Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 9.9e-52 206.5 101 100.0
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 2.5e-34 148.7 75 94.7
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 8.5e-27 123.6 72 81.9
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 5.0e-19 97.8 56 82.1
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 5.0e-19 97.8 56 82.1
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 5.0e-19 97.8 56 82.1
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 5.0e-19 97.8 56 82.1
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 6.5e-19 97.4 56 80.4
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 1.1e-18 96.7 56 82.1
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 1.9e-18 95.9 56 82.1
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 1.2e-17 93.2 56 78.6
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 1.2e-17 93.2 56 78.6
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 1.2e-17 93.2 56 78.6
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 1.2e-17 93.2 56 78.6
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 1.6e-17 92.8 56 78.6
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 1.6e-17 92.8 56 78.6
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 6.1e-17 90.9 56 76.8
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 7.9e-17 90.5 56 76.8
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 2.3e-16 89.0 56 75.0
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 3.9e-16 88.2 56 73.2
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 5.1e-16 87.8 56 75.0
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 6.7e-16 87.4 56 75.0
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 2.6e-15 85.5 60 66.7
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 5.7e-15 84.3 56 69.6
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.7e-14 82.8 56 64.3
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 3.7e-14 81.6 56 66.1
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 3.7e-14 81.6 56 64.3
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.7e-14 81.6 56 62.5
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.7e-14 81.6 56 62.5
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 6.3e-14 80.9 72 48.6
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 1.1e-13 80.1 73 53.4
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 1.4e-13 79.7 56 60.7
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 1.4e-13 79.7 57 63.2
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 1.8e-13 79.3 56 62.5
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 1.8e-13 79.3 56 60.7
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 1.8e-13 79.3 73 52.1
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 1.8e-13 79.3 58 60.3
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 2.4e-13 79.0 56 62.5
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 2.4e-13 79.0 56 58.9
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 2.4e-13 79.0 57 61.4
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.1e-13 78.6 56 62.5
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.1e-13 78.6 56 62.5
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 3.1e-13 78.6 56 62.5
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 3.1e-13 78.6 56 62.5
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 4.1e-13 78.2 56 60.7
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 4.1e-13 78.2 72 50.0
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 4.1e-13 78.2 57 59.6
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 4.1e-13 78.2 56 62.5
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 5.3e-13 77.8 56 62.5
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 5.3e-13 77.8 56 60.7
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 5.3e-13 77.8 56 60.7
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 7.0e-13 77.4 69 56.5
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 9.1e-13 77.0 57 59.6
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 9.1e-13 77.0 56 60.7
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 9.1e-13 77.0 57 59.6
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 9.1e-13 77.0 70 55.7
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 9.1e-13 77.0 68 50.0
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 1.2e-12 76.6 69 53.6
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.2e-12 76.6 62 56.5
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 1.6e-12 76.3 56 62.5
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.6e-12 76.3 57 59.6
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 1.6e-12 76.3 56 62.5
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 1.6e-12 76.3 56 60.7
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 2.0e-12 75.9 56 58.9
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 2.0e-12 75.9 57 56.1
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 2.6e-12 75.5 56 58.9
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 2.6e-12 75.5 56 60.7
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 4.5e-12 74.7 56 58.9
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 4.5e-12 74.7 58 58.6
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 4.5e-12 74.7 56 58.9
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 5.9e-12 74.3 56 53.6
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 5.9e-12 74.3 56 57.1
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 5.9e-12 74.3 56 57.1
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 5.9e-12 74.3 56 58.9
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 5.9e-12 74.3 66 51.5
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 7.7e-12 73.9 60 55.0
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 7.7e-12 73.9 56 53.6
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 1.0e-11 73.6 56 58.9
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 1.3e-11 73.2 65 49.2
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.3e-11 73.2 56 57.1
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.7e-11 72.8 52 61.5
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 2.2e-11 72.4 56 55.4
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 2.2e-11 72.4 56 53.6
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 2.9e-11 72.0 74 47.3
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 2.9e-11 72.0 60 53.3
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 3.8e-11 71.6 60 53.3
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 3.8e-11 71.6 56 57.1
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 3.8e-11 71.6 60 55.0
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 5.0e-11 71.2 56 55.4
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 5.0e-11 71.2 56 53.6
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 6.5e-11 70.9 60 53.3
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 6.5e-11 70.9 56 53.6
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 6.5e-11 70.9 74 45.9
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 6.5e-11 70.9 56 57.1
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 8.5e-11 70.5 74 47.3
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 8.5e-11 70.5 56 55.4
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 8.5e-11 70.5 74 47.3
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 1.9e-10 69.3 56 55.4
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 1.9e-10 69.3 61 52.5
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 2.5e-10 68.9 56 57.1
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 2.5e-10 68.9 56 53.6
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 2.5e-10 68.9 56 55.4
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 2.5e-10 68.9 56 55.4
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 2.5e-10 68.9 58 51.7
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 3.2e-10 68.6 56 51.8
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 3.2e-10 68.6 56 53.6
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 4.2e-10 68.2 56 48.2
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 5.5e-10 67.8 56 53.6
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 7.2e-10 67.4 56 51.8
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 7.2e-10 67.4 56 51.8
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 7.2e-10 67.4 56 53.6
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 7.2e-10 67.4 51 52.9
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 2.1e-09 65.9 55 49.1
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 2.7e-09 65.5 56 46.4
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 6.1e-09 64.3 61 49.2
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 6.1e-09 64.3 61 49.2
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 1.0e-08 63.5 56 46.4
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.0e-08 63.5 60 43.3
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.0e-08 63.5 60 43.3
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 1.4e-08 63.2 59 45.8
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 2.3e-08 62.4 56 44.6
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 3.0e-08 62.0 61 44.3
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 1.1e-07 60.1 57 43.9
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 2.6e-07 58.9 56 44.6
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 3.3e-07 58.5 59 44.1
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 2.8e-06 55.5 59 40.7
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 2.8e-06 55.5 43 60.5
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 2.8e-06 55.5 46 50.0
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 8.2e-06 53.9 59 44.1


User provided reference genes

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