Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18140 Brassica carinata HOM05D008073 ORTHO05D000309 1.5e-42 175.6 82 100.0
BcaC01g02160 Brassica carinata HOM05D008073 ORTHO05D000309 1.8e-27 125.6 67 86.6
C03p68050 Brassica napus HOM05D008073 ORTHO05D000309 1.8e-27 125.6 67 86.6
A02p37000 Brassica napus HOM05D008073 ORTHO05D000309 3.1e-19 98.2 67 65.7
BraA02t08687Z Brassica rapa HOM05D008073 ORTHO05D000309 3.1e-19 98.2 67 65.7
BcaC07g37763 Brassica carinata HOM05D008073 ORTHO05D000309 1.0e-17 93.2 67 59.7
BolC8t48149H Brassica oleracea HOM05D008073 ORTHO05D000309 1.0e-17 93.2 67 59.7
A01p24520 Brassica napus HOM05D008073 ORTHO05D000309 1.7e-17 92.4 64 62.5
C07p15530 Brassica napus HOM05D008073 ORTHO05D000309 1.4e-16 89.4 61 60.7
BcaB02g10845 Brassica carinata HOM05D008073 ORTHO05D000309 1.9e-16 89.0 65 60.0
BolC7t43639H Brassica oleracea HOM05D008073 ORTHO05D000309 1.9e-16 89.0 67 56.7
BcaC03g17928 Brassica carinata HOM05D008073 ORTHO05D000309 2.5e-16 88.6 61 63.9
BcaB02g11157 Brassica carinata HOM05D008073 ORTHO05D000309 3.2e-16 88.2 75 52.0
BcaB06g28160 Brassica carinata HOM05D008073 ORTHO05D000309 3.2e-16 88.2 61 59.0
BcaC06g35486 Brassica carinata HOM05D008073 ORTHO05D000309 3.2e-16 88.2 61 59.0
A04p08080 Brassica napus HOM05D008073 ORTHO05D000309 5.5e-16 87.4 56 62.5
BraA04t16496Z Brassica rapa HOM05D008073 ORTHO05D000309 5.5e-16 87.4 56 62.5
BcaB05g24067 Brassica carinata HOM05D008073 ORTHO05D031741 7.9e-15 83.6 67 56.7
BcaB06g28129 Brassica carinata HOM05D008073 ORTHO05D000309 7.9e-15 83.6 61 57.4
BcaC04g20561 Brassica carinata HOM05D008073 ORTHO05D000309 1.0e-14 83.2 65 56.9
BcaNung00231 Brassica carinata HOM05D008073 ORTHO05D000309 3.0e-14 81.6 67 53.7
C09p42090 Brassica napus HOM05D008073 ORTHO05D000309 5.1e-14 80.9 65 55.4
C01p21890 Brassica napus HOM05D008073 ORTHO05D000309 8.7e-14 80.1 56 62.5
BolC1t02116H Brassica oleracea HOM05D008073 ORTHO05D000309 8.7e-14 80.1 56 62.5
BcaB01g01612 Brassica carinata HOM05D008073 ORTHO05D000309 1.5e-13 79.3 62 51.6
BcaB03g16062 Brassica carinata HOM05D008073 ORTHO05D000309 2.5e-13 78.6 61 55.7
BcaB08g36370 Brassica carinata HOM05D008073 ORTHO05D000309 2.5e-13 78.6 62 51.6
BcaC06g36281 Brassica carinata HOM05D008073 ORTHO05D000309 3.7e-12 74.7 54 51.9
BcaB01g00830 Brassica carinata HOM05D008073 ORTHO05D000309 8.2e-12 73.6 62 54.8
A05p13640 Brassica napus HOM05D008073 ORTHO05D000309 3.1e-11 71.6 67 52.2
BcaB05g25086 Brassica carinata HOM05D008073 ORTHO05D000309 9.0e-11 70.1 67 47.8
BcaB06g26984 Brassica carinata HOM05D008073 ORTHO05D000309 9.0e-11 70.1 67 47.8
BcaB04g19293 Brassica carinata HOM05D008073 ORTHO05D000309 2.0e-10 68.9 62 53.2
BcaC03g14058 Brassica carinata HOM05D008073 ORTHO05D000309 2.0e-10 68.9 60 48.3
A07p31530 Brassica napus HOM05D008073 ORTHO05D000309 2.0e-10 68.9 71 47.9
BcaB05g23793 Brassica carinata HOM05D007774 ORTHO05D000309 2.6e-10 68.6 74 43.2
BcaNung00469 Brassica carinata HOM05D008073 ORTHO05D000309 2.6e-10 68.6 66 50.0
BcaC05g25280 Brassica carinata HOM05D008073 ORTHO05D000309 1.0e-09 66.6 66 45.5
C09p42360 Brassica napus HOM05D008073 ORTHO05D000309 1.0e-09 66.6 64 46.9
BolC9t57115H Brassica oleracea HOM05D008073 ORTHO05D000309 1.0e-09 66.6 64 46.9
AT1G52603 Arabidopsis thaliana HOM05D008073 ORTHO05D000309 1.3e-09 66.2 60 45.0
BolC3t19468H Brassica oleracea HOM05D008073 ORTHO05D000309 2.9e-09 65.1 61 52.5
BcaC09g50115 Brassica carinata HOM05D008073 ORTHO05D000309 5.0e-09 64.3 62 46.8
BcaC02g10427 Brassica carinata HOM05D007774 ORTHO05D000309 1.9e-08 62.4 66 43.9
BcaC03g14649 Brassica carinata HOM05D008073 ORTHO05D000309 1.9e-08 62.4 65 46.2
C07p05860 Brassica napus HOM05D001957 ORTHO05D002015 3.2e-08 61.6 35 62.9
BolC7t41880H Brassica oleracea HOM05D008073 ORTHO05D000309 3.2e-08 61.6 60 48.3
BcaC06g36173 Brassica carinata HOM05D007774 ORTHO05D000309 5.5e-08 60.8 51 51.0
BcaC06g36745 Brassica carinata HOM05D008073 ORTHO05D031794 5.5e-08 60.8 64 39.1
BcaC08g43835 Brassica carinata HOM05D007774 ORTHO05D000309 5.5e-08 60.8 51 51.0
BolC4t24443H Brassica oleracea HOM05D007774 ORTHO05D000309 9.3e-08 60.1 60 46.7
BcaB02g11463 Brassica carinata HOM05D001224 ORTHO05D000309 1.2e-07 59.7 52 46.2
BolC6t36100H Brassica oleracea HOM05D007774 ORTHO05D000309 1.2e-07 59.7 56 50.0
Solyc07g150127.1 Solanum lycopersicum HOM05D004040 ORTHO05D000309 1.6e-07 59.3 40 55.0
Lj2P720T1 Lonicera japonica HOM05D008126 ORTHO05D000309 3.5e-07 58.2 76 35.5
BcaB03g16083 Brassica carinata HOM05D007774 ORTHO05D000309 4.6e-07 57.8 73 42.5
BcaB05g24508 Brassica carinata HOM05D001224 ORTHO05D000309 4.6e-07 57.8 52 46.2
BcaB06g27506 Brassica carinata HOM05D007774 ORTHO05D000309 4.6e-07 57.8 52 48.1
BcaC06g34090 Brassica carinata HOM05D007774 ORTHO05D000309 4.6e-07 57.8 75 42.7
BcaB07g33250 Brassica carinata HOM05D007774 ORTHO05D000309 1.0e-06 56.6 56 48.2
Haze_20224 Corylus avellana HOM05D000484 ORTHO05D000346 1.0e-06 56.6 68 39.7
BcaB01g02010 Brassica carinata HOM05D007774 ORTHO05D000309 1.3e-06 56.2 73 42.5
BcaB06g27901 Brassica carinata HOM05D007774 ORTHO05D000309 1.3e-06 56.2 56 44.6
BcaB02g11205 Brassica carinata HOM05D007774 ORTHO05D000309 1.8e-06 55.8 52 46.2
BcaB02g11517 Brassica carinata HOM05D007774 ORTHO05D000309 1.8e-06 55.8 52 46.2
BcaB06g26508 Brassica carinata HOM05D007774 ORTHO05D000309 1.8e-06 55.8 52 46.2
BcaB06g26754 Brassica carinata HOM05D007774 ORTHO05D000309 1.8e-06 55.8 52 46.2
BcaB06g27138 Brassica carinata HOM05D007774 ORTHO05D000309 1.8e-06 55.8 52 46.2
BcaB08g35933 Brassica carinata HOM05D007774 ORTHO05D000309 1.8e-06 55.8 67 44.8
BcaC04g20065 Brassica carinata HOM05D008073 ORTHO05D000309 1.8e-06 55.8 57 45.6
BcaNung05585 Brassica carinata HOM05D007774 ORTHO05D000309 1.8e-06 55.8 73 42.5
BolC2t09377H Brassica oleracea HOM05D007774 ORTHO05D000309 1.8e-06 55.8 65 38.5
Lj8P545T2 Lonicera japonica HOM05D008126 ORTHO05D000309 1.8e-06 55.8 58 46.6
AT5G33393 Arabidopsis thaliana HOM05D008073 ORTHO05D081038 2.3e-06 55.5 67 40.3
BcaB01g01302 Brassica carinata HOM05D008073 ORTHO05D000309 2.3e-06 55.5 29 72.4
BraA02t06821Z Brassica rapa HOM05D001038 ORTHO05D000395 2.3e-06 55.5 67 41.8
BcaB06g26683 Brassica carinata HOM05D007774 ORTHO05D000309 3.0e-06 55.1 52 46.2
AT1G67235 Arabidopsis thaliana HOM05D008073 ORTHO05D000309 3.9e-06 54.7 43 48.8
BcaB03g15638 Brassica carinata HOM05D008073 ORTHO05D000309 3.9e-06 54.7 64 42.2
BcaC01g02929 Brassica carinata HOM05D007774 ORTHO05D000309 3.9e-06 54.7 49 49.0
vmacro21229 Vaccinium macrocarpon HOM05D001383 ORTHO05D000309 3.9e-06 54.7 60 46.7
Lj2P78T23 Lonicera japonica HOM05D008126 ORTHO05D000309 5.1e-06 54.3 42 52.4
Lj4E150G0 Lonicera japonica HOM05D008126 ORTHO05D000309 5.1e-06 54.3 42 52.4
Lj5P426T12 Lonicera japonica HOM05D008126 ORTHO05D000309 5.1e-06 54.3 42 52.4
Nitab4.5_0000101g0100 Nicotiana tabacum HOM05D004040 ORTHO05D000309 5.1e-06 54.3 66 42.4
Prupe.7G055500 Prunus persica HOM05D001383 ORTHO05D000309 5.1e-06 54.3 61 44.3
BcaNung03185 Brassica carinata HOM05D007774 ORTHO05D000309 6.7e-06 53.9 70 42.9
Lj4P203T20 Lonicera japonica HOM05D008126 ORTHO05D000309 6.7e-06 53.9 42 52.4
Nitab4.5_0000100g0180 Nicotiana tabacum HOM05D004040 ORTHO05D000309 6.7e-06 53.9 65 41.5
Nitab4.5_0000129g0270 Nicotiana tabacum HOM05D004040 ORTHO05D000309 6.7e-06 53.9 59 40.7
Lj6P58T20 Lonicera japonica HOM05D008126 ORTHO05D000309 8.7e-06 53.5 58 43.1
Nitab4.5_0000008g0480 Nicotiana tabacum HOM05D001883 ORTHO05D002184 8.7e-06 53.5 67 40.3
Nitab4.5_0001931g0130 Nicotiana tabacum HOM05D001883 ORTHO05D002184 8.7e-06 53.5 59 40.7
Prupe.8G093700 Prunus persica HOM05D001383 ORTHO05D000309 8.7e-06 53.5 63 42.9
Solyc03g094173.1 Solanum lycopersicum HOM05D004040 ORTHO05D000309 8.7e-06 53.5 52 44.2


User provided reference genes

Program Settings