Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18168 Brassica carinata HOM05D001003 ORTHO05D027039 2.4e-75 285.4 146 100.0
BcaB05g24387 Brassica carinata HOM05D001003 ORTHO05D027039 7.4e-48 194.1 123 86.2
BcaB03g15893 Brassica carinata HOM05D001003 ORTHO05D003884 2.9e-36 155.6 112 79.5
A07p35720 Brassica napus HOM05D001003 ORTHO05D003884 2.9e-36 155.6 112 79.5
BraA07t31159Z Brassica rapa HOM05D001003 ORTHO05D003884 2.9e-36 155.6 112 79.5
BcaB03g15903 Brassica carinata HOM05D001003 ORTHO05D003884 3.8e-36 155.2 112 79.5
C06p40510 Brassica napus HOM05D001003 ORTHO05D003884 2.5e-35 152.5 112 78.6
BolC6t39380H Brassica oleracea HOM05D001003 ORTHO05D003884 2.5e-35 152.5 112 78.6
AT1G69420 Arabidopsis thaliana HOM05D001003 ORTHO05D003884 3.0e-33 145.6 111 76.6
Sp5g24470 Schrenkiella parvula HOM05D001003 ORTHO05D003884 3.0e-33 145.6 111 77.5
Thhalv10018316m.g Eutrema salsugineum HOM05D001003 ORTHO05D003884 6.7e-33 144.4 111 76.6
AL2G28530 Arabidopsis lyrata HOM05D001003 ORTHO05D003884 8.8e-33 144.1 111 75.7
Carub.0002s1602 Capsella rubella HOM05D001003 ORTHO05D003884 4.3e-32 141.7 112 76.8
CARHR062300 Cardamine hirsuta HOM05D001003 ORTHO05D003884 4.1e-30 135.2 112 74.1
BcaB03g15471 Brassica carinata HOM05D001003 ORTHO05D003884 1.1e-27 127.1 111 71.2
BcaB05g24450 Brassica carinata HOM05D001003 ORTHO05D003884 7.9e-26 120.9 111 68.5
BcaC08g45893 Brassica carinata HOM05D001003 ORTHO05D003884 2.0e-24 116.3 111 68.5
C06p36980 Brassica napus HOM05D001003 ORTHO05D003884 2.0e-24 116.3 111 68.5
BolC6t38808H Brassica oleracea HOM05D001003 ORTHO05D003884 2.0e-24 116.3 111 68.5
THA.LOC104822031 Tarenaya hassleriana HOM05D001003 ORTHO05D003884 1.2e-21 107.1 119 58.0
BraA07t30790Z Brassica rapa HOM05D001003 ORTHO05D003884 2.0e-21 106.3 111 63.1
A02p15900 Brassica napus HOM05D001003 ORTHO05D003884 3.4e-21 105.5 113 64.6
C02p26350 Brassica napus HOM05D001003 ORTHO05D003884 5.9e-21 104.8 113 64.6
Aa31LG4G11450 Aethionema arabicum HOM05D001003 ORTHO05D003884 7.7e-21 104.4 123 60.2
BolC2t08708H Brassica oleracea HOM05D001003 ORTHO05D003884 1.0e-20 104.0 108 66.7
BcaC03g15082 Brassica carinata HOM05D001003 ORTHO05D003884 1.3e-20 103.6 113 63.7
THA.LOC104822032 Tarenaya hassleriana HOM05D001003 ORTHO05D003884 1.3e-20 103.6 119 57.1
BraA02t06643Z Brassica rapa HOM05D001003 ORTHO05D003884 1.7e-20 103.2 113 63.7
BolC4t23801H Brassica oleracea HOM05D001003 ORTHO05D027039 4.7e-18 95.1 111 59.5
COL.COLO4_27957 Corchorus olitorius HOM05D001003 ORTHO05D003884 6.1e-18 94.7 113 55.8
Thecc.02G338800 Theobroma cacao HOM05D001003 ORTHO05D003884 3.0e-17 92.4 113 54.0
C04p23070 Brassica napus HOM05D001003 ORTHO05D027039 3.9e-17 92.0 111 58.6
Duzib248G0508 Durio zibethinus HOM05D001003 ORTHO05D003884 1.1e-16 90.5 113 54.9
Ciclev10030950m.g Citrus clementina HOM05D001003 ORTHO05D003884 3.3e-16 89.0 113 53.1
THA.LOC104808647 Tarenaya hassleriana HOM05D001003 ORTHO05D003884 4.4e-16 88.6 121 54.5
Dinv16693 Davidia involucrata HOM05D001003 ORTHO05D003884 7.4e-16 87.8 117 53.0
Duzib251G0588 Durio zibethinus HOM05D001003 ORTHO05D003884 9.7e-16 87.4 113 54.0
Duzib268G0875 Durio zibethinus HOM05D001003 ORTHO05D003884 9.7e-16 87.4 113 54.0
Gohir.D04G190700 Gossypium hirsutum HOM05D001003 ORTHO05D003884 9.7e-16 87.4 113 51.3
Gorai.012G186100 Gossypium raimondii HOM05D001003 ORTHO05D003884 9.7e-16 87.4 113 51.3
Atru.chr11.1708 Acer truncatum HOM05D001003 ORTHO05D003884 4.8e-15 85.1 120 50.8
Cpa.g.sc1.74 Carica papaya HOM05D001003 ORTHO05D003884 4.8e-15 85.1 113 48.7
PGR016G0006 Punica granatum HOM05D001003 ORTHO05D003884 1.4e-14 83.6 113 51.3
QL03p069879 Quercus lobata HOM05D001003 ORTHO05D003884 3.1e-14 82.4 113 51.3
Haze_11951 Corylus avellana HOM05D001003 ORTHO05D003884 4.1e-14 82.0 113 50.4
Gohir.D13G078700 Gossypium hirsutum HOM05D001003 ORTHO05D003884 4.1e-14 82.0 111 51.4
Gorai.013G090000 Gossypium raimondii HOM05D001003 ORTHO05D003884 4.1e-14 82.0 111 51.4
TWI79G0452 Tripterygium wilfordii HOM05D001003 ORTHO05D003884 5.3e-14 81.6 113 53.1
Cfa008922 Carpinus fangiana HOM05D001003 ORTHO05D003884 7.0e-14 81.3 113 50.4
Hund25203 Selenicereus undatus HOM05D001003 ORTHO05D003884 7.0e-14 81.3 111 52.3
Hma1.2p1_0354F.1_g133760 Hydrangea macrophylla HOM05D001003 ORTHO05D003884 9.1e-14 80.9 111 53.2
A07p31630 Brassica napus HOM05D001003 ORTHO05D003884 1.6e-13 80.1 111 53.2
CANSAT64G2791 Cannabis sativa HOM05D001003 ORTHO05D003884 2.0e-13 79.7 113 49.6
Hma1.2p1_0357F.1_g134320 Hydrangea macrophylla HOM05D001003 ORTHO05D003884 3.5e-13 79.0 112 51.8
Gohir.A13G078500 Gossypium hirsutum HOM05D001003 ORTHO05D003884 5.9e-13 78.2 106 51.9
Nn4g23292 Nelumbo nucifera HOM05D001003 ORTHO05D003884 5.9e-13 78.2 117 47.0
CSS0022092 Camellia sinensis var. sinensis HOM05D001003 ORTHO05D003884 7.7e-13 77.8 111 52.3
CSS0040469 Camellia sinensis var. sinensis HOM05D001003 ORTHO05D003884 7.7e-13 77.8 111 52.3
CiPaw.05G129200 Carya illinoinensis HOM05D001003 ORTHO05D003884 7.7e-13 77.8 113 49.6
Lj6A783T47 Lonicera japonica HOM05D001003 ORTHO05D003884 7.7e-13 77.8 117 48.7
TWI75G0974 Tripterygium wilfordii HOM05D001003 ORTHO05D003884 7.7e-13 77.8 113 51.3
Ah.03g134630 Amaranthus hybridus HOM05D001003 ORTHO05D003884 1.3e-12 77.0 111 51.4
Potri.008G091700 Populus trichocarpa HOM05D001003 ORTHO05D003884 1.3e-12 77.0 113 49.6
Ah.02g129330 Amaranthus hybridus HOM05D001003 ORTHO05D003884 1.7e-12 76.6 111 50.5
Prupe.1G280400 Prunus persica HOM05D001003 ORTHO05D003884 1.7e-12 76.6 113 50.4
AUR62005856 Chenopodium quinoa HOM05D001003 ORTHO05D003884 2.2e-12 76.3 111 49.5
AUR62032848 Chenopodium quinoa HOM05D001003 ORTHO05D003884 2.2e-12 76.3 111 49.5
FvH4_4g30660 Fragaria vesca HOM05D001003 ORTHO05D003884 2.2e-12 76.3 113 50.4
FAN12G4096 Fragaria x ananassa HOM05D001003 ORTHO05D003884 2.2e-12 76.3 113 50.4
PGSC0003DMG400028336 Solanum tuberosum HOM05D001003 ORTHO05D003884 2.9e-12 75.9 117 47.9
TAR371G0663 Trochodendron aralioides HOM05D001003 ORTHO05D003884 3.8e-12 75.5 112 48.2
Manes.01G031800 Manihot esculenta HOM05D001003 ORTHO05D003884 5.0e-12 75.1 113 47.8
RcHm_v2.0_Chr4g0439071 Rosa chinensis HOM05D001003 ORTHO05D003884 5.0e-12 75.1 113 50.4
Sed0009563 Sechium edule HOM05D001003 ORTHO05D003884 6.5e-12 74.7 118 47.5
Sopen05g007610 Solanum pennellii HOM05D001003 ORTHO05D003884 6.5e-12 74.7 117 47.0
Sabra08G0068700 Salix brachista HOM05D001003 ORTHO05D003884 8.5e-12 74.3 113 47.8
Nitab4.5_0005448g0010 Nicotiana tabacum HOM05D001003 ORTHO05D003884 1.1e-11 73.9 117 47.0
Sed0024561 Sechium edule HOM05D001003 ORTHO05D003884 1.1e-11 73.9 114 46.5
GSVIVG01012479001 Vitis vinifera HOM05D001003 ORTHO05D003884 1.1e-11 73.9 86 58.1
EL10Ac6g13274 Beta vulgaris HOM05D001003 ORTHO05D003884 1.5e-11 73.6 111 47.7
DCAR_007176 Daucus carota HOM05D001003 ORTHO05D003884 1.5e-11 73.6 116 46.6
Nn3g17345 Nelumbo nucifera HOM05D001003 ORTHO05D003884 1.5e-11 73.6 117 44.4
Manes.05G106700 Manihot esculenta HOM05D001003 ORTHO05D003884 1.9e-11 73.2 113 50.4
ClCG05G023970 Citrullus lanatus HOM05D001003 ORTHO05D003884 2.5e-11 72.8 113 48.7
FAN17G2835 Fragaria x ananassa HOM05D001003 ORTHO05D003884 3.2e-11 72.4 113 49.6
Peaxi162Scf00222g00123 Petunia axillaris HOM05D001003 ORTHO05D003884 3.2e-11 72.4 117 46.2
Potri.010G163200 Populus trichocarpa HOM05D001003 ORTHO05D003884 3.2e-11 72.4 113 47.8
Sc04g0007840 Simmondsia chinensis HOM05D001003 ORTHO05D003884 3.2e-11 72.4 109 48.6
CAN.G1638.2 Capsicum annuum HOM05D001003 ORTHO05D003884 4.2e-11 72.0 117 45.3
FAN22G1214 Fragaria x ananassa HOM05D001003 ORTHO05D003884 5.5e-11 71.6 113 47.8
TAR369G0619 Trochodendron aralioides HOM05D001003 ORTHO05D003884 5.5e-11 71.6 112 46.4
TAR626G0868 Trochodendron aralioides HOM05D001003 ORTHO05D003884 5.5e-11 71.6 112 47.3
Actinidia12306 Actinidia chinensis HOM05D001003 ORTHO05D003884 7.2e-11 71.2 118 48.3
THA.LOC104822904 Tarenaya hassleriana HOM05D001003 ORTHO05D003884 7.2e-11 71.2 120 44.2
MD13G1067800 Malus domestica HOM05D001003 ORTHO05D003884 1.6e-10 70.1 113 49.6
MELO3C012129.2 Cucumis melo HOM05D001003 ORTHO05D003884 2.7e-10 69.3 113 47.8
CsaV3_5G033080 Cucumis sativus L. HOM05D001003 ORTHO05D003884 2.7e-10 69.3 113 47.8
Cc11_g12510 Coffea canephora HOM05D001003 ORTHO05D003884 8.0e-10 67.8 115 47.0
SalBow2G2671 Salvia bowleyana HOM05D001003 ORTHO05D003884 1.0e-09 67.4 114 46.5
SalBow2G3343 Salvia bowleyana HOM05D001003 ORTHO05D003884 1.0e-09 67.4 114 46.5
Nitab4.5_0000391g0090 Nicotiana tabacum HOM05D001003 ORTHO05D003884 3.0e-09 65.9 115 45.2
ECA233G1502 Erigeron canadensis HOM05D001003 ORTHO05D003884 5.2e-09 65.1 114 50.0
Lalb_Chr17g0340901 Lupinus albus HOM05D001003 ORTHO05D003884 5.2e-09 65.1 113 45.1
HanXRQChr08g0211101 Helianthus annuus HOM05D001003 ORTHO05D003884 6.7e-09 64.7 112 47.3
CSS0002914 Camellia sinensis var. sinensis HOM05D001003 ORTHO05D003884 8.8e-09 64.3 118 45.8
Dinv34102 Davidia involucrata HOM05D001003 ORTHO05D003884 2.0e-08 63.2 48 75.0
MBI19_g43435_MAGBIO Magnolia biondii HOM05D001003 ORTHO05D003884 2.0e-08 63.2 124 41.1
Oeu021090.2 Olea europaea HOM05D001003 ORTHO05D003884 2.0e-08 63.2 116 44.8
PSO063G7182 Papaver somniferum HOM05D001003 ORTHO05D003884 2.0e-08 63.2 117 43.6
PSO063G7276 Papaver somniferum HOM05D001003 ORTHO05D003884 2.0e-08 63.2 117 43.6
TPR.G19939 Trifolium pratense HOM05D001003 ORTHO05D003884 2.0e-08 63.2 112 44.6
Aqoxy3G03506 Aquilegia oxysepala HOM05D001003 ORTHO05D003884 2.6e-08 62.8 115 45.2
Lsat_1_v5_gn_8_49341 Lactuca sativa HOM05D001003 ORTHO05D003884 2.6e-08 62.8 117 44.4
MBI16_g14989_MAGBIO Magnolia biondii HOM05D001003 ORTHO05D003884 2.6e-08 62.8 119 44.5
DCAR_030990 Daucus carota HOM05D001003 ORTHO05D003884 3.3e-08 62.4 114 43.0
Ca_26773_v3 Cicer arietinum L. HOM05D001003 ORTHO05D003884 5.7e-08 61.6 114 43.0
BcaB01g01548 Brassica carinata HOM05D001670 ORTHO05D096367 7.5e-08 61.2 82 51.2
Ca_25945_v3 Cicer arietinum L. HOM05D001003 ORTHO05D003884 1.3e-07 60.5 121 41.3
Gohir.A04G146300 Gossypium hirsutum HOM05D001003 ORTHO05D003884 1.3e-07 60.5 48 70.8
arahy.Tifrunner.gnm1.ann1.2M98J4 Arachis hypogaea HOM05D001003 ORTHO05D003884 1.7e-07 60.1 112 44.6
arahy.Tifrunner.gnm1.ann1.TY171H Arachis hypogaea HOM05D001003 ORTHO05D003884 1.7e-07 60.1 112 44.6
Psat2g127720 Pisum sativum HOM05D001003 ORTHO05D003884 2.8e-07 59.3 112 42.0
SGA_v2.0_scaffold36G14416 Striga asiatica HOM05D001003 ORTHO05D003884 2.8e-07 59.3 110 41.8
HanXRQChr12g0361761 Helianthus annuus HOM05D001003 ORTHO05D003884 3.7e-07 58.9 112 44.6
Medtr5g042870 Medicago truncatula HOM05D001003 ORTHO05D003884 4.8e-07 58.5 112 42.9
VMungo1215G0244 Vigna mungo HOM05D001003 ORTHO05D003884 4.8e-07 58.5 120 41.7
vmacro16352 Vaccinium macrocarpon HOM05D001003 ORTHO05D003884 6.3e-07 58.2 111 44.1
Glyma.20G030100 Glycine max HOM05D001003 ORTHO05D003884 1.4e-06 57.0 112 41.1
Lj2g0023172 Lotus japonicus HOM05D001003 ORTHO05D003884 1.4e-06 57.0 104 45.2
Lj2g0027573 Lotus japonicus HOM05D001003 ORTHO05D003884 1.4e-06 57.0 104 45.2
Phvul.002G091400 Phaseolus vulgaris HOM05D001003 ORTHO05D003884 1.4e-06 57.0 105 44.8
Rhsim12G0077800 Rhododendron simsii HOM05D001003 ORTHO05D003884 1.4e-06 57.0 45 71.1
Oeu016759.2 Olea europaea HOM05D001003 ORTHO05D003884 2.4e-06 56.2 88 45.5
Oeu057653.1 Olea europaea HOM05D001003 ORTHO05D003884 5.3e-06 55.1 79 50.6
arahy.Tifrunner.gnm1.ann1.J381VT Arachis hypogaea HOM05D001003 ORTHO05D003884 7.0e-06 54.7 107 43.9
Migut.L01236 Erythranthe guttata HOM05D001003 ORTHO05D003884 9.1e-06 54.3 109 44.0


User provided reference genes

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