Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18088 Brassica carinata HOM05D006382 ORTHO05D024383 8.4e-38 159.8 80 100.0
BcaC08g45134 Brassica carinata HOM05D006382 ORTHO05D008938 1.3e-14 82.8 43 93.0
A07p25560 Brassica napus HOM05D006382 ORTHO05D008938 1.3e-14 82.8 43 93.0
AT3G61540 Arabidopsis thaliana HOM05D006382 ORTHO05D008938 1.7e-14 82.4 43 93.0
Sp5g01870 Schrenkiella parvula HOM05D006382 ORTHO05D008938 1.7e-14 82.4 43 93.0
Thhalv10005890m.g Eutrema salsugineum HOM05D006382 ORTHO05D008938 2.9e-14 81.6 43 90.7
Aa31LG10G15440 Aethionema arabicum HOM05D006382 ORTHO05D008938 3.8e-14 81.3 43 90.7
C06p27550 Brassica napus HOM05D006382 ORTHO05D008938 3.8e-14 81.3 43 93.0
BolC6t37923H Brassica oleracea HOM05D006382 ORTHO05D008938 3.8e-14 81.3 43 93.0
CARHR171860 Cardamine hirsuta HOM05D006382 ORTHO05D008938 5.0e-14 80.9 43 90.7
BcaB02g07372 Brassica carinata HOM05D006382 ORTHO05D008938 8.5e-14 80.1 43 88.4
COL.COLO4_12779 Corchorus olitorius HOM05D006382 ORTHO05D008938 8.5e-14 80.1 122 45.1
Nitab4.5_0000915g0130 Nicotiana tabacum HOM05D006382 ORTHO05D008938 8.5e-14 80.1 43 90.7
Nitab4.5_0010695g0050 Nicotiana tabacum HOM05D006382 ORTHO05D008938 8.5e-14 80.1 43 90.7
Peaxi162Scf00020g01516 Petunia axillaris HOM05D006382 ORTHO05D008938 1.1e-13 79.7 43 88.4
Rhsim07G0010300 Rhododendron simsii HOM05D006382 ORTHO05D008938 1.1e-13 79.7 43 88.4
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.5e-13 79.3 43 88.4
BraA07t30197Z Brassica rapa HOM05D006382 ORTHO05D008938 1.5e-13 79.3 43 90.7
vmacro13226 Vaccinium macrocarpon HOM05D006382 ORTHO05D008938 1.5e-13 79.3 43 88.4
Aqoxy7G00230 Aquilegia oxysepala HOM05D006382 ORTHO05D008938 1.9e-13 79.0 43 86.0
Migut.B01800 Erythranthe guttata HOM05D006382 ORTHO05D008938 2.5e-13 78.6 89 58.4
RcHm_v2.0_Chr1g0357731 Rosa chinensis HOM05D006382 ORTHO05D008938 2.5e-13 78.6 43 86.0
THA.LOC104827604 Tarenaya hassleriana HOM05D006382 ORTHO05D008938 2.5e-13 78.6 43 86.0
SalBow3G4256 Salvia bowleyana HOM05D006382 ORTHO05D008938 3.2e-13 78.2 43 88.4
AL5G43900 Arabidopsis lyrata HOM05D006382 ORTHO05D008938 4.2e-13 77.8 43 86.0
Carub.0005s2823 Capsella rubella HOM05D006382 ORTHO05D008938 4.2e-13 77.8 43 86.0
Potri.014G090601 Populus trichocarpa HOM05D006382 ORTHO05D008938 5.5e-13 77.4 54 72.2
MD01G1071500 Malus domestica HOM05D006382 ORTHO05D008938 9.4e-13 76.6 43 83.7
Actinidia20164 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.2e-12 76.3 43 86.0
CSS0031254 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 1.2e-12 76.3 43 86.0
Lj9C589T7 Lonicera japonica HOM05D006382 ORTHO05D008938 1.2e-12 76.3 43 86.0
Cpa.g.sc11.72 Carica papaya HOM05D006382 ORTHO05D008938 2.1e-12 75.5 43 83.7
FvH4_7g15410 Fragaria vesca HOM05D006382 ORTHO05D008938 2.1e-12 75.5 43 81.4
FAN01G1899 Fragaria x ananassa HOM05D006382 ORTHO05D008938 2.1e-12 75.5 43 81.4
FAN06G0271 Fragaria x ananassa HOM05D006382 ORTHO05D008938 2.1e-12 75.5 43 81.4
DCAR_005361 Daucus carota HOM05D006382 ORTHO05D008938 2.7e-12 75.1 43 83.7
TWI59G0052 Tripterygium wilfordii HOM05D006382 ORTHO05D008938 2.7e-12 75.1 43 86.0
Dinv43864 Davidia involucrata HOM05D006382 ORTHO05D008938 4.7e-12 74.3 43 83.7
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 4.7e-12 74.3 43 79.1
Oeu063675.1 Olea europaea HOM05D006382 ORTHO05D008938 4.7e-12 74.3 43 83.7
PSO266G0056 Papaver somniferum HOM05D006382 ORTHO05D008938 4.7e-12 74.3 43 81.4
Sabra02G0146800 Salix brachista HOM05D006382 ORTHO05D008938 6.1e-12 73.9 43 81.4
Lalb_Chr19g0126881 Lupinus albus HOM05D006382 ORTHO05D008938 8.0e-12 73.6 43 81.4
PSO384G0256 Papaver somniferum HOM05D006382 ORTHO05D008938 8.0e-12 73.6 43 81.4
SGA_v2.0_scaffold4G02278 Striga asiatica HOM05D006382 ORTHO05D008938 8.0e-12 73.6 43 83.7
MSTRG.17299 Avicennia marina HOM05D006382 ORTHO05D008938 1.0e-11 73.2 43 83.7
CAN.G78.131 Capsicum annuum HOM05D006382 ORTHO05D008938 1.0e-11 73.2 43 88.4
FAN06G2792 Fragaria x ananassa HOM05D006382 ORTHO05D008938 1.0e-11 73.2 43 79.1
HanXRQChr17g0562131 Helianthus annuus HOM05D006382 ORTHO05D008938 1.0e-11 73.2 43 81.4
Solyc01g095120.3 Solanum lycopersicum HOM05D006382 ORTHO05D008938 1.0e-11 73.2 43 88.4
Sopen01g038910 Solanum pennellii HOM05D006382 ORTHO05D008938 1.0e-11 73.2 43 88.4
PGSC0003DMG400000065 Solanum tuberosum HOM05D006382 ORTHO05D008938 1.0e-11 73.2 43 88.4
TPR.G35789 Trifolium pratense HOM05D006382 ORTHO05D008938 1.0e-11 73.2 43 81.4
Potri.002G164700 Populus trichocarpa HOM05D006382 ORTHO05D008938 1.4e-11 72.8 43 81.4
Prupe.2G177700 Prunus persica HOM05D006382 ORTHO05D008938 1.4e-11 72.8 43 81.4
CSS0000318 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 1.8e-11 72.4 43 81.4
CiPaw.01G067600 Carya illinoinensis HOM05D006382 ORTHO05D008938 1.8e-11 72.4 43 81.4
Gohir.D11G097200 Gossypium hirsutum HOM05D006382 ORTHO05D008938 1.8e-11 72.4 43 81.4
Gorai.007G103500 Gossypium raimondii HOM05D006382 ORTHO05D008938 1.8e-11 72.4 43 81.4
VMungo1383G3370 Vigna mungo HOM05D006382 ORTHO05D008938 1.8e-11 72.4 43 81.4
ECA234G1133 Erigeron canadensis HOM05D006382 ORTHO05D008938 2.3e-11 72.0 43 86.0
Gohir.A11G092400 Gossypium hirsutum HOM05D006382 ORTHO05D008938 2.3e-11 72.0 43 81.4
Lsat_1_v5_gn_4_35160 Lactuca sativa HOM05D006382 ORTHO05D008938 2.3e-11 72.0 43 79.1
Phvul.008G058200 Phaseolus vulgaris HOM05D006382 ORTHO05D008938 2.3e-11 72.0 43 81.4
Thecc.01G352300 Theobroma cacao HOM05D006382 ORTHO05D008938 3.0e-11 71.6 43 81.4
TAR629G1903 Trochodendron aralioides HOM05D006382 ORTHO05D008938 3.0e-11 71.6 43 81.4
AUR62004414 Chenopodium quinoa HOM05D006382 ORTHO05D008938 4.0e-11 71.2 43 76.7
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 4.0e-11 71.2 43 79.1
Duzib133G1372 Durio zibethinus HOM05D006382 ORTHO05D008938 4.0e-11 71.2 43 81.4
Lj1g0001840 Lotus japonicus HOM05D006382 ORTHO05D008938 4.0e-11 71.2 43 81.4
Medtr7g079030 Medicago truncatula HOM05D006382 ORTHO05D008938 4.0e-11 71.2 43 79.1
MBI06_g33533_MAGBIO Magnolia biondii HOM05D006382 ORTHO05D008938 5.2e-11 70.9 43 79.1
Atru.BG.55.p Acer truncatum HOM05D006382 ORTHO05D008938 6.7e-11 70.5 43 79.1
Atru.chr5.564 Acer truncatum HOM05D006382 ORTHO05D008938 6.7e-11 70.5 43 79.1
GSVIVG01026968001 Vitis vinifera HOM05D006382 ORTHO05D008938 6.7e-11 70.5 43 81.4
Manes.05G029200 Manihot esculenta HOM05D006382 ORTHO05D008938 8.8e-11 70.1 43 81.4
HPP92_008800 Vanilla planifolia HOM05D006382 ORTHO05D008938 8.8e-11 70.1 43 76.7
Psat3g105480 Pisum sativum HOM05D006382 ORTHO05D008938 1.1e-10 69.7 43 76.7
QL04p055600 Quercus lobata HOM05D006382 ORTHO05D008938 1.1e-10 69.7 43 83.7
CANSAT56G1207 Cannabis sativa HOM05D006382 ORTHO05D008938 1.5e-10 69.3 43 79.1
Glyma.09G254600 Glycine max HOM05D006382 ORTHO05D008938 1.5e-10 69.3 43 76.7
Glyma.18G238400 Glycine max HOM05D006382 ORTHO05D008938 1.5e-10 69.3 43 76.7
Hma1.2p1_0335F.1_g128860 Hydrangea macrophylla HOM05D006382 ORTHO05D008938 2.0e-10 68.9 43 79.1
Cfa003871 Carpinus fangiana HOM05D006382 ORTHO05D008938 2.6e-10 68.6 43 79.1
Haze_15566 Corylus avellana HOM05D006382 ORTHO05D008938 2.6e-10 68.6 43 79.1
Eucgr.D02325 Eucalyptus grandis HOM05D006382 ORTHO05D008938 7.5e-10 67.0 43 76.7
AUR62022620 Chenopodium quinoa HOM05D006382 ORTHO05D008938 9.7e-10 66.6 45 73.3
Nn1g01689 Nelumbo nucifera HOM05D006382 ORTHO05D008938 9.7e-10 66.6 43 76.7
arahy.Tifrunner.gnm1.ann1.FF5BCH Arachis hypogaea HOM05D006382 ORTHO05D008938 1.3e-09 66.2 48 72.9
arahy.Tifrunner.gnm1.ann1.Z348XU Arachis hypogaea HOM05D006382 ORTHO05D008938 1.3e-09 66.2 48 72.9
Pp3c20_22770 Physcomitrium patens HOM05D006382 ORTHO05D008938 1.3e-09 66.2 43 76.7
EL10Ac1g00353 Beta vulgaris HOM05D006382 ORTHO05D008938 1.7e-09 65.9 43 72.1
Ciclev10019743m.g Citrus clementina HOM05D006382 ORTHO05D008938 2.2e-09 65.5 43 76.7
ATR0721G029 Amborella trichopoda HOM05D006382 ORTHO05D008938 2.8e-09 65.1 43 79.1
Ah.05g180140 Amaranthus hybridus HOM05D006382 ORTHO05D008938 4.8e-09 64.3 46 69.6
ClCG05G001220 Citrullus lanatus HOM05D006382 ORTHO05D008938 4.8e-09 64.3 43 76.7
Sed0009049 Sechium edule HOM05D006382 ORTHO05D008938 6.3e-09 63.9 43 76.7
Sc01g0003200 Simmondsia chinensis HOM05D006382 ORTHO05D008938 6.3e-09 63.9 43 74.4
CsaV3_3G008570 Cucumis sativus L. HOM05D006382 ORTHO05D008938 8.2e-09 63.5 43 76.7
unitig_747.g21323 Utricularia gibba HOM05D000887 ORTHO05D000908 1.1e-08 63.2 51 68.6
C04p33670 Brassica napus HOM05D006382 ORTHO05D024383 1.4e-08 62.8 31 96.8
BolC4t24936H Brassica oleracea HOM05D006382 ORTHO05D024383 1.4e-08 62.8 31 96.8
MELO3C006077.2 Cucumis melo HOM05D006382 ORTHO05D008938 1.4e-08 62.8 43 76.7
Oeu063676.1 Olea europaea HOM05D006382 ORTHO05D008938 1.8e-08 62.4 42 78.6
Zm00001eb375690 Zea mays HOM05D006382 ORTHO05D008938 9.1e-08 60.1 43 69.8
CDE10G0280 Ceratophyllum demersum HOM05D006382 ORTHO05D008938 1.6e-07 59.3 43 62.8
Cc02_g38570 Coffea canephora HOM05D006382 ORTHO05D008938 2.0e-07 58.9 43 74.4
SMO134G0292 Selaginella moellendorffii HOM05D006382 ORTHO05D008938 2.7e-07 58.5 43 67.4
CANSAT56G3955 Cannabis sativa HOM05D006382 ORTHO05D008938 4.5e-07 57.8 43 72.1
Cre03.g193700 Chlamydomonas reinhardtii HOM05D006382 ORTHO05D008938 5.9e-07 57.4 43 65.1
Mapoly0179s0013 Marchantia polymorpha HOM05D006382 ORTHO05D008938 2.9e-06 55.1 43 69.8


User provided reference genes

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