Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 1.2e-38 162.5 76 100.0
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 5.4e-26 120.6 57 96.5
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 1.2e-25 119.4 57 96.5
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 1.2e-25 119.4 57 96.5
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 3.5e-25 117.9 57 93.0
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 4.6e-25 117.5 57 93.0
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 7.8e-25 116.7 57 93.0
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 7.8e-25 116.7 57 93.0
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 7.8e-25 116.7 57 93.0
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 7.8e-25 116.7 57 93.0
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 1.0e-24 116.3 57 93.0
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 1.0e-24 116.3 57 91.2
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 1.7e-24 115.5 57 89.5
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 1.7e-24 115.5 57 89.5
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 1.1e-23 112.8 57 87.7
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 1.9e-23 112.1 57 86.0
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 2.5e-23 111.7 57 84.2
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 4.3e-23 110.9 57 84.2
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 4.3e-23 110.9 57 84.2
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 4.3e-23 110.9 57 84.2
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 1.4e-21 105.9 57 77.2
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 1.8e-21 105.5 57 75.4
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 1.3e-19 99.4 58 72.4
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 6.4e-19 97.1 57 70.2
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 6.4e-19 97.1 57 70.2
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 1.4e-18 95.9 58 70.7
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 1.4e-18 95.9 57 70.2
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 2.4e-18 95.1 57 70.2
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 5.4e-18 94.0 57 64.9
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 5.4e-18 94.0 57 66.7
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 9.2e-18 93.2 57 66.7
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 1.2e-17 92.8 57 68.4
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 1.2e-17 92.8 57 68.4
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 1.2e-17 92.8 57 64.9
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 1.2e-17 92.8 57 68.4
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 1.6e-17 92.4 57 68.4
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 1.6e-17 92.4 57 68.4
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 1.6e-17 92.4 57 68.4
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 1.6e-17 92.4 57 66.7
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 2.1e-17 92.0 57 70.2
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 2.1e-17 92.0 57 66.7
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 2.1e-17 92.0 57 66.7
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 2.7e-17 91.7 57 63.2
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 2.7e-17 91.7 57 66.7
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 2.7e-17 91.7 57 66.7
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 3.5e-17 91.3 57 64.9
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 4.6e-17 90.9 57 61.4
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 6.0e-17 90.5 57 61.4
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 6.0e-17 90.5 57 66.7
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 6.0e-17 90.5 57 64.9
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 7.8e-17 90.1 57 66.7
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 7.8e-17 90.1 57 64.9
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 7.8e-17 90.1 57 61.4
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 7.8e-17 90.1 57 61.4
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 7.8e-17 90.1 57 61.4
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 7.8e-17 90.1 57 64.9
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 1.0e-16 89.7 58 65.5
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 1.0e-16 89.7 56 64.3
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 1.0e-16 89.7 57 63.2
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 1.3e-16 89.4 57 63.2
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 1.3e-16 89.4 55 67.3
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 1.3e-16 89.4 57 64.9
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 1.3e-16 89.4 56 66.1
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.7e-16 89.0 57 64.9
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 2.3e-16 88.6 57 63.2
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 3.0e-16 88.2 58 63.8
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 3.0e-16 88.2 57 63.2
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 3.9e-16 87.8 57 61.4
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 3.9e-16 87.8 57 63.2
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 3.9e-16 87.8 57 61.4
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 3.9e-16 87.8 57 64.9
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 5.1e-16 87.4 57 63.2
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 5.1e-16 87.4 57 61.4
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 6.6e-16 87.0 57 61.4
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 6.6e-16 87.0 57 63.2
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 6.6e-16 87.0 57 59.6
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 6.6e-16 87.0 57 59.6
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 8.6e-16 86.7 57 61.4
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 8.6e-16 86.7 57 59.6
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 8.6e-16 86.7 57 59.6
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 8.6e-16 86.7 56 60.7
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 8.6e-16 86.7 57 59.6
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 8.6e-16 86.7 57 59.6
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 8.6e-16 86.7 57 59.6
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 8.6e-16 86.7 57 59.6
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 8.6e-16 86.7 57 54.4
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 1.1e-15 86.3 57 59.6
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 1.1e-15 86.3 57 63.2
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 1.5e-15 85.9 57 59.6
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 1.9e-15 85.5 57 63.2
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 1.9e-15 85.5 57 61.4
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 1.9e-15 85.5 57 57.9
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 2.5e-15 85.1 57 64.9
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 2.5e-15 85.1 57 63.2
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 2.5e-15 85.1 57 61.4
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 4.3e-15 84.3 57 52.6
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 5.6e-15 84.0 57 61.4
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 5.6e-15 84.0 60 53.3
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 7.3e-15 83.6 57 57.9
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 1.6e-14 82.4 58 55.2
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 2.8e-14 81.6 57 56.1
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 4.7e-14 80.9 58 58.6
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 1.4e-13 79.3 55 54.5
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 3.1e-13 78.2 56 57.1
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 3.1e-13 78.2 56 57.1
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 5.2e-13 77.4 56 55.4
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 5.2e-13 77.4 56 55.4
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 8.9e-13 76.6 57 50.9
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 1.3e-11 72.8 55 50.9
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 2.2e-11 72.0 50 56.0
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 8.4e-11 70.1 52 51.9
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 1.4e-10 69.3 61 52.5
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 1.6e-09 65.9 60 50.0
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 1.0e-08 63.2 60 46.7
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 8.7e-08 60.1 28 89.3
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.2e-06 56.2 28 82.1
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 2.8e-06 55.1 28 75.0
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 3.6e-06 54.7 27 77.8
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 4.7e-06 54.3 28 75.0
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 8.1e-06 53.5 64 32.8


User provided reference genes

Program Settings