Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17879 Brassica carinata HOM05D004393 ORTHO05D004897 1.3e-48 196.1 96 100.0
Sp1g29580 Schrenkiella parvula HOM05D004393 ORTHO05D004897 9.5e-36 153.3 87 85.1
BcaB07g33130 Brassica carinata HOM05D004393 ORTHO05D004897 2.8e-35 151.8 87 86.2
BcaC07g37547 Brassica carinata HOM05D004393 ORTHO05D004897 6.1e-35 150.6 87 87.4
A08p08270 Brassica napus HOM05D004393 ORTHO05D004897 2.3e-34 148.7 87 86.2
BraA08t32845Z Brassica rapa HOM05D004393 ORTHO05D004897 2.3e-34 148.7 87 86.2
AL1G48910 Arabidopsis lyrata HOM05D004393 ORTHO05D004897 6.8e-34 147.1 88 81.8
AT1G34355 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 6.8e-34 147.1 88 81.8
Thhalv10006568m.g Eutrema salsugineum HOM05D004393 ORTHO05D004897 8.9e-34 146.7 88 81.8
Carub.0001s3249 Capsella rubella HOM05D004393 ORTHO05D004897 1.5e-33 146.0 88 80.7
Aa31LG6G8430 Aethionema arabicum HOM05D004393 ORTHO05D004897 3.7e-32 141.4 87 77.0
BcaC08g43782 Brassica carinata HOM05D004393 ORTHO05D004897 1.3e-29 132.9 87 79.3
BolC6t36294H Brassica oleracea HOM05D004393 ORTHO05D004897 1.3e-29 132.9 87 79.3
C06p11600 Brassica napus HOM05D004393 ORTHO05D004897 1.1e-28 129.8 87 77.0
THA.LOC104813097 Tarenaya hassleriana HOM05D004393 ORTHO05D004897 9.5e-28 126.7 87 71.3
BraA09t38751Z Brassica rapa HOM05D004393 ORTHO05D004897 8.0e-27 123.6 87 73.6
BcaC04g20233 Brassica carinata HOM05D004393 ORTHO05D004897 2.3e-26 122.1 89 74.2
A10p12670 Brassica napus HOM05D004393 ORTHO05D004897 2.3e-26 122.1 89 74.2
C09p46070 Brassica napus HOM05D004393 ORTHO05D004897 2.3e-26 122.1 89 74.2
BolC9t57476H Brassica oleracea HOM05D004393 ORTHO05D004897 4.0e-26 121.3 89 73.0
BraA10t43355Z Brassica rapa HOM05D004393 ORTHO05D004897 8.9e-26 120.2 89 73.0
A09p32120 Brassica napus HOM05D004393 ORTHO05D004897 1.7e-24 115.9 87 70.1
Manes.18G099700 Manihot esculenta HOM05D004393 ORTHO05D004897 1.6e-22 109.4 92 59.8
Sabra13G0097000 Salix brachista HOM05D004393 ORTHO05D004897 8.6e-21 103.6 90 57.8
RcHm_v2.0_Chr6g0272171 Rosa chinensis HOM05D004393 ORTHO05D004897 4.3e-20 101.3 83 61.4
Potri.013G114700 Populus trichocarpa HOM05D004393 ORTHO05D004897 9.5e-20 100.1 87 57.5
Duzib116G0396 Durio zibethinus HOM05D004393 ORTHO05D004897 2.8e-19 98.6 87 56.3
COL.COLO4_29964 Corchorus olitorius HOM05D004393 ORTHO05D004897 3.6e-19 98.2 87 57.5
SalBow7G1128 Salvia bowleyana HOM05D004393 ORTHO05D004897 6.2e-19 97.4 87 55.2
Cpa.g.sc66.57 Carica papaya HOM05D004393 ORTHO05D004897 8.1e-19 97.1 97 53.6
BcaB06g26599 Brassica carinata HOM05D004393 ORTHO05D004897 1.1e-18 96.7 87 64.4
Prupe.8G054200 Prunus persica HOM05D004393 ORTHO05D004897 1.1e-18 96.7 83 60.2
arahy.Tifrunner.gnm1.ann1.1646XJ Arachis hypogaea HOM05D004393 ORTHO05D004897 1.4e-18 96.3 83 57.8
arahy.Tifrunner.gnm1.ann1.Y0NS3Z Arachis hypogaea HOM05D004393 ORTHO05D004897 1.4e-18 96.3 83 57.8
Thecc.08G202200 Theobroma cacao HOM05D004393 ORTHO05D004897 1.4e-18 96.3 87 56.3
TWI60G1027 Tripterygium wilfordii HOM05D004393 ORTHO05D004897 1.4e-18 96.3 93 57.0
Ciclev10000264m.g Citrus clementina HOM05D004393 ORTHO05D004897 4.0e-18 94.7 87 55.2
GSVIVG01034506001 Vitis vinifera HOM05D004393 ORTHO05D004897 4.0e-18 94.7 89 58.4
BolC7t41736H Brassica oleracea HOM05D004393 ORTHO05D004897 6.8e-18 94.0 87 62.1
Atru.chr13.1813 Acer truncatum HOM05D004393 ORTHO05D004897 8.9e-18 93.6 90 58.9
Nn5g27793 Nelumbo nucifera HOM05D004393 ORTHO05D004897 8.9e-18 93.6 93 53.8
BcaC06g35663 Brassica carinata HOM05D004393 ORTHO05D004897 1.2e-17 93.2 87 62.1
A07p08200 Brassica napus HOM05D004393 ORTHO05D004897 1.2e-17 93.2 87 62.1
C07p12350 Brassica napus HOM05D004393 ORTHO05D004897 1.2e-17 93.2 87 62.1
BraA07t28604Z Brassica rapa HOM05D004393 ORTHO05D004897 1.2e-17 93.2 87 62.1
CAN.G61.21 Capsicum annuum HOM05D004393 ORTHO05D004897 1.2e-17 93.2 88 59.1
SGA_v2.0_scaffold24G10548 Striga asiatica HOM05D004393 ORTHO05D004897 1.2e-17 93.2 91 53.8
Nitab4.5_0000159g0160 Nicotiana tabacum HOM05D004393 ORTHO05D004897 1.5e-17 92.8 87 55.2
MELO3C023669.2 Cucumis melo HOM05D004393 ORTHO05D004897 2.0e-17 92.4 83 55.4
Gorai.006G131600 Gossypium raimondii HOM05D004393 ORTHO05D004897 2.0e-17 92.4 84 57.1
Lalb_Chr03g0035861 Lupinus albus HOM05D004393 ORTHO05D004897 2.0e-17 92.4 83 56.6
Phvul.004G084400 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 2.0e-17 92.4 83 59.0
ClCG09G010400 Citrullus lanatus HOM05D004393 ORTHO05D004897 2.6e-17 92.0 83 57.8
Dinv01093 Davidia involucrata HOM05D004393 ORTHO05D004897 2.6e-17 92.0 91 53.8
MD05G1040500 Malus domestica HOM05D004393 ORTHO05D004897 2.6e-17 92.0 85 58.8
CANSAT25G3510 Cannabis sativa HOM05D004393 ORTHO05D004897 3.4e-17 91.7 83 57.8
CsaV3_7G024210 Cucumis sativus L. HOM05D004393 ORTHO05D004897 3.4e-17 91.7 83 55.4
MD10G1046600 Malus domestica HOM05D004393 ORTHO05D004897 3.4e-17 91.7 85 58.8
Sed0026578 Sechium edule HOM05D004393 ORTHO05D004897 3.4e-17 91.7 83 55.4
Haze_17905 Corylus avellana HOM05D004393 ORTHO05D004897 4.4e-17 91.3 85 56.5
Nitab4.5_0009001g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 4.4e-17 91.3 89 56.2
Solyc11g017130.2 Solanum lycopersicum HOM05D004393 ORTHO05D004897 4.4e-17 91.3 87 56.3
Sopen11g009080 Solanum pennellii HOM05D004393 ORTHO05D004897 4.4e-17 91.3 87 56.3
Lj2g0019211 Lotus japonicus HOM05D004393 ORTHO05D004897 5.8e-17 90.9 84 58.3
PGSC0003DMG401026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 5.8e-17 90.9 87 54.0
CSS0013393 Camellia sinensis var. sinensis HOM05D004393 ORTHO05D004897 7.6e-17 90.5 93 53.8
Migut.C01240 Erythranthe guttata HOM05D004393 ORTHO05D004897 7.6e-17 90.5 93 51.6
Gohir.A09G117000 Gossypium hirsutum HOM05D004393 ORTHO05D004897 7.6e-17 90.5 83 54.2
Gohir.D09G113900 Gossypium hirsutum HOM05D004393 ORTHO05D004897 7.6e-17 90.5 83 54.2
SGA_v2.0_scaffold118G32462 Striga asiatica HOM05D004393 ORTHO05D004897 7.6e-17 90.5 88 54.5
Solyc06g065450.3 Solanum lycopersicum HOM05D004393 ORTHO05D004897 9.9e-17 90.1 87 54.0
Sopen06g023940 Solanum pennellii HOM05D004393 ORTHO05D004897 9.9e-17 90.1 87 54.0
FvH4_2g12232 Fragaria vesca HOM05D004393 ORTHO05D004897 1.3e-16 89.7 83 55.4
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.3e-16 89.7 83 55.4
FAN27G3511 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.3e-16 89.7 83 56.6
PGR042G3903 Punica granatum HOM05D004393 ORTHO05D004897 1.3e-16 89.7 83 56.6
VMungo0464G1718 Vigna mungo HOM05D004393 ORTHO05D004897 1.3e-16 89.7 83 56.6
TAR381G1591 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.7e-16 89.4 92 53.3
MSTRG.25436 Avicennia marina HOM05D004393 ORTHO05D004897 2.2e-16 89.0 91 51.6
Peaxi162Scf00268g01216 Petunia axillaris HOM05D004393 ORTHO05D004897 2.2e-16 89.0 87 54.0
TAR624G0562 Trochodendron aralioides HOM05D004393 ORTHO05D004897 2.2e-16 89.0 92 52.2
AUR62004661 Chenopodium quinoa HOM05D004393 ORTHO05D004897 2.9e-16 88.6 87 50.6
Glyma.02G074500 Glycine max HOM05D004393 ORTHO05D004897 3.7e-16 88.2 83 55.4
Nitab4.5_0004461g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 3.7e-16 88.2 91 51.6
CiPaw.16G062700 Carya illinoinensis HOM05D004393 ORTHO05D004897 8.3e-16 87.0 87 51.7
FAN20G0457 Fragaria x ananassa HOM05D004393 ORTHO05D004897 8.3e-16 87.0 83 54.2
Lsat_1_v5_gn_4_119261 Lactuca sativa HOM05D004393 ORTHO05D004897 8.3e-16 87.0 88 52.3
Lalb_Chr01g0009981 Lupinus albus HOM05D004393 ORTHO05D004897 1.4e-15 86.3 83 53.0
Aqoxy6G00122 Aquilegia oxysepala HOM05D004393 ORTHO05D004897 1.9e-15 85.9 98 48.0
AUR62023578 Chenopodium quinoa HOM05D004393 ORTHO05D004897 1.9e-15 85.9 86 52.3
MBI16_g07683_MAGBIO Magnolia biondii HOM05D004393 ORTHO05D004897 1.9e-15 85.9 89 52.8
Sc01g0001720 Simmondsia chinensis HOM05D004393 ORTHO05D004897 1.9e-15 85.9 89 50.6
Glyma.16G156500 Glycine max HOM05D004393 ORTHO05D004897 2.4e-15 85.5 83 53.0
QL02p034089 Quercus lobata HOM05D004393 ORTHO05D004897 2.4e-15 85.5 83 56.6
Ah.05g177790 Amaranthus hybridus HOM05D004393 ORTHO05D004897 4.1e-15 84.7 86 47.7
ECA232G2172 Erigeron canadensis HOM05D004393 ORTHO05D004897 4.1e-15 84.7 87 50.6
SHI09053 Sapria himalayana HOM05D004393 ORTHO05D004897 5.4e-15 84.3 113 42.5
Nitab4.5_0000303g0030 Nicotiana tabacum HOM05D004393 ORTHO05D004897 9.2e-15 83.6 91 48.4
CAN.G199.23 Capsicum annuum HOM05D004393 ORTHO05D004897 1.6e-14 82.8 87 50.6
Peaxi162Scf00495g00119 Petunia axillaris HOM05D004393 ORTHO05D004897 2.1e-14 82.4 87 49.4
Glyma.10G215100 Glycine max HOM05D004393 ORTHO05D004897 2.7e-14 82.0 83 49.4
PSO170G6764 Papaver somniferum HOM05D004393 ORTHO05D004897 2.7e-14 82.0 87 51.7
Cc00_g08770 Coffea canephora HOM05D004393 ORTHO05D004897 6.0e-14 80.9 98 45.9
Oeu021008.1 Olea europaea HOM05D004393 ORTHO05D004897 6.0e-14 80.9 87 51.7
Hund27078 Selenicereus undatus HOM05D004393 ORTHO05D004897 6.0e-14 80.9 93 45.2
Actinidia23321 Actinidia chinensis HOM05D004393 ORTHO05D004897 1.0e-13 80.1 95 49.5
HanXRQChr09g0268931 Helianthus annuus HOM05D004393 ORTHO05D004897 1.7e-13 79.3 83 51.8
Oeu039591.2 Olea europaea HOM05D004393 ORTHO05D004897 1.7e-13 79.3 89 49.4
ATR0584G230 Amborella trichopoda HOM05D004393 ORTHO05D004897 6.6e-13 77.4 88 48.9
vmacro12498 Vaccinium macrocarpon HOM05D004393 ORTHO05D004897 6.6e-13 77.4 82 50.0
VMungo0720G0020 Vigna mungo HOM05D004393 ORTHO05D004897 6.6e-13 77.4 83 47.0
BolC8t47860H Brassica oleracea HOM05D004393 ORTHO05D004897 1.1e-12 76.6 36 97.2
PSO782G0828 Papaver somniferum HOM05D004393 ORTHO05D004897 1.1e-12 76.6 87 47.1
Ca_10603_v3 Cicer arietinum L. HOM05D004393 ORTHO05D004897 1.5e-12 76.3 83 47.0
AT2G34110 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 2.5e-12 75.5 63 63.5
Lj5g0027195 Lotus japonicus HOM05D004393 ORTHO05D004897 2.5e-12 75.5 83 48.2
Rhsim06G0097300 Rhododendron simsii HOM05D004393 ORTHO05D004897 2.5e-12 75.5 103 44.7
TPR.G1817 Trifolium pratense HOM05D004393 ORTHO05D004897 3.3e-12 75.1 83 47.0
Phvul.007G090600 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 2.8e-11 72.0 83 44.6
Psat6g185840 Pisum sativum HOM05D004393 ORTHO05D004897 3.6e-11 71.6 87 44.8
SEGI_03768 Sequoiadendron giganteum HOM05D004393 ORTHO05D004897 8.1e-11 70.5 83 45.8
HPP92_019371 Vanilla planifolia HOM05D004393 ORTHO05D004897 1.4e-10 69.7 89 40.4
Sabra07G0062600 Salix brachista HOM05D004393 ORTHO05D004897 4.4e-09 64.7 63 50.8
Os11g0171700 Oryza sativa ssp. japonica HOM05D004393 ORTHO05D004897 1.3e-08 63.2 79 39.2
Medtr1g096000 Medicago truncatula HOM05D004393 ORTHO05D004897 1.4e-07 59.7 44 59.1
Zm00001eb091700 Zea mays HOM05D004393 ORTHO05D004897 1.9e-07 59.3 79 38.0


User provided reference genes

Program Settings