Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 2.5e-124 448.7 222 100.0
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 3.3e-108 395.2 212 92.5
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 7.4e-108 394.0 212 92.0
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 7.4e-108 394.0 212 92.0
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 4.2e-103 378.3 212 90.1
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 3.5e-102 375.2 201 92.5
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 6.3e-99 364.4 219 84.5
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 2.5e-87 325.9 209 80.9
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 4.8e-83 311.6 218 76.1
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 2.5e-79 299.3 215 72.1
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 7.7e-73 277.7 223 67.7
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 7.2e-63 244.6 198 66.7
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 2.6e-60 236.1 168 75.6
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 2.9e-51 206.1 208 56.7
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 3.7e-51 205.7 123 81.3
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 1.1e-50 204.1 207 55.1
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 1.1e-50 204.1 207 57.0
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.1e-50 204.1 211 56.4
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 1.4e-50 203.8 215 56.7
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 1.4e-50 203.8 233 53.6
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.4e-50 203.8 210 56.7
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 2.4e-50 203.0 223 54.3
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.2e-50 202.6 217 55.8
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 7.0e-50 201.4 217 55.3
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 9.2e-50 201.1 207 56.5
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 9.2e-50 201.1 214 57.0
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.2e-49 200.7 207 56.5
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.2e-49 200.7 207 56.5
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 1.2e-49 200.7 212 55.7
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 2.0e-49 199.9 213 54.9
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.7e-49 199.5 213 56.3
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 4.6e-49 198.7 213 54.5
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 5.9e-49 198.4 210 55.2
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 5.9e-49 198.4 207 53.6
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 5.9e-49 198.4 207 55.6
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 7.8e-49 198.0 205 55.6
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.3e-48 197.2 208 54.3
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.3e-48 197.2 213 55.4
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.7e-48 196.8 207 54.1
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.7e-48 196.8 207 56.0
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.7e-48 196.8 215 54.4
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 2.3e-48 196.4 206 54.4
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 2.3e-48 196.4 213 53.5
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.0e-48 196.1 217 54.4
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 3.9e-48 195.7 205 55.1
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.6e-48 194.9 215 54.0
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 1.5e-47 193.7 209 55.5
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 3.3e-47 192.6 207 54.6
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 4.3e-47 192.2 214 54.2
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 5.6e-47 191.8 208 53.8
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 7.3e-47 191.4 210 52.9
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.3e-47 191.4 213 54.0
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 9.5e-47 191.0 205 53.2
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 1.2e-46 190.7 202 55.9
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 1.6e-46 190.3 227 49.3
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 2.1e-46 189.9 206 53.4
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 2.1e-46 189.9 240 50.8
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 2.8e-46 189.5 207 55.6
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 3.6e-46 189.1 206 52.4
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 4.7e-46 188.7 213 50.7
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 4.7e-46 188.7 221 53.8
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 4.7e-46 188.7 206 51.5
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.0e-45 187.6 206 52.9
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.0e-45 187.6 206 52.9
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 1.0e-45 187.6 206 52.9
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 1.4e-45 187.2 226 50.4
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 1.8e-45 186.8 206 52.9
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.8e-45 186.8 205 53.7
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 2.3e-45 186.4 205 52.7
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 5.2e-45 185.3 274 44.2
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 6.8e-45 184.9 207 52.2
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 6.8e-45 184.9 215 52.1
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 6.8e-45 184.9 206 52.9
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.2e-44 184.1 219 52.1
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 1.5e-44 183.7 206 51.9
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 1.5e-44 183.7 215 51.2
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.5e-44 183.7 204 51.0
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 1.5e-44 183.7 206 54.4
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 2.0e-44 183.3 206 53.9
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 2.6e-44 183.0 207 51.2
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 2.6e-44 183.0 221 49.8
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 2.6e-44 183.0 208 53.8
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 4.4e-44 182.2 206 51.9
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 4.4e-44 182.2 210 51.4
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 5.8e-44 181.8 205 50.2
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 5.8e-44 181.8 212 51.9
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 9.8e-44 181.0 130 72.3
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 1.3e-43 180.6 208 52.4
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 1.3e-43 180.6 198 52.5
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 2.9e-43 179.5 206 52.4
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 4.9e-43 178.7 90 94.4
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 4.9e-43 178.7 90 94.4
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 4.9e-43 178.7 210 52.4
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 1.1e-42 177.6 213 51.6
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 1.4e-42 177.2 219 49.8
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 1.4e-42 177.2 205 49.8
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.9e-42 176.8 209 51.7
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 5.4e-42 175.3 207 49.8
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 5.4e-42 175.3 105 80.0
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 5.4e-42 175.3 207 50.2
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 9.2e-42 174.5 201 51.7
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 1.2e-41 174.1 214 51.4
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 2.0e-41 173.3 220 49.5
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 2.0e-41 173.3 212 52.8
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 2.0e-41 173.3 209 52.2
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 2.0e-41 173.3 215 50.7
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 3.5e-41 172.6 218 49.1
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 7.8e-41 171.4 126 70.6
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 1.3e-40 170.6 211 48.8
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 3.0e-40 169.5 233 44.6
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 6.6e-40 168.3 106 77.4
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 8.6e-40 167.9 207 48.3
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 8.6e-40 167.9 207 50.7
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 1.1e-39 167.5 133 66.9
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.1e-39 167.5 220 47.3
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.9e-39 166.8 209 51.7
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.5e-39 166.4 150 62.0
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 3.3e-39 166.0 103 78.6
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 7.3e-39 164.9 206 51.5
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 9.5e-39 164.5 199 47.7
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 9.5e-39 164.5 103 77.7
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 1.2e-38 164.1 119 68.9
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 1.2e-38 164.1 195 48.7
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 1.6e-38 163.7 216 48.6
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.6e-38 163.7 210 49.0
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 1.6e-38 163.7 120 69.2
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 2.1e-38 163.3 256 42.6
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 3.6e-38 162.5 119 68.1
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 3.6e-38 162.5 108 75.0
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 4.7e-38 162.2 187 51.3
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 6.2e-38 161.8 208 48.1
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 1.1e-37 161.0 106 75.5
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 1.1e-37 161.0 203 48.8
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 1.8e-37 160.2 208 48.1
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 1.8e-37 160.2 207 48.8
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 2.3e-37 159.8 206 49.0
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 3.1e-37 159.5 209 48.3
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 4.0e-37 159.1 210 47.6
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 8.9e-37 157.9 207 48.3
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 1.2e-36 157.5 128 64.1
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 1.5e-36 157.1 157 53.5
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 3.4e-36 156.0 110 64.5
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 4.4e-36 155.6 218 47.2
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 5.8e-36 155.2 123 65.0
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.1e-34 151.0 207 45.4
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 1.1e-34 151.0 122 63.1
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 7.1e-34 148.3 105 67.6
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 1.6e-33 147.1 127 60.6
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 1.6e-33 147.1 208 43.8
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 2.7e-33 146.4 121 62.0
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 8.6e-32 141.4 128 60.2
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 8.6e-32 141.4 205 43.9
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 3.3e-31 139.4 206 43.2
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 3.3e-31 139.4 199 44.7
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.2e-28 131.0 85 74.1
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 2.2e-27 126.7 161 47.2
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 1.4e-26 124.0 107 56.1
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 1.2e-22 110.9 79 65.8
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 1.8e-21 107.1 111 54.1
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 4.4e-20 102.4 100 56.0
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 1.3e-14 84.3 90 45.6
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 4.9e-11 72.4 80 50.0
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 9.3e-10 68.2 47 66.0
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.3e-08 63.5 205 30.2
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 3.0e-08 63.2 110 35.5
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 1.6e-06 57.4 40 65.0


User provided reference genes

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