Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18114 Brassica carinata HOM05D000141 ORTHO05D039088 7.8e-45 183.3 88 100.0
BcaB02g08765 Brassica carinata HOM05D000141 ORTHO05D000780 1.7e-31 139.0 83 85.5
Thhalv10001292m.g Eutrema salsugineum HOM05D000141 ORTHO05D000780 1.1e-30 136.3 80 85.0
Carub.0004s3024 Capsella rubella HOM05D000141 ORTHO05D000780 4.2e-30 134.4 82 79.3
Sp4g29440 Schrenkiella parvula HOM05D000141 ORTHO05D000780 5.5e-30 134.0 82 80.5
AT2G47500 Arabidopsis thaliana HOM05D000141 ORTHO05D000780 7.1e-30 133.7 82 79.3
BcaC02g12802 Brassica carinata HOM05D000141 ORTHO05D000780 7.1e-30 133.7 81 80.2
C04p00340 Brassica napus HOM05D003197 ORTHO05D003769 7.1e-30 133.7 81 80.2
BolC4t21676H Brassica oleracea HOM05D003197 ORTHO05D003769 7.1e-30 133.7 81 80.2
AL4G47070 Arabidopsis lyrata HOM05D000141 ORTHO05D000780 1.2e-29 132.9 82 79.3
A05p00410 Brassica napus HOM05D003197 ORTHO05D003769 7.9e-29 130.2 83 78.3
BraA05t19039Z Brassica rapa HOM05D000141 ORTHO05D000780 7.9e-29 130.2 83 78.3
C04p00370 Brassica napus HOM05D003197 ORTHO05D000780 1.1e-27 126.3 77 81.8
BolC4t21682H Brassica oleracea HOM05D003197 ORTHO05D000780 1.1e-27 126.3 77 81.8
Aa31LG1G28810 Aethionema arabicum HOM05D000141 ORTHO05D000780 4.2e-22 107.8 86 68.6
CARHR142900 Cardamine hirsuta HOM05D000141 ORTHO05D000780 2.7e-21 105.1 74 71.6
THA.LOC104802188 Tarenaya hassleriana HOM05D000141 ORTHO05D000780 9.7e-11 70.1 84 52.4
Ciclev10018670m.g Citrus clementina HOM05D000141 ORTHO05D000780 3.7e-10 68.2 85 47.1
Phvul.001G210500 Phaseolus vulgaris HOM05D000141 ORTHO05D000780 1.4e-09 66.2 91 45.1
Potri.002G201000 Populus trichocarpa HOM05D000141 ORTHO05D000780 1.8e-09 65.9 85 44.7
VMungo1383G3583 Vigna mungo HOM05D000141 ORTHO05D000780 3.1e-09 65.1 91 45.1
Manes.01G223400 Manihot esculenta HOM05D000141 ORTHO05D000780 6.9e-09 63.9 86 48.8
Cfa005863 Carpinus fangiana HOM05D000141 ORTHO05D000780 3.4e-08 61.6 91 42.9
Thecc.01G306900 Theobroma cacao HOM05D000141 ORTHO05D000780 4.5e-08 61.2 88 43.2
TWI14G1074 Tripterygium wilfordii HOM05D000141 ORTHO05D000780 7.7e-08 60.5 87 44.8
COL.COLO4_23295 Corchorus olitorius HOM05D000141 ORTHO05D000780 1.0e-07 60.1 88 42.0
Potri.014G125700 Populus trichocarpa HOM05D000141 ORTHO05D000780 1.0e-07 60.1 85 41.2
Actinidia33268 Actinidia chinensis HOM05D000141 ORTHO05D000780 1.3e-07 59.7 97 38.1
Haze_04985 Corylus avellana HOM05D000141 ORTHO05D000780 1.7e-07 59.3 91 41.8
Medtr7g109130 Medicago truncatula HOM05D000141 ORTHO05D000780 1.7e-07 59.3 87 42.5
CANSAT80G1363 Cannabis sativa HOM05D000141 ORTHO05D000780 2.2e-07 58.9 96 43.8
QL12p028601 Quercus lobata HOM05D000141 ORTHO05D000780 2.9e-07 58.5 98 38.8
Rhsim13G0007800 Rhododendron simsii HOM05D000141 ORTHO05D000780 2.9e-07 58.5 88 39.8
Duzib138G0041 Durio zibethinus HOM05D000141 ORTHO05D000780 3.8e-07 58.2 88 42.0
Lj2A1200G62 Lonicera japonica HOM05D000141 ORTHO05D000780 3.8e-07 58.2 89 40.4
Duzib133G0990 Durio zibethinus HOM05D000141 ORTHO05D000780 5.0e-07 57.8 88 40.9
Gohir.A07G126500 Gossypium hirsutum HOM05D000141 ORTHO05D000780 8.5e-07 57.0 88 40.9
Gorai.001G141400 Gossypium raimondii HOM05D000141 ORTHO05D000780 8.5e-07 57.0 88 40.9
Glyma.02G015500 Glycine max HOM05D000141 ORTHO05D000780 1.1e-06 56.6 89 40.4
Nitab4.5_0001544g0100 Nicotiana tabacum HOM05D000141 ORTHO05D000780 1.1e-06 56.6 88 38.6
Nitab4.5_0005587g0050 Nicotiana tabacum HOM05D000141 ORTHO05D000780 1.1e-06 56.6 88 38.6
Peaxi162Scf00147g00075 Petunia axillaris HOM05D000141 ORTHO05D000780 1.1e-06 56.6 86 38.4
Prupe.8G265600 Prunus persica HOM05D000141 ORTHO05D000780 1.1e-06 56.6 88 39.8
Hund05456 Selenicereus undatus HOM05D000141 ORTHO05D000780 1.1e-06 56.6 87 39.1
DCAR_002864 Daucus carota HOM05D000141 ORTHO05D000780 1.4e-06 56.2 88 42.0
Actinidia21428 Actinidia chinensis HOM05D000141 ORTHO05D000780 1.9e-06 55.8 92 39.1
Eucgr.H01079 Eucalyptus grandis HOM05D000141 ORTHO05D000780 1.9e-06 55.8 91 39.6
BcaB06g26526 Brassica carinata HOM05D000141 ORTHO05D039088 3.2e-06 55.1 27 88.9
Glyma.10G016000 Glycine max HOM05D000141 ORTHO05D000780 3.2e-06 55.1 89 38.2
Gohir.D07G130600 Gossypium hirsutum HOM05D000141 ORTHO05D000780 3.2e-06 55.1 88 39.8
MD03G1292600 Malus domestica HOM05D000141 ORTHO05D000780 3.2e-06 55.1 91 38.5
Sopen06g004410 Solanum pennellii HOM05D000141 ORTHO05D000780 3.2e-06 55.1 89 36.0
Glyma.19G213600 Glycine max HOM05D000141 ORTHO05D000780 4.2e-06 54.7 91 39.6
RcHm_v2.0_Chr6g0294551 Rosa chinensis HOM05D000141 ORTHO05D000780 4.2e-06 54.7 90 41.1
arahy.Tifrunner.gnm1.ann1.BD3621 Arachis hypogaea HOM05D000141 ORTHO05D000780 5.5e-06 54.3 89 37.1
arahy.Tifrunner.gnm1.ann1.M8MQLJ Arachis hypogaea HOM05D000141 ORTHO05D000780 5.5e-06 54.3 89 37.1
PGSC0003DMG400007291 Solanum tuberosum HOM05D000141 ORTHO05D000780 5.5e-06 54.3 89 36.0
FAN27G1998 Fragaria x ananassa HOM05D000141 ORTHO05D000780 7.2e-06 53.9 90 40.0
AUR62025508 Chenopodium quinoa HOM05D000141 ORTHO05D000780 9.4e-06 53.5 87 37.9
Medtr1g087880 Medicago truncatula HOM05D000141 ORTHO05D000780 9.4e-06 53.5 81 39.5
GSVIVG01028062001 Vitis vinifera HOM05D000141 ORTHO05D000780 9.4e-06 53.5 84 41.7


User provided reference genes

Program Settings