Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18321 Brassica carinata HOM05D003376 ORTHO05D001185 1.6e-258 895.6 455 100.0
BcaB07g32859 Brassica carinata HOM05D003376 ORTHO05D001185 9.0e-185 650.6 379 90.0
A05p12450 Brassica napus HOM05D003376 ORTHO05D001185 1.6e-170 603.2 474 68.4
A06p25220 Brassica napus HOM05D003376 ORTHO05D001185 6.9e-169 597.8 474 67.5
Thhalv10001103m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.1e-163 580.5 477 66.0
AL88U10020 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 1.5e-152 543.5 479 61.8
Thhalv10000496m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 6.1e-149 531.6 452 64.8
AL1G57140 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 5.7e-147 525.0 455 63.3
BcaC06g35708 Brassica carinata HOM05D003376 ORTHO05D001185 4.7e-141 505.4 426 64.1
Thhalv10028343m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.3e-140 503.1 455 60.2
AL88U10010 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 4.0e-132 475.7 455 57.4
A05p12400 Brassica napus HOM05D003376 ORTHO05D001185 1.3e-130 470.7 415 64.1
AL6G42760 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.0e-128 463.4 477 55.6
AL6G37690 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 4.2e-126 455.7 477 54.5
A09p27420 Brassica napus HOM05D003376 ORTHO05D001185 3.0e-124 449.5 377 66.6
AL8G17310 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 4.0e-124 449.1 422 59.5
AL8G17320 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 1.1e-118 431.0 390 62.1
BcaB05g23142 Brassica carinata HOM05D003376 ORTHO05D001185 8.3e-114 414.8 367 64.3
BcaB01g00899 Brassica carinata HOM05D003376 ORTHO05D001185 3.5e-112 409.5 335 67.5
BcaC09g49326 Brassica carinata HOM05D003376 ORTHO05D001185 6.0e-104 382.1 350 63.1
C03p85050 Brassica napus HOM05D003376 ORTHO05D001185 1.1e-97 361.3 346 60.1
Thhalv10003417m.g Eutrema salsugineum HOM05D003376 ORTHO05D000048 4.1e-89 332.8 445 44.7
C07p11790 Brassica napus HOM05D003376 ORTHO05D001185 7.1e-89 332.0 338 57.7
Thhalv10002934m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.6e-88 330.9 337 57.9
BcaC02g10207 Brassica carinata HOM05D003376 ORTHO05D001185 1.3e-87 327.8 360 54.4
BcaB05g22757 Brassica carinata HOM05D003376 ORTHO05D001185 2.6e-83 313.5 220 72.7
C04p09000 Brassica napus HOM05D003376 ORTHO05D001185 9.9e-83 311.6 292 60.3
BolC4t22489H Brassica oleracea HOM05D003376 ORTHO05D001185 9.9e-83 311.6 292 60.3
Thhalv10027218m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 6.4e-82 308.9 296 60.1
BolC4t24704H Brassica oleracea HOM05D003376 ORTHO05D001185 1.2e-77 294.7 251 63.7
A04p12690 Brassica napus HOM05D003376 ORTHO05D001185 3.4e-75 286.6 299 57.9
BraA04t16927Z Brassica rapa HOM05D003376 ORTHO05D001185 3.4e-75 286.6 299 57.9
BolC1t03800H Brassica oleracea HOM05D003376 ORTHO05D001185 4.4e-75 286.2 260 61.9
BolC7t41653H Brassica oleracea HOM05D003376 ORTHO05D001185 1.3e-74 284.6 174 77.6
BraA06t26272Z Brassica rapa HOM05D003376 ORTHO05D001185 3.0e-71 273.5 314 53.5
BraA01t02300Z Brassica rapa HOM05D003376 ORTHO05D001185 8.7e-71 271.9 266 60.9
A01p23930 Brassica napus HOM05D003376 ORTHO05D001185 9.6e-70 268.5 246 63.0
AL8G17340 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 1.5e-67 261.2 221 62.4
BraA06t26274Z Brassica rapa HOM05D003376 ORTHO05D001185 2.8e-61 240.4 180 69.4
Thhalv10000705m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 6.2e-61 239.2 252 55.6
BcaB01g00422 Brassica carinata HOM05D003376 ORTHO05D001185 3.8e-58 229.9 163 72.4
BolC5t32825H Brassica oleracea HOM05D003376 ORTHO05D001185 4.9e-58 229.6 183 65.0
C05p40810 Brassica napus HOM05D003376 ORTHO05D001185 1.4e-57 228.0 183 65.0
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 4.6e-56 223.0 258 54.3
BolC1t03750H Brassica oleracea HOM05D003376 ORTHO05D001185 4.6e-56 223.0 113 90.3
BcaC02g12005 Brassica carinata HOM05D003376 ORTHO05D001185 8.2e-53 212.2 141 72.3
A01p23920 Brassica napus HOM05D003376 ORTHO05D001185 9.0e-44 182.2 112 76.8
C01p37900 Brassica napus HOM05D003376 ORTHO05D001185 2.9e-42 177.2 212 54.7
BolC1t03751H Brassica oleracea HOM05D003376 ORTHO05D001185 2.9e-42 177.2 212 54.7
C04p31540 Brassica napus HOM05D003376 ORTHO05D001185 1.2e-40 171.8 112 75.0
BolC6t36227H Brassica oleracea HOM05D003376 ORTHO05D001185 1.2e-40 171.8 148 64.2
Thhalv10028029m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 9.1e-36 155.6 459 30.7
Atru.chr7.181 Acer truncatum HOM05D005324 ORTHO05D001185 1.0e-34 152.1 471 29.7
BcaB05g23141 Brassica carinata HOM05D003376 ORTHO05D001185 8.5e-34 149.1 104 69.2
Lj6g0018849 Lotus japonicus HOM05D005324 ORTHO05D001185 8.5e-34 149.1 465 28.2
Lj2g0007658 Lotus japonicus HOM05D005324 ORTHO05D001185 1.1e-33 148.7 465 28.2
Thhalv10012231m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.5e-33 147.5 460 30.0
BolC7t41652H Brassica oleracea HOM05D003376 ORTHO05D001185 2.7e-32 144.1 92 71.7
HanXRQChr09g0267851 Helianthus annuus HOM05D003376 ORTHO05D001185 3.9e-31 140.2 468 27.1
BcaC02g10208 Brassica carinata HOM05D003376 ORTHO05D001185 5.1e-31 139.8 89 73.0
HanXRQChr09g0262491 Helianthus annuus HOM05D003376 ORTHO05D001185 6.7e-31 139.4 470 27.2
HanXRQChr09g0262521 Helianthus annuus HOM05D003376 ORTHO05D001185 2.6e-30 137.5 468 26.9
HanXRQChr09g0262551 Helianthus annuus HOM05D003376 ORTHO05D001185 1.3e-29 135.2 468 26.7
HanXRQChr09g0262531 Helianthus annuus HOM05D003376 ORTHO05D001185 2.2e-29 134.4 470 26.8
HanXRQChr09g0262541 Helianthus annuus HOM05D003326 ORTHO05D001185 2.2e-29 134.4 470 26.8
Thhalv10003477m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 6.3e-29 132.9 442 28.5
BraA09t38518Z Brassica rapa HOM05D003376 ORTHO05D001185 1.4e-28 131.7 89 69.7
Atru.chr3.2329 Acer truncatum HOM05D003326 ORTHO05D001185 3.5e-27 127.1 445 27.9
Cc00_g28290 Coffea canephora HOM05D003326 ORTHO05D001185 4.5e-27 126.7 497 26.6
Ca_23895_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.8e-26 123.6 461 24.9
Lj4g0024804 Lotus japonicus HOM05D005324 ORTHO05D001185 5.0e-26 123.2 461 24.7
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 8.5e-26 122.5 483 26.1
BolC4t23953H Brassica oleracea HOM05D003376 ORTHO05D001185 2.1e-24 117.9 72 75.0
BolC4t23955H Brassica oleracea HOM05D003376 ORTHO05D001185 2.7e-24 117.5 96 59.4
Thhalv10028344m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 6.7e-23 112.8 117 40.2
Cc07_g21310 Coffea canephora HOM05D003376 ORTHO05D011089 8.8e-23 112.5 488 25.2
Glyma.06G234900 Glycine max HOM05D005324 ORTHO05D001185 2.6e-22 110.9 442 25.6
HanXRQChr10g0281981 Helianthus annuus HOM05D003376 ORTHO05D001185 7.4e-22 109.4 471 25.7
BolC1t03801H Brassica oleracea HOM05D003376 ORTHO05D001185 2.8e-21 107.5 122 45.1
Thhalv10023188m.g Eutrema salsugineum HOM05D003376 ORTHO05D000002 3.7e-21 107.1 252 27.0
BolC7t43332H Brassica oleracea HOM05D003376 ORTHO05D001185 4.8e-21 106.7 105 51.4
Ca_14156_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.1e-20 105.5 438 24.0
ECA236G2821 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.0e-20 102.8 156 36.5
Cc00_g09810 Coffea canephora HOM05D003326 ORTHO05D001185 1.6e-19 101.7 484 25.4
BraA01t02207Z Brassica rapa HOM05D003376 ORTHO05D001185 2.6e-19 100.9 96 59.4
BcaB05g24586 Brassica carinata HOM05D003376 ORTHO05D001185 1.3e-18 98.6 77 61.0
Ca_11659_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.7e-18 98.2 117 36.8
Ca_24116_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.9e-18 97.4 475 22.9
BcaB08g35327 Brassica carinata HOM05D003376 ORTHO05D001185 8.5e-18 95.9 77 58.4
Atru.chr5.1825 Acer truncatum HOM05D005324 ORTHO05D001185 3.2e-17 94.0 117 38.5
BolC4t23954H Brassica oleracea HOM05D003376 ORTHO05D001185 4.2e-17 93.6 64 68.8
Atru.chr13.2462 Acer truncatum HOM05D005324 ORTHO05D001185 9.4e-17 92.4 156 30.1
Lj3g0011497 Lotus japonicus HOM05D005324 ORTHO05D001185 9.4e-17 92.4 181 27.1
BcaB05g24045 Brassica carinata HOM05D003326 ORTHO05D001185 1.2e-16 92.0 108 47.2
Lj6g0006708 Lotus japonicus HOM05D005324 ORTHO05D001185 2.7e-16 90.9 456 23.7
Atru.chr4.959 Acer truncatum HOM05D005324 ORTHO05D001185 4.7e-16 90.1 316 29.7
Cc00_g34090 Coffea canephora HOM05D005324 ORTHO05D001185 6.1e-16 89.7 157 33.1
Lj6g0011364 Lotus japonicus HOM05D005324 ORTHO05D001185 6.1e-16 89.7 378 25.1
Lj4g0014350 Lotus japonicus HOM05D005324 ORTHO05D001185 1.4e-15 88.6 194 26.3
A09p25430 Brassica napus HOM05D003376 ORTHO05D001185 4.0e-15 87.0 74 59.5
Ca_14742_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.2e-15 86.7 398 22.1
Ca_18104_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 8.8e-15 85.9 454 24.2
Atru.chr1.2264 Acer truncatum HOM05D005324 ORTHO05D001185 1.2e-14 85.5 98 39.8
A09p31910 Brassica napus HOM05D003376 ORTHO05D001185 1.2e-14 85.5 54 72.2
Ca_05875_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.5e-14 85.1 421 24.2
Ca_13200_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.5e-14 85.1 189 27.5
Ca_29875_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.5e-14 85.1 189 27.5
Glyma.19G076000 Glycine max HOM05D005324 ORTHO05D001185 1.5e-14 85.1 116 36.2
Atru.chr9.334 Acer truncatum HOM05D005324 ORTHO05D001185 2.6e-14 84.3 98 39.8
Medtr3g436690 Medicago truncatula HOM05D005324 ORTHO05D001185 7.5e-14 82.8 103 37.9
Atru.chr4.1769 Acer truncatum HOM05D005324 ORTHO05D001185 2.8e-13 80.9 99 37.4
Duzib084G0121 Durio zibethinus HOM05D028332 ORTHO05D029258 4.8e-13 80.1 175 35.4
Atru.chr10.1416 Acer truncatum HOM05D005324 ORTHO05D001185 3.1e-12 77.4 70 47.1
Lj1g0026229 Lotus japonicus HOM05D005324 ORTHO05D001185 5.3e-12 76.6 81 35.8
Ca_14697_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-11 75.5 87 34.5
ECA246G2607 Erigeron canadensis HOM05D003326 ORTHO05D001185 2.0e-11 74.7 129 34.9
Ca_14763_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.5e-11 73.6 95 32.6
Cc00_g17730 Coffea canephora HOM05D003326 ORTHO05D001185 1.0e-10 72.4 459 24.0
Thhalv10002230m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.2e-10 71.2 99 33.3
Ca_03092_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.0e-10 70.1 370 23.2
Ca_07874_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.0e-10 70.1 188 23.9
Ca_11652_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.0e-10 70.1 395 24.1
Atru.chr3.3306 Acer truncatum HOM05D000477 ORTHO05D001185 6.5e-10 69.7 84 38.1
Ca_15184_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 8.5e-10 69.3 101 32.7
Ca_22549_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 8.5e-10 69.3 434 22.8
Ca_13202_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.5e-09 68.6 82 39.0
Ca_29877_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.5e-09 68.6 82 39.0
Medtr4g103910 Medicago truncatula HOM05D005324 ORTHO05D001185 3.2e-09 67.4 94 33.0
C04p31550 Brassica napus HOM05D003376 ORTHO05D001185 4.2e-09 67.0 65 47.7
Ca_05672_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.2e-09 66.2 176 26.1
Ca_21962_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.6e-08 65.1 82 35.4
Atru.chr9.333 Acer truncatum HOM05D005324 ORTHO05D001185 3.6e-08 63.9 217 30.0
Lj3g0022640 Lotus japonicus HOM05D005324 ORTHO05D001185 6.1e-08 63.2 73 32.9
ECA236G2931 Erigeron canadensis HOM05D003376 ORTHO05D001185 1.4e-07 62.0 311 22.8
ECA238G1666 Erigeron canadensis HOM05D003376 ORTHO05D001185 1.4e-07 62.0 70 40.0
A09p31900 Brassica napus HOM05D003376 ORTHO05D001185 3.0e-07 60.8 46 58.7
BraA09t38730Z Brassica rapa HOM05D003376 ORTHO05D001185 3.0e-07 60.8 46 58.7
HanXRQChr09g0262501 Helianthus annuus HOM05D003376 ORTHO05D001185 3.0e-07 60.8 167 29.9
Ca_24087_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.8e-07 59.7 74 35.1
Cc04_g13130 Coffea canephora HOM05D003326 ORTHO05D001185 6.8e-07 59.7 399 24.6
Atru.chr9.596 Acer truncatum HOM05D005324 ORTHO05D001185 8.8e-07 59.3 455 21.8
Ca_23845_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 8.8e-07 59.3 115 29.6
ECA248G1318 Erigeron canadensis HOM05D003376 ORTHO05D001185 8.8e-07 59.3 64 43.8
Ca_25846_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-06 58.9 436 20.0
Glyma.11G236000 Glycine max HOM05D005324 ORTHO05D001185 1.2e-06 58.9 77 35.1
Cc04_g10970 Coffea canephora HOM05D003376 ORTHO05D001185 2.0e-06 58.2 76 42.1
Cc00_g06960 Coffea canephora HOM05D003326 ORTHO05D001185 2.6e-06 57.8 139 30.2
Thhalv10001272m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 7.5e-06 56.2 173 24.9


User provided reference genes

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