222 75.2
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 4.8e-91 338.2 223 75.8
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 6.3e-91 337.8 209 78.0
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 8.2e-91 337.4 218 76.1
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 1.1e-90 337.0 214 78.5
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 1.4e-90 336.7 220 75.5
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.8e-90 336.3 209 78.9
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 2.4e-90 335.9 212 78.3
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 3.1e-90 335.5 208 79.8
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 3.1e-90 335.5 213 77.0
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 4.1e-90 335.1 209 78.5
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 4.1e-90 335.1 220 75.0
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 4.1e-90 335.1 220 75.0
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 5.3e-90 334.7 206 80.6
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 6.9e-90 334.3 212 77.8
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 6.9e-90 334.3 221 76.0
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 9.0e-90 334.0 258 66.7
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 1.2e-89 333.6 218 74.3
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 1.5e-89 333.2 225 74.2
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 2.0e-89 332.8 209 76.6
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 2.0e-89 332.8 223 73.5
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 2.6e-89 332.4 209 77.5
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 2.6e-89 332.4 225 74.7
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 3.4e-89 332.0 221 73.8
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 4.5e-89 331.6 221 73.8
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 7.6e-89 330.9 212 75.9
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 1.3e-88 330.1 206 76.7
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 1.7e-88 329.7 209 76.6
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 1.7e-88 329.7 212 76.4
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 2.2e-88 329.3 218 72.9
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 2.9e-88 328.9 212 76.4
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 3.8e-88 328.6 212 76.4
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 6.5e-88 327.8 223 72.6
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 1.9e-87 326.2 220 72.7
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 1.9e-87 326.2 208 76.9
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 1.9e-87 326.2 220 73.6
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 2.5e-87 325.9 212 74.1
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 2.5e-87 325.9 208 76.0
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 3.2e-87 325.5 209 75.6
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 5.5e-87 324.7 209 75.6
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 9.3e-87 323.9 220 72.3
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 1.2e-86 323.6 210 75.7
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 1.6e-86 323.2 223 74.4
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 2.7e-86 322.4 208 74.5
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 3.6e-86 322.0 209 75.1
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 4.6e-86 321.6 209 75.1
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 4.6e-86 321.6 223 73.1
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 7.9e-86 320.9 210 75.2
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 7.9e-86 320.9 222 71.2
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 1.3e-85 320.1 222 71.6
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 1.3e-85 320.1 209 75.1
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 1.3e-85 320.1 209 74.6
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 1.8e-85 319.7 220 70.9
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 1.8e-85 319.7 211 73.9
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 1.1e-84 317.0 219 71.2
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 5.7e-84 314.7 220 70.9
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 1.3e-83 313.5 223 70.9
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 8.2e-83 310.8 264 61.7
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 1.4e-82 310.1 185 80.0
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 2.0e-81 306.2 219 68.0
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 5.9e-81 304.7 208 73.1
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.0e-80 303.9 219 68.5
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.3e-80 303.5 209 70.8
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.2e-80 302.8 207 71.5
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 2.2e-80 302.8 213 69.0
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 1.9e-79 299.7 206 70.4
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 7.2e-79 297.7 221 69.2
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 9.4e-79 297.4 214 67.8
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 1.0e-77 293.9 223 69.5
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 3.9e-77 292.0 216 67.6
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 8.8e-77 290.8 223 66.8
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 2.8e-75 285.8 223 63.2
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 5.3e-74 281.6 181 75.1
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 1.0e-72 277.3 207 68.1
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.7e-72 276.6 210 66.2
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 5.0e-72 275.0 209 65.1
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.7e-64 250.0 175 69.1
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 4.1e-58 228.8 210 56.7
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 1.7e-56 223.4 142 78.2
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 9.4e-55 217.6 118 92.4
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.8e-51 206.1 126 78.6
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 3.7e-51 205.7 233 48.5
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 7.0e-50 201.4 126 75.4
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 4.5e-49 198.7 119 81.5
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 2.2e-48 196.4 120 78.3
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 2.1e-46 189.9 132 72.0
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.3e-43 180.6 127 68.5
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 1.9e-39 166.8 91 89.0
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 1.9e-39 166.8 152 57.9
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 2.8e-38 162.9 129 67.4
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 3.0e-37 159.5 109 74.3
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 5.0e-32 142.1 184 41.8
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.2e-30 137.5 95 72.6
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 2.8e-30 136.3 91 71.4
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 8.0e-30 134.8 82 81.7
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 6.8e-29 131.7 204 41.2
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 6.4e-27 125.2 189 37.0
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 8.3e-27 124.8 77 76.6
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 1.4e-26 124.0 214 35.5
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 4.1e-26 122.5 90 77.8
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 5.4e-26 122.1 219 35.2
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 1.0e-24 117.9 192 39.6
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 4.3e-23 112.5 195 37.4
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 3.6e-22 109.4 88 62.5
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 4.7e-22 109.0 216 35.2
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 8.1e-22 108.2 71 71.8
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 8.1e-22 108.2 71 76.1
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 1.8e-21 107.1 193 34.7
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 2.3e-21 106.7 213 33.8
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 4.0e-21 105.9 93 57.0
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 9.8e-20 101.3 89 68.5
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 4.1e-18 95.9 83 57.8
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 5.4e-18 95.5 172 33.7
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 5.4e-18 95.5 89 65.2
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 7.1e-18 95.1 60 73.3
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 1.0e-16 91.3 73 63.0
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 3.0e-16 89.7 59 74.6
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 4.3e-15 85.9 76 55.3
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 1.2e-14 84.3 46 84.8
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 1.2e-14 84.3 57 64.9
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 8.1e-14 81.6 53 73.6
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 2.9e-11 73.2 65 53.8
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 2.9e-11 73.2 65 53.8
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 3.8e-11 72.8 64 54.7
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 8.4e-11 71.6 72 52.8
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 1.1e-10 71.2 59 57.6
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 1.4e-10 70.9 58 63.8
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 5.4e-10 68.9 74 47.3
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 1.0e-08 64.7 57 56.1
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 1.7e-08 63.9 39 76.9
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 6.6e-08 62.0 56 55.4


User provided reference genes

Program Settings