Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 6.6e-63 243.8 118 100.0
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 1.1e-57 226.5 117 92.3
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 1.0e-55 219.9 117 90.6
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 1.0e-55 219.9 117 90.6
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 2.3e-55 218.8 118 90.7
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 3.0e-55 218.4 117 89.7
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 8.6e-55 216.9 117 88.9
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 1.1e-54 216.5 118 89.8
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 4.3e-54 214.5 117 88.9
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 9.5e-54 213.4 118 89.0
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 2.8e-53 211.8 117 88.0
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 3.6e-53 211.5 119 89.9
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 3.6e-53 211.5 117 88.0
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 8.0e-53 210.3 118 86.4
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 8.0e-53 210.3 118 86.4
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 8.9e-52 206.8 120 87.5
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 4.4e-51 204.5 117 86.3
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 1.3e-50 203.0 119 84.9
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 1.5e-46 189.5 117 79.5
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 1.6e-40 169.5 103 78.6
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 1.1e-38 163.3 118 67.8
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 5.2e-36 154.5 117 60.7
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 1.2e-35 153.3 117 61.5
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 5.8e-35 151.0 117 63.2
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 1.7e-34 149.4 117 59.0
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 2.9e-34 148.7 117 62.4
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 2.9e-34 148.7 117 61.5
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 2.9e-34 148.7 117 59.8
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 2.9e-34 148.7 116 59.5
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 2.9e-34 148.7 117 59.8
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 3.8e-34 148.3 117 60.7
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 3.8e-34 148.3 117 59.0
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 3.8e-34 148.3 117 61.5
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 3.8e-34 148.3 117 60.7
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 4.9e-34 147.9 116 60.3
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 8.4e-34 147.1 117 60.7
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 1.4e-33 146.4 117 60.7
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.4e-33 146.4 117 60.7
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.4e-33 146.4 117 60.7
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 1.9e-33 146.0 120 56.7
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 1.9e-33 146.0 120 56.7
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 1.9e-33 146.0 117 62.4
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.9e-33 146.0 117 60.7
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 1.9e-33 146.0 117 60.7
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 1.9e-33 146.0 117 60.7
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 1.9e-33 146.0 117 60.7
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 2.4e-33 145.6 117 61.5
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 2.4e-33 145.6 117 59.8
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 2.4e-33 145.6 117 57.3
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 2.4e-33 145.6 118 60.2
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 3.2e-33 145.2 126 57.9
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 3.2e-33 145.2 117 58.1
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 3.2e-33 145.2 118 60.2
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 3.2e-33 145.2 117 58.1
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 4.1e-33 144.8 117 57.3
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 4.1e-33 144.8 117 59.8
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 5.4e-33 144.4 117 60.7
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 7.1e-33 144.1 117 58.1
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 7.1e-33 144.1 117 58.1
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 9.2e-33 143.7 117 59.8
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 1.2e-32 143.3 117 60.7
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 1.6e-32 142.9 118 61.0
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 1.6e-32 142.9 117 58.1
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 2.1e-32 142.5 116 59.5
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 3.5e-32 141.7 117 55.6
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 6.0e-32 141.0 117 55.6
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 6.0e-32 141.0 116 57.8
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 6.0e-32 141.0 117 56.4
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 7.8e-32 140.6 117 54.7
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 1.0e-31 140.2 118 57.6
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 1.3e-31 139.8 120 60.0
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 1.7e-31 139.4 117 56.4
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 2.3e-31 139.0 117 54.7
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.3e-31 139.0 122 52.5
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 2.3e-31 139.0 117 53.8
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 2.3e-31 139.0 122 56.6
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 5.1e-31 137.9 129 55.8
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 6.6e-31 137.5 117 57.3
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 6.6e-31 137.5 117 56.4
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 8.6e-31 137.1 117 55.6
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 8.6e-31 137.1 120 55.0
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 8.6e-31 137.1 119 56.3
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 1.5e-30 136.3 125 53.6
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 2.5e-30 135.6 117 57.3
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 2.5e-30 135.6 116 54.3
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 2.5e-30 135.6 116 50.9
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 4.3e-30 134.8 116 53.4
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 5.6e-30 134.4 117 51.3
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 1.2e-29 133.3 116 52.6
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 1.2e-29 133.3 116 51.7
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 1.6e-29 132.9 120 54.2
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 2.1e-29 132.5 117 56.4
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 2.8e-29 132.1 118 55.9
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 3.6e-29 131.7 80 85.0
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 6.2e-29 131.0 117 48.7
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.1e-28 130.2 117 56.4
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 1.4e-28 129.8 117 53.0
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 1.8e-28 129.4 117 49.6
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 3.1e-28 128.6 128 51.6
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 6.9e-28 127.5 80 82.5
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 6.9e-28 127.5 117 52.1
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 1.2e-27 126.7 80 83.8
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 1.2e-27 126.7 80 83.8
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 1.5e-27 126.3 119 54.6
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.5e-27 126.3 117 49.6
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 2.0e-27 125.9 116 49.1
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 2.0e-27 125.9 120 50.0
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 5.8e-27 124.4 117 52.1
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 7.6e-27 124.0 80 81.2
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.3e-26 123.2 117 53.0
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 1.3e-26 123.2 122 49.2
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 2.2e-26 122.5 119 49.6
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 2.9e-26 122.1 116 49.1
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 3.8e-26 121.7 117 50.4
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 1.4e-25 119.8 80 78.8
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 1.4e-25 119.8 80 78.8
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 1.4e-25 119.8 117 50.4
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 1.4e-25 119.8 123 49.6
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 7.1e-25 117.5 117 47.9
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 4.6e-24 114.8 117 51.3
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.3e-23 113.2 117 47.0
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 5.1e-23 111.3 127 45.7
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 5.1e-23 111.3 127 45.7
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 5.1e-23 111.3 127 45.7
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 1.9e-22 109.4 105 53.3
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 2.5e-22 109.0 117 45.3
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 4.3e-22 108.2 117 46.2
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 2.1e-21 105.9 119 46.2
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 4.0e-20 101.7 97 47.4
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 2.9e-18 95.5 115 46.1
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 8.4e-18 94.0 122 40.2
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.1e-17 93.6 128 39.8
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.1e-17 93.6 128 39.8
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 2.4e-17 92.4 113 40.7
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 2.1e-16 89.4 128 35.9
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 2.7e-16 89.0 113 44.2
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 3.5e-16 88.6 212 28.8
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 2.3e-15 85.9 117 38.5
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 1.8e-12 76.3 144 34.0
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 3.8e-10 68.6 92 43.5
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 7.9e-08 60.8 60 48.3
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 8.7e-07 57.4 140 30.0
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 7.4e-06 54.3 40 62.5


User provided reference genes

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