Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17878 Brassica carinata HOM05D004393 ORTHO05D004897 7.3e-184 647.1 333 100.0
BcaC07g37547 Brassica carinata HOM05D004393 ORTHO05D004897 6.6e-145 517.7 351 80.3
BolC8t47860H Brassica oleracea HOM05D004393 ORTHO05D004897 2.5e-144 515.8 351 80.1
BraA08t32845Z Brassica rapa HOM05D004393 ORTHO05D004897 4.3e-136 488.4 318 82.7
A08p08270 Brassica napus HOM05D004393 ORTHO05D004897 3.5e-130 468.8 318 79.9
Sp1g29580 Schrenkiella parvula HOM05D004393 ORTHO05D004897 2.3e-113 412.9 369 66.1
BcaB07g33130 Brassica carinata HOM05D004393 ORTHO05D004897 8.2e-111 404.4 355 68.5
BcaC08g43782 Brassica carinata HOM05D004393 ORTHO05D004897 6.9e-110 401.4 375 64.3
BolC6t36294H Brassica oleracea HOM05D004393 ORTHO05D004897 6.9e-110 401.4 375 64.3
C06p11600 Brassica napus HOM05D004393 ORTHO05D004897 3.4e-109 399.1 375 63.7
BraA09t38751Z Brassica rapa HOM05D004393 ORTHO05D004897 2.2e-108 396.4 375 63.7
Thhalv10006568m.g Eutrema salsugineum HOM05D004393 ORTHO05D004897 1.7e-103 380.2 377 63.7
AL1G48910 Arabidopsis lyrata HOM05D004393 ORTHO05D004897 1.8e-102 376.7 361 64.0
AT1G34355 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 1.0e-100 370.9 371 62.0
CARHR033810 Cardamine hirsuta HOM05D004393 ORTHO05D004897 5.0e-100 368.6 371 62.5
A10p12670 Brassica napus HOM05D004393 ORTHO05D004897 3.9e-97 359.0 370 61.6
BcaC04g20233 Brassica carinata HOM05D004393 ORTHO05D004897 1.5e-96 357.1 373 60.9
BraA10t43355Z Brassica rapa HOM05D004393 ORTHO05D004897 1.5e-96 357.1 370 61.4
C09p46070 Brassica napus HOM05D004393 ORTHO05D004897 3.3e-96 355.9 373 61.1
BolC9t57476H Brassica oleracea HOM05D004393 ORTHO05D004897 3.3e-96 355.9 373 61.1
Carub.0001s3249 Capsella rubella HOM05D004393 ORTHO05D004897 9.4e-91 337.8 368 57.1
A07p08200 Brassica napus HOM05D004393 ORTHO05D004897 1.9e-83 313.5 279 65.9
BraA07t28604Z Brassica rapa HOM05D004393 ORTHO05D004897 1.9e-83 313.5 279 65.9
A09p32120 Brassica napus HOM05D004393 ORTHO05D004897 8.0e-82 308.1 372 56.2
C07p12350 Brassica napus HOM05D004393 ORTHO05D004897 8.0e-82 308.1 308 61.4
BcaB06g26599 Brassica carinata HOM05D004393 ORTHO05D004897 1.4e-81 307.4 270 67.4
BcaC06g35663 Brassica carinata HOM05D004393 ORTHO05D004897 1.5e-80 303.9 244 71.3
Aa31LG6G8430 Aethionema arabicum HOM05D004393 ORTHO05D004897 3.7e-79 299.3 368 54.3
THA.LOC104813097 Tarenaya hassleriana HOM05D004393 ORTHO05D004897 5.8e-64 248.8 313 48.6
BolC7t41736H Brassica oleracea HOM05D004393 ORTHO05D004897 2.5e-59 233.4 216 65.7
Ciclev10000264m.g Citrus clementina HOM05D004393 ORTHO05D004897 3.2e-54 216.5 290 48.6
Manes.18G099700 Manihot esculenta HOM05D004393 ORTHO05D004897 2.7e-53 213.4 345 42.9
Cfa018204 Carpinus fangiana HOM05D004393 ORTHO05D004897 3.0e-52 209.9 257 50.2
CiPaw.16G062700 Carya illinoinensis HOM05D004393 ORTHO05D004897 3.0e-52 209.9 317 43.8
Haze_17905 Corylus avellana HOM05D004393 ORTHO05D004897 3.3e-51 206.5 266 48.9
Prupe.8G054200 Prunus persica HOM05D004393 ORTHO05D004897 5.6e-51 205.7 322 44.1
MD05G1040500 Malus domestica HOM05D004393 ORTHO05D004897 1.2e-50 204.5 325 43.4
Thecc.08G202200 Theobroma cacao HOM05D004393 ORTHO05D004897 1.2e-50 204.5 316 44.9
Atru.chr13.1813 Acer truncatum HOM05D004393 ORTHO05D004897 2.1e-50 203.8 328 45.1
Duzib116G0396 Durio zibethinus HOM05D004393 ORTHO05D004897 2.1e-50 203.8 316 44.0
Nitab4.5_0000159g0160 Nicotiana tabacum HOM05D004393 ORTHO05D004897 1.4e-49 201.1 334 41.9
Gohir.A09G117000 Gossypium hirsutum HOM05D004393 ORTHO05D004897 2.3e-49 200.3 361 41.0
Gohir.D09G113900 Gossypium hirsutum HOM05D004393 ORTHO05D004897 2.3e-49 200.3 342 42.4
PGSC0003DMG400009216 Solanum tuberosum HOM05D004393 ORTHO05D004897 2.3e-49 200.3 261 47.9
Nn5g27793 Nelumbo nucifera HOM05D004393 ORTHO05D004897 4.0e-49 199.5 294 45.6
Gorai.006G131600 Gossypium raimondii HOM05D004393 ORTHO05D004897 8.9e-49 198.4 315 42.9
Nitab4.5_0009001g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 1.2e-48 198.0 334 40.7
Solyc11g017130.2 Solanum lycopersicum HOM05D004393 ORTHO05D004897 1.2e-48 198.0 252 48.8
CSS0013393 Camellia sinensis var. sinensis HOM05D004393 ORTHO05D004897 2.0e-48 197.2 316 43.0
Sopen11g009080 Solanum pennellii HOM05D004393 ORTHO05D004897 2.0e-48 197.2 258 48.1
QL02p034089 Quercus lobata HOM05D004393 ORTHO05D004897 3.4e-48 196.4 325 41.2
Cpa.g.sc66.57 Carica papaya HOM05D004393 ORTHO05D004897 4.4e-48 196.1 363 39.7
GSVIVG01034506001 Vitis vinifera HOM05D004393 ORTHO05D004897 4.4e-48 196.1 363 40.2
COL.COLO4_29964 Corchorus olitorius HOM05D004393 ORTHO05D004897 1.3e-47 194.5 338 42.0
Cc00_g08770 Coffea canephora HOM05D004393 ORTHO05D004897 2.9e-47 193.4 295 44.4
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 2.9e-47 193.4 315 41.9
Lalb_Chr03g0035861 Lupinus albus HOM05D004393 ORTHO05D004897 6.4e-47 192.2 334 38.9
FvH4_2g12232 Fragaria vesca HOM05D004393 ORTHO05D004897 1.1e-46 191.4 315 41.6
Nitab4.5_0000303g0030 Nicotiana tabacum HOM05D004393 ORTHO05D004897 1.1e-46 191.4 289 43.6
PSO170G6764 Papaver somniferum HOM05D004393 ORTHO05D004897 1.1e-46 191.4 327 41.9
Potri.013G114700 Populus trichocarpa HOM05D004393 ORTHO05D004897 1.1e-46 191.4 367 40.6
Nitab4.5_0004461g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 1.4e-46 191.0 338 41.1
RcHm_v2.0_Chr6g0272171 Rosa chinensis HOM05D004393 ORTHO05D004897 1.4e-46 191.0 339 39.5
Sabra13G0097000 Salix brachista HOM05D004393 ORTHO05D004897 1.4e-46 191.0 340 42.6
MBI16_g07683_MAGBIO Magnolia biondii HOM05D004393 ORTHO05D004897 2.4e-46 190.3 341 39.6
FAN20G0457 Fragaria x ananassa HOM05D004393 ORTHO05D004897 3.2e-46 189.9 320 41.2
PSO782G0828 Papaver somniferum HOM05D004393 ORTHO05D004897 3.2e-46 189.9 328 41.8
TAR381G1591 Trochodendron aralioides HOM05D004393 ORTHO05D004897 3.2e-46 189.9 330 42.1
Peaxi162Scf00495g00119 Petunia axillaris HOM05D004393 ORTHO05D004897 4.1e-46 189.5 338 41.4
CANSAT25G3510 Cannabis sativa HOM05D004393 ORTHO05D004897 5.4e-46 189.1 301 43.5
CAN.G61.21 Capsicum annuum HOM05D004393 ORTHO05D004897 5.4e-46 189.1 245 47.8
FAN27G3511 Fragaria x ananassa HOM05D004393 ORTHO05D004897 5.4e-46 189.1 315 42.2
Phvul.004G084400 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 7.1e-46 188.7 253 45.8
CAN.G199.23 Capsicum annuum HOM05D004393 ORTHO05D004897 9.2e-46 188.3 337 41.2
PGR042G3903 Punica granatum HOM05D004393 ORTHO05D004897 9.2e-46 188.3 287 44.9
Solyc06g065450.3 Solanum lycopersicum HOM05D004393 ORTHO05D004897 1.2e-45 188.0 321 41.1
arahy.Tifrunner.gnm1.ann1.Y0NS3Z Arachis hypogaea HOM05D004393 ORTHO05D004897 2.7e-45 186.8 249 45.4
PGSC0003DMG402026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 4.6e-45 186.0 368 37.8
Sopen06g023940 Solanum pennellii HOM05D004393 ORTHO05D004897 6.0e-45 185.7 335 41.2
Lalb_Chr01g0009981 Lupinus albus HOM05D004393 ORTHO05D004897 7.8e-45 185.3 246 46.3
Peaxi162Scf00268g01216 Petunia axillaris HOM05D004393 ORTHO05D004897 7.8e-45 185.3 333 38.7
arahy.Tifrunner.gnm1.ann1.1646XJ Arachis hypogaea HOM05D004393 ORTHO05D004897 1.0e-44 184.9 249 44.6
Rhsim06G0097300 Rhododendron simsii HOM05D004393 ORTHO05D004897 2.3e-44 183.7 314 42.0
Actinidia23321 Actinidia chinensis HOM05D004393 ORTHO05D004897 3.0e-44 183.3 330 42.7
Sc01g0001720 Simmondsia chinensis HOM05D004393 ORTHO05D004897 3.9e-44 183.0 327 40.4
TWI60G1027 Tripterygium wilfordii HOM05D004393 ORTHO05D004897 6.6e-44 182.2 329 40.7
CsaV3_7G024210 Cucumis sativus L. HOM05D004393 ORTHO05D004897 4.3e-43 179.5 312 41.3
ATR0584G230 Amborella trichopoda HOM05D004393 ORTHO05D004897 7.3e-43 178.7 307 40.4
Lj2g0019211 Lotus japonicus HOM05D004393 ORTHO05D004897 1.6e-42 177.6 313 39.3
Aqoxy6G00122 Aquilegia oxysepala HOM05D004393 ORTHO05D004897 6.2e-42 175.6 310 39.7
arahy.Tifrunner.gnm1.ann1.MV35XS Arachis hypogaea HOM05D004393 ORTHO05D004897 6.2e-42 175.6 263 41.8
VMungo0464G1718 Vigna mungo HOM05D004393 ORTHO05D004897 8.1e-42 175.3 329 38.6
Glyma.16G156500 Glycine max HOM05D004393 ORTHO05D004897 3.1e-41 173.3 314 40.1
AUR62023578 Chenopodium quinoa HOM05D004393 ORTHO05D004897 4.0e-41 172.9 282 40.1
Glyma.02G074500 Glycine max HOM05D004393 ORTHO05D004897 4.0e-41 172.9 314 40.1
HPP92_019371 Vanilla planifolia HOM05D004393 ORTHO05D004897 6.8e-41 172.2 344 37.2
Lj7C297T5 Lonicera japonica HOM05D004393 ORTHO05D004897 1.5e-40 171.0 289 40.8
Oeu039591.2 Olea europaea HOM05D004393 ORTHO05D004897 2.6e-40 170.2 248 43.1
Sed0026578 Sechium edule HOM05D004393 ORTHO05D004897 2.6e-40 170.2 329 40.4
Hund27078 Selenicereus undatus HOM05D004393 ORTHO05D004897 2.6e-40 170.2 306 39.5
ClCG09G010400 Citrullus lanatus HOM05D004393 ORTHO05D004897 3.4e-40 169.9 305 40.0
AUR62004661 Chenopodium quinoa HOM05D004393 ORTHO05D004897 5.8e-40 169.1 282 40.1
DCAR_014776 Daucus carota HOM05D004393 ORTHO05D004897 9.9e-40 168.3 355 37.5
arahy.Tifrunner.gnm1.ann1.6817V4 Arachis hypogaea HOM05D004393 ORTHO05D004897 1.3e-39 167.9 263 41.1
MELO3C023669.2 Cucumis melo HOM05D004393 ORTHO05D004897 1.7e-39 167.5 257 44.7
Phvul.007G090600 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 1.4e-38 164.5 270 43.0
VMungo0720G0020 Vigna mungo HOM05D004393 ORTHO05D004897 3.2e-38 163.3 240 42.1
vmacro12498 Vaccinium macrocarpon HOM05D004393 ORTHO05D004897 4.2e-38 162.9 331 39.0
Medtr1g096000 Medicago truncatula HOM05D004393 ORTHO05D004897 7.1e-38 162.2 257 39.7
MD10G1046600 Malus domestica HOM05D004393 ORTHO05D004897 1.6e-37 161.0 323 38.1
Oeu021008.1 Olea europaea HOM05D004393 ORTHO05D004897 1.6e-37 161.0 328 36.0
Lj5g0027195 Lotus japonicus HOM05D004393 ORTHO05D004897 1.0e-36 158.3 241 44.0
SalBow7G1128 Salvia bowleyana HOM05D004393 ORTHO05D004897 1.3e-36 157.9 248 43.5
Ah.05g177790 Amaranthus hybridus HOM05D004393 ORTHO05D004897 1.7e-36 157.5 242 41.7
Zm00001eb091700 Zea mays HOM05D004393 ORTHO05D004897 2.3e-36 157.1 280 41.1
Os11g0171700 Oryza sativa ssp. japonica HOM05D004393 ORTHO05D004897 3.0e-36 156.8 269 40.9
Psat6g185840 Pisum sativum HOM05D004393 ORTHO05D004897 3.9e-36 156.4 219 42.9
MSTRG.25436 Avicennia marina HOM05D004393 ORTHO05D004897 8.7e-36 155.2 304 38.2
Glyma.10G215100 Glycine max HOM05D004393 ORTHO05D004897 8.7e-36 155.2 250 41.6
TPR.G1817 Trifolium pratense HOM05D004393 ORTHO05D004897 2.5e-35 153.7 256 40.2
SEGI_03768 Sequoiadendron giganteum HOM05D004393 ORTHO05D004897 3.6e-34 149.8 235 37.9
Migut.C01240 Erythranthe guttata HOM05D004393 ORTHO05D004897 3.4e-32 143.3 242 41.7
CDE04G2403 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 5.8e-32 142.5 329 33.4
SGA_v2.0_scaffold118G32462 Striga asiatica HOM05D004393 ORTHO05D004897 2.2e-31 140.6 316 37.0
Ca_10603_v3 Cicer arietinum L. HOM05D004393 ORTHO05D004897 3.2e-30 136.7 262 39.7
Lsat_1_v5_gn_4_119261 Lactuca sativa HOM05D004393 ORTHO05D004897 5.4e-30 136.0 287 38.0
ECA232G2172 Erigeron canadensis HOM05D004393 ORTHO05D004897 3.5e-29 133.3 241 39.4
SGA_v2.0_scaffold24G10548 Striga asiatica HOM05D004393 ORTHO05D004897 6.6e-28 129.0 255 39.6
HanXRQChr09g0268931 Helianthus annuus HOM05D004393 ORTHO05D004897 3.6e-26 123.2 287 33.1
SHI09053 Sapria himalayana HOM05D004393 ORTHO05D004897 1.8e-25 120.9 241 37.3
AagrBONN_evm.TU.Sc2ySwM_344.4382 Anthoceros agrestis HOM05D004393 ORTHO05D004897 1.5e-24 117.9 244 34.8
TAR624G0853 Trochodendron aralioides HOM05D004393 ORTHO05D004897 3.8e-23 113.2 160 41.9
Mapoly0005s0164 Marchantia polymorpha HOM05D004393 ORTHO05D004897 6.4e-23 112.5 279 32.6
Lalb_Chr24g0401061 Lupinus albus HOM05D004393 ORTHO05D004897 4.6e-21 106.3 166 42.8
SMO351G0170 Selaginella moellendorffii HOM05D004393 ORTHO05D004897 2.3e-20 104.0 283 30.0
Glyma.20G176566 Glycine max HOM05D004393 ORTHO05D004897 4.3e-19 99.8 190 40.5
Pp3c16_5970 Physcomitrium patens HOM05D043451 ORTHO05D004897 3.7e-18 96.7 204 32.8
Pp3c27_1110 Physcomitrium patens HOM05D004393 ORTHO05D004897 2.6e-16 90.5 238 33.6
CDE12G0855 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 2.7e-13 80.5 119 40.3
AUR62012506 Chenopodium quinoa HOM05D004393 ORTHO05D004897 6.0e-13 79.3 250 32.4
Peaxi162Scf00207g01617 Petunia axillaris HOM05D004393 ORTHO05D004897 2.3e-12 77.4 83 48.2
Pp3c5_9820 Physcomitrium patens HOM05D004393 ORTHO05D004897 3.3e-11 73.6 294 24.8
EL10Ac1g00069 Beta vulgaris HOM05D004393 ORTHO05D004897 3.7e-10 70.1 138 36.2


User provided reference genes

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