Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18017 Brassica carinata HOM05D000804 ORTHO05D005389 2.8e-123 445.3 219 100.0
BcaC07g37648 Brassica carinata HOM05D000804 ORTHO05D005389 1.6e-115 419.5 239 89.1
BolC8t48020H Brassica oleracea HOM05D000804 ORTHO05D005389 5.2e-114 414.5 241 88.4
BraA08t32948Z Brassica rapa HOM05D000804 ORTHO05D005389 1.9e-95 352.8 239 77.8
A08p09490 Brassica napus HOM05D000804 ORTHO05D005389 9.2e-95 350.5 239 77.8
BcaC07g37646 Brassica carinata HOM05D000804 ORTHO05D005389 4.6e-86 321.6 241 73.0
Sp7g06220 Schrenkiella parvula HOM05D000804 ORTHO05D005389 1.9e-71 273.1 241 63.9
Thhalv10003545m.g Eutrema salsugineum HOM05D000804 ORTHO05D005389 1.3e-61 240.4 247 55.5
Aa31LG9G17950 Aethionema arabicum HOM05D000804 ORTHO05D005389 4.3e-60 235.3 255 54.1
THA.LOC104825451 Tarenaya hassleriana HOM05D000804 ORTHO05D005389 8.5e-56 221.1 251 51.8
AT5G35930 Arabidopsis thaliana HOM05D000804 ORTHO05D005389 4.1e-50 202.2 221 54.3
Carub.0007s3171 Capsella rubella HOM05D000804 ORTHO05D005389 1.5e-49 200.3 225 52.4
Ciclev10030562m.g Citrus clementina HOM05D000804 ORTHO05D005389 4.5e-49 198.7 237 48.1
CARHR216700 Cardamine hirsuta HOM05D000804 ORTHO05D005389 5.5e-47 191.8 220 51.4
Atru.chr2.1715 Acer truncatum HOM05D000804 ORTHO05D005389 1.2e-46 190.7 249 46.2
Duzib128G1116 Durio zibethinus HOM05D000804 ORTHO05D005389 1.6e-46 190.3 261 45.2
AL7G44840 Arabidopsis lyrata HOM05D000804 ORTHO05D005389 7.9e-46 188.0 227 51.5
Dinv43539 Davidia involucrata HOM05D000804 ORTHO05D005389 3.3e-44 182.6 283 41.0
Cfa003676 Carpinus fangiana HOM05D000804 ORTHO05D005389 2.4e-42 176.4 267 40.8
TWI32G1345 Tripterygium wilfordii HOM05D000804 ORTHO05D005389 5.3e-42 175.3 243 41.6
Potri.019G043800 Populus trichocarpa HOM05D000804 ORTHO05D005389 1.2e-41 174.1 252 42.9
Sabra19G0054400 Salix brachista HOM05D000804 ORTHO05D005389 1.2e-41 174.1 252 42.1
ECA248G3066 Erigeron canadensis HOM05D000804 ORTHO05D005389 3.8e-40 169.1 244 40.2
QL04p052206 Quercus lobata HOM05D000804 ORTHO05D005389 6.5e-40 168.3 255 40.4
Haze_15812 Corylus avellana HOM05D000804 ORTHO05D005389 1.1e-39 167.5 266 39.1
TAR375G0260 Trochodendron aralioides HOM05D000804 ORTHO05D005389 1.4e-39 167.2 273 41.4
CiPaw.01G087500 Carya illinoinensis HOM05D000804 ORTHO05D005389 5.5e-39 165.2 244 41.4
GSVIVG01011337001 Vitis vinifera HOM05D000804 ORTHO05D005389 7.2e-39 164.9 256 44.9
Rhsim01G0135000 Rhododendron simsii HOM05D000804 ORTHO05D005389 3.6e-38 162.5 266 39.8
Peaxi162Scf00592g00212 Petunia axillaris HOM05D000804 ORTHO05D005389 2.3e-37 159.8 275 37.8
Lsat_1_v5_gn_1_84561 Lactuca sativa HOM05D000804 ORTHO05D005389 3.9e-37 159.1 242 42.6
TPR.G30883 Trifolium pratense HOM05D000804 ORTHO05D005389 6.7e-37 158.3 274 39.4
CSS0037336 Camellia sinensis var. sinensis HOM05D000804 ORTHO05D005389 2.6e-36 156.4 275 38.2
Ca_23822_v3 Cicer arietinum L. HOM05D000804 ORTHO05D005389 4.4e-36 155.6 276 38.0
Ca_23827_v3 Cicer arietinum L. HOM05D000804 ORTHO05D005389 4.4e-36 155.6 276 38.0
Gohir.A13G075600 Gossypium hirsutum HOM05D000804 ORTHO05D005389 4.4e-36 155.6 264 36.7
Manes.09G131500 Manihot esculenta HOM05D000804 ORTHO05D005389 4.4e-36 155.6 261 40.2
Gohir.D13G099900 Gossypium hirsutum HOM05D000804 ORTHO05D005389 7.4e-36 154.8 264 36.4
Gorai.013G111900 Gossypium raimondii HOM05D000804 ORTHO05D005389 7.4e-36 154.8 264 36.4
Actinidia21598 Actinidia chinensis HOM05D000804 ORTHO05D005389 1.3e-35 154.1 281 37.4
Lj3g0026096 Lotus japonicus HOM05D000804 ORTHO05D005389 1.3e-35 154.1 275 38.5
EL10Ac5g10540 Beta vulgaris HOM05D000804 ORTHO05D005389 1.7e-35 153.7 232 42.2
Eucgr.D01046 Eucalyptus grandis HOM05D000804 ORTHO05D005389 1.7e-35 153.7 272 39.0
Medtr8g035620 Medicago truncatula HOM05D000804 ORTHO05D005389 1.7e-35 153.7 272 37.9
arahy.Tifrunner.gnm1.ann1.WIDJ0V Arachis hypogaea HOM05D000804 ORTHO05D005389 2.8e-35 152.9 230 43.9
SalBow4G2892 Salvia bowleyana HOM05D000804 ORTHO05D005389 2.8e-35 152.9 260 37.7
MELO3C020372.2 Cucumis melo HOM05D000804 ORTHO05D005389 3.7e-35 152.5 262 37.4
HanXRQChr01g0020521 Helianthus annuus HOM05D000804 ORTHO05D005389 3.7e-35 152.5 231 41.1
PGR083G1621 Punica granatum HOM05D000804 ORTHO05D005389 1.4e-34 150.6 275 37.5
VMungo0331G0574 Vigna mungo HOM05D000804 ORTHO05D005389 1.4e-34 150.6 276 37.3
Psat4g196240 Pisum sativum HOM05D000804 ORTHO05D005389 1.8e-34 150.2 272 37.1
Cc02_g26260 Coffea canephora HOM05D000804 ORTHO05D005389 4.1e-34 149.1 253 37.9
AUR62028598 Chenopodium quinoa HOM05D000804 ORTHO05D005389 9.1e-34 147.9 233 40.8
arahy.Tifrunner.gnm1.ann1.00QVML Arachis hypogaea HOM05D000804 ORTHO05D005389 1.6e-33 147.1 282 37.6
Sed0024810 Sechium edule HOM05D000804 ORTHO05D005389 1.6e-33 147.1 265 37.4
ClCG06G008140 Citrullus lanatus HOM05D000804 ORTHO05D005389 2.0e-33 146.7 258 36.4
Migut.N01690 Erythranthe guttata HOM05D000804 ORTHO05D005389 2.0e-33 146.7 268 38.4
Glyma.03G021000 Glycine max HOM05D000804 ORTHO05D005389 4.5e-33 145.6 277 35.7
arahy.Tifrunner.gnm1.ann1.A8SNFY Arachis hypogaea HOM05D000804 ORTHO05D005389 1.7e-32 143.7 291 36.1
Lalb_Chr07g0189561 Lupinus albus HOM05D000804 ORTHO05D005389 1.7e-32 143.7 275 37.5
CsaV3_2G011020 Cucumis sativus L. HOM05D000804 ORTHO05D005389 2.2e-32 143.3 259 35.5
Nn1g09657 Nelumbo nucifera HOM05D000804 ORTHO05D005389 5.0e-32 142.1 277 35.7
Migut.O00426 Erythranthe guttata HOM05D000804 ORTHO05D005389 1.1e-31 141.0 266 39.1
CAN.G700.21 Capsicum annuum HOM05D000804 ORTHO05D005389 4.2e-31 139.0 283 34.6
Nitab4.5_0003594g0030 Nicotiana tabacum HOM05D000804 ORTHO05D005389 4.2e-31 139.0 281 35.2
Solyc01g081050.4 Solanum lycopersicum HOM05D000804 ORTHO05D005389 5.5e-31 138.7 277 34.3
Oeu024961.1 Olea europaea HOM05D000804 ORTHO05D005389 7.2e-31 138.3 277 33.2
Aqoxy3G02136 Aquilegia oxysepala HOM05D000804 ORTHO05D005389 1.2e-30 137.5 241 35.7
PSO063G5197 Papaver somniferum HOM05D000804 ORTHO05D005389 1.6e-30 137.1 274 35.0
Cpa.g.sc73.84 Carica papaya HOM05D000804 ORTHO05D005389 5.2e-29 132.1 109 59.6
FAN06G2879 Fragaria x ananassa HOM05D000804 ORTHO05D005389 8.8e-29 131.3 222 38.7
FAN10G1244 Fragaria x ananassa HOM05D000804 ORTHO05D005389 8.8e-29 131.3 222 38.7
Hma1.2p1_0684F.1_g202990 Hydrangea macrophylla HOM05D000804 ORTHO05D005389 4.4e-28 129.0 109 58.7
Sc17g0001320 Simmondsia chinensis HOM05D000804 ORTHO05D005389 4.4e-28 129.0 232 39.7
MSTRG.4983 Avicennia marina HOM05D000804 ORTHO05D005389 1.7e-27 127.1 266 33.8
MD07G1077300 Malus domestica HOM05D000804 ORTHO05D005389 1.7e-27 127.1 236 37.7
SGA_v2.0_scaffold4G02207 Striga asiatica HOM05D000804 ORTHO05D005389 8.2e-27 124.8 286 31.8
HPP92_005377 Vanilla planifolia HOM05D000804 ORTHO05D005389 1.1e-26 124.4 267 34.8
unitig_22.g5901 Utricularia gibba HOM05D000804 ORTHO05D005389 2.4e-26 123.2 250 35.6
Phvul.010G085900 Phaseolus vulgaris HOM05D000804 ORTHO05D005389 3.1e-26 122.9 109 55.0
HPP92_005437 Vanilla planifolia HOM05D000804 ORTHO05D005389 3.1e-26 122.9 271 34.7
vmacro21110 Vaccinium macrocarpon HOM05D000804 ORTHO05D005389 4.1e-26 122.5 391 28.4
FAN01G2963 Fragaria x ananassa HOM05D000804 ORTHO05D005389 9.1e-26 121.3 224 36.6
Ah.02g110870 Amaranthus hybridus HOM05D000804 ORTHO05D005389 1.2e-25 120.9 226 36.7
Lj7C558T5 Lonicera japonica HOM05D000804 ORTHO05D005389 1.6e-25 120.6 109 57.8
Prupe.2G098200 Prunus persica HOM05D000804 ORTHO05D005389 2.0e-25 120.2 230 38.7
RcHm_v2.0_Chr1g0337111 Rosa chinensis HOM05D000804 ORTHO05D005389 3.5e-25 119.4 220 38.2
HPP92_005379 Vanilla planifolia HOM05D000804 ORTHO05D005389 5.9e-25 118.6 268 34.3
Nitab4.5_0000592g0230 Nicotiana tabacum HOM05D000804 ORTHO05D005389 8.5e-24 114.8 109 51.4
DCAR_029554 Daucus carota HOM05D000804 ORTHO05D005389 3.6e-22 109.4 272 29.0
CDE12G0088 Ceratophyllum demersum HOM05D000804 ORTHO05D005389 1.0e-21 107.8 297 28.6
Zm00001eb378990 Zea mays HOM05D000804 ORTHO05D005389 1.2e-20 104.4 230 34.3
ATR0829G026 Amborella trichopoda HOM05D000804 ORTHO05D005389 2.0e-20 103.6 295 30.2
AUR62017553 Chenopodium quinoa HOM05D000804 ORTHO05D005389 9.8e-20 101.3 108 50.9
RcHm_v2.0_Chr2g0102891 Rosa chinensis HOM05D000804 ORTHO05D005389 1.7e-16 90.5 112 44.6
SEGI_25496 Sequoiadendron giganteum HOM05D000804 ORTHO05D005389 2.2e-16 90.1 110 40.0
Os06g0111600 Oryza sativa ssp. japonica HOM05D000804 ORTHO05D005389 3.8e-16 89.4 111 42.3
Cpa.g.sc73.83 Carica papaya HOM05D000804 ORTHO05D005389 1.6e-09 67.4 81 45.7
SMO145G0113 Selaginella moellendorffii HOM05D000804 ORTHO05D005389 5.9e-09 65.5 116 32.8
RcHm_v2.0_Chr1g0337141 Rosa chinensis HOM05D000804 ORTHO05D005389 1.9e-07 60.5 30 80.0
AagrBONN_evm.TU.Sc2ySwM_117.1272 Anthoceros agrestis HOM05D000804 ORTHO05D005389 5.6e-07 58.9 113 35.4
Nitab4.5_0000592g0240 Nicotiana tabacum HOM05D000804 ORTHO05D005389 1.2e-06 57.8 110 35.5


User provided reference genes

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