Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17700 Brassica carinata HOM05D003149 ORTHO05D003529 1.7e-35 152.1 76 100.0
Sp1g04680 Schrenkiella parvula HOM05D003149 ORTHO05D003529 3.0e-24 114.8 71 77.5
BcaC05g24329 Brassica carinata HOM05D003149 ORTHO05D003529 3.9e-24 114.4 61 90.2
AL1G15800 Arabidopsis lyrata HOM05D003149 ORTHO05D003529 5.0e-24 114.0 70 78.6
C05p04220 Brassica napus HOM05D003149 ORTHO05D003529 5.0e-24 114.0 61 90.2
A10p04560 Brassica napus HOM05D003149 ORTHO05D003529 1.1e-23 112.8 61 88.5
Thhalv10008336m.g Eutrema salsugineum HOM05D003149 ORTHO05D003529 1.1e-23 112.8 71 76.1
BolC5t29196H Brassica oleracea HOM05D003149 ORTHO05D003529 1.9e-23 112.1 61 88.5
BraA10t42720Z Brassica rapa HOM05D003149 ORTHO05D003529 1.9e-23 112.1 61 88.5
Carub.0001s0522 Capsella rubella HOM05D003149 ORTHO05D003529 1.9e-23 112.1 61 86.9
AT1G05860 Arabidopsis thaliana HOM05D003149 ORTHO05D003529 4.3e-23 110.9 70 75.7
A08p36250 Brassica napus HOM05D003149 ORTHO05D003529 9.5e-23 109.8 61 85.2
C08p02270 Brassica napus HOM05D003149 ORTHO05D003529 2.1e-22 108.6 61 83.6
BolC8t47019H Brassica oleracea HOM05D003149 ORTHO05D003529 2.1e-22 108.6 61 83.6
CARHR005400 Cardamine hirsuta HOM05D003149 ORTHO05D003529 2.1e-22 108.6 70 74.3
BcaC09g49846 Brassica carinata HOM05D003149 ORTHO05D003529 5.2e-21 104.0 64 81.2
Thhalv10017019m.g Eutrema salsugineum HOM05D003149 ORTHO05D003529 5.4e-18 94.0 56 80.4
AT2G31600 Arabidopsis thaliana HOM05D003149 ORTHO05D003529 3.5e-17 91.3 56 78.6
CARHR125250 Cardamine hirsuta HOM05D003149 ORTHO05D003529 4.6e-17 90.9 56 76.8
AL5G34840 Arabidopsis lyrata HOM05D003149 ORTHO05D003529 6.0e-17 90.5 70 61.4
AT3G53860 Arabidopsis thaliana HOM05D003149 ORTHO05D003529 1.0e-16 89.7 61 70.5
Sp4g14000 Schrenkiella parvula HOM05D003149 ORTHO05D003529 1.3e-16 89.4 56 76.8
AL4G26850 Arabidopsis lyrata HOM05D003149 ORTHO05D003529 2.3e-16 88.6 59 72.9
C03p20870 Brassica napus HOM05D003149 ORTHO05D003529 2.3e-16 88.6 56 76.8
BolC3t14437H Brassica oleracea HOM05D003149 ORTHO05D003529 2.3e-16 88.6 56 76.8
Carub.0004s1290 Capsella rubella HOM05D003149 ORTHO05D003529 3.9e-16 87.8 56 75.0
Aa31LG5G5350 Aethionema arabicum HOM05D003149 ORTHO05D003529 1.9e-15 85.5 62 66.1
A03p17790 Brassica napus HOM05D003149 ORTHO05D003529 1.9e-15 85.5 56 75.0
BraA03t11043Z Brassica rapa HOM05D003149 ORTHO05D003529 1.9e-15 85.5 56 75.0
THA.LOC104826191 Tarenaya hassleriana HOM05D003149 ORTHO05D003529 1.6e-14 82.4 61 68.9
THA.LOC104815863 Tarenaya hassleriana HOM05D003149 ORTHO05D003529 2.1e-14 82.0 61 67.2
BcaC02g11267 Brassica carinata HOM05D003149 ORTHO05D003529 8.9e-13 76.6 65 63.1
C04p18280 Brassica napus HOM05D003149 ORTHO05D003529 8.9e-13 76.6 65 63.1
BolC4t23385H Brassica oleracea HOM05D003149 ORTHO05D003529 8.9e-13 76.6 65 63.1
Atru.chr3.1569 Acer truncatum HOM05D003149 ORTHO05D003529 4.4e-12 74.3 62 59.7
Atru.chr3.1588 Acer truncatum HOM05D003149 ORTHO05D003529 4.4e-12 74.3 62 59.7
Dinv22647 Davidia involucrata HOM05D003149 ORTHO05D003529 2.9e-11 71.6 62 59.7
CiPaw.02G056200 Carya illinoinensis HOM05D003149 ORTHO05D003529 4.9e-11 70.9 72 50.0
Cpa.g.sc71.18 Carica papaya HOM05D003149 ORTHO05D003529 1.1e-10 69.7 62 56.5
Cfa015771 Carpinus fangiana HOM05D003149 ORTHO05D003529 1.4e-10 69.3 68 51.5
Sabra07G0102400 Salix brachista HOM05D003149 ORTHO05D003529 1.4e-10 69.3 71 49.3
Manes.04G040400 Manihot esculenta HOM05D003149 ORTHO05D003529 1.9e-10 68.9 70 51.4
Hma1.2p1_1961F.1_g309090 Hydrangea macrophylla HOM05D003149 ORTHO05D003529 3.2e-10 68.2 62 58.1
RcHm_v2.0_Chr6g0273581 Rosa chinensis HOM05D003149 ORTHO05D003529 3.2e-10 68.2 69 47.8
Sc19g0002190 Simmondsia chinensis HOM05D003149 ORTHO05D003529 3.2e-10 68.2 70 51.4
MBI08_g01803_MAGBIO Magnolia biondii HOM05D003149 ORTHO05D003529 5.4e-10 67.4 71 46.5
RcHm_v2.0_Chr4g0407911 Rosa chinensis HOM05D003149 ORTHO05D003529 5.4e-10 67.4 70 48.6
Thecc.05G003000 Theobroma cacao HOM05D003149 ORTHO05D003529 5.4e-10 67.4 62 56.5
Atru.chr12.1650 Acer truncatum HOM05D003149 ORTHO05D003529 7.1e-10 67.0 70 50.0
Lsat_1_v5_gn_0_14541 Lactuca sativa HOM05D003149 ORTHO05D003529 7.1e-10 67.0 62 54.8
Ciclev10012589m.g Citrus clementina HOM05D003149 ORTHO05D003529 9.2e-10 66.6 70 50.0
Eucgr.H00413 Eucalyptus grandis HOM05D003149 ORTHO05D003529 1.2e-09 66.2 57 57.9
FAN24G1951 Fragaria x ananassa HOM05D003149 ORTHO05D003529 1.2e-09 66.2 70 50.0
HanXRQChr16g0511871 Helianthus annuus HOM05D003149 ORTHO05D003529 1.6e-09 65.9 62 54.8
Peaxi162Scf00021g00202 Petunia axillaris HOM05D003149 ORTHO05D003529 1.6e-09 65.9 69 49.3
Potri.007G126300 Populus trichocarpa HOM05D003149 ORTHO05D003529 1.6e-09 65.9 70 48.6
RcHm_v2.0_Chr6g0263161 Rosa chinensis HOM05D003149 ORTHO05D003529 1.6e-09 65.9 70 48.6
Sabra10G0138100 Salix brachista HOM05D003149 ORTHO05D003529 1.6e-09 65.9 70 47.1
FvH4_4g11360 Fragaria vesca HOM05D003149 ORTHO05D003529 2.1e-09 65.5 62 53.2
FAN07G0836 Fragaria x ananassa HOM05D003149 ORTHO05D003529 2.1e-09 65.5 62 53.2
Nitab4.5_0004301g0060 Nicotiana tabacum HOM05D003149 ORTHO05D003529 2.1e-09 65.5 65 52.3
CAN.G169.2 Capsicum annuum HOM05D003149 ORTHO05D003529 2.7e-09 65.1 65 52.3
CAN.G282.52 Capsicum annuum HOM05D003149 ORTHO05D003529 2.7e-09 65.1 63 54.0
Ciclev10013985m.g Citrus clementina HOM05D003149 ORTHO05D003529 2.7e-09 65.1 56 58.9
Ciclev10024271m.g Citrus clementina HOM05D003149 ORTHO05D003529 2.7e-09 65.1 56 58.9
Dinv29078 Davidia involucrata HOM05D003149 ORTHO05D003529 2.7e-09 65.1 70 50.0
FvH4_2g08280 Fragaria vesca HOM05D003149 ORTHO05D003529 2.7e-09 65.1 70 48.6
Nn1g09739 Nelumbo nucifera HOM05D003149 ORTHO05D003529 2.7e-09 65.1 70 50.0
AUR62002600 Chenopodium quinoa HOM05D003149 ORTHO05D003529 3.5e-09 64.7 61 54.1
AUR62030021 Chenopodium quinoa HOM05D003149 ORTHO05D003529 3.5e-09 64.7 61 54.1
ECA232G0294 Erigeron canadensis HOM05D003149 ORTHO05D003529 3.5e-09 64.7 62 56.5
Migut.F01844 Erythranthe guttata HOM05D003149 ORTHO05D003529 3.5e-09 64.7 62 53.2
Lj6A60G38 Lonicera japonica HOM05D003149 ORTHO05D003529 3.5e-09 64.7 62 54.8
PGR083G1968 Punica granatum HOM05D003149 ORTHO05D003529 3.5e-09 64.7 62 53.2
CDE08G0700 Ceratophyllum demersum HOM05D003149 ORTHO05D003529 6.0e-09 63.9 71 40.8
FAN15G2890 Fragaria x ananassa HOM05D003149 ORTHO05D003529 6.0e-09 63.9 70 48.6
Hma1.2p1_0597F.1_g186520 Hydrangea macrophylla HOM05D003149 ORTHO05D003529 6.0e-09 63.9 62 53.2
Potri.010G180200 Populus trichocarpa HOM05D003149 ORTHO05D003529 7.8e-09 63.5 70 48.6
HanXRQChr16g0517981 Helianthus annuus HOM05D003149 ORTHO05D003529 1.0e-08 63.2 57 56.1
MD04G1037400 Malus domestica HOM05D003149 ORTHO05D003529 1.0e-08 63.2 62 53.2
Ciclev10021620m.g Citrus clementina HOM05D003149 ORTHO05D003529 1.3e-08 62.8 56 57.1
Cc09_g04100 Coffea canephora HOM05D003149 ORTHO05D003529 1.3e-08 62.8 55 60.0
COL.COLO4_14418 Corchorus olitorius HOM05D001780 ORTHO05D004373 1.3e-08 62.8 56 57.1
Duzib093G1636 Durio zibethinus HOM05D003149 ORTHO05D003529 1.3e-08 62.8 56 58.9
QL10p047472 Quercus lobata HOM05D003149 ORTHO05D003529 1.3e-08 62.8 62 50.0
unitig_699.g19736 Utricularia gibba HOM05D003149 ORTHO05D003529 1.7e-08 62.4 56 53.6
Oeu001216.1 Olea europaea HOM05D003149 ORTHO05D003529 2.3e-08 62.0 62 54.8
Sabra17G0021200 Salix brachista HOM05D003149 ORTHO05D003529 2.3e-08 62.0 62 50.0
CANSAT01G1641 Cannabis sativa HOM05D003149 ORTHO05D003529 3.9e-08 61.2 70 45.7
DCAR_023903 Daucus carota HOM05D003149 ORTHO05D003529 5.1e-08 60.8 62 53.2
MBI11_g35029_MAGBIO Magnolia biondii HOM05D003149 ORTHO05D003529 5.1e-08 60.8 65 46.2
Aqoxy2G04110 Aquilegia oxysepala HOM05D003149 ORTHO05D003529 6.6e-08 60.5 70 44.3
MSTRG.8193 Avicennia marina HOM05D003149 ORTHO05D003529 6.6e-08 60.5 62 50.0
CSS0012520 Camellia sinensis var. sinensis HOM05D003149 ORTHO05D003529 6.6e-08 60.5 62 50.0
Nitab4.5_0000069g0240 Nicotiana tabacum HOM05D003149 ORTHO05D003529 6.6e-08 60.5 62 51.6
Potri.017G035200 Populus trichocarpa HOM05D003149 ORTHO05D003529 6.6e-08 60.5 62 50.0
Prupe.1G186800 Prunus persica HOM05D003149 ORTHO05D003529 8.7e-08 60.1 56 55.4
TAR362G1330 Trochodendron aralioides HOM05D003149 ORTHO05D003529 8.7e-08 60.1 59 50.8
HPP92_004557 Vanilla planifolia HOM05D003149 ORTHO05D003529 8.7e-08 60.1 51 54.9
GSVIVG01010732001 Vitis vinifera HOM05D003149 ORTHO05D003529 8.7e-08 60.1 61 49.2
Lalb_Chr21g0307621 Lupinus albus HOM05D003149 ORTHO05D003529 1.1e-07 59.7 61 47.5
SGA_v2.0_scaffold340G49312 Striga asiatica HOM05D003149 ORTHO05D003529 1.1e-07 59.7 62 50.0
Actinidia03243 Actinidia chinensis HOM05D003149 ORTHO05D003529 1.5e-07 59.3 54 55.6
Cfa006218 Carpinus fangiana HOM05D003149 ORTHO05D003529 1.5e-07 59.3 70 45.7
SEGI_08161 Sequoiadendron giganteum HOM05D003149 ORTHO05D003529 1.5e-07 59.3 71 43.7
TPR.G31054 Trifolium pratense HOM05D003149 ORTHO05D003529 1.5e-07 59.3 64 45.3
GSVIVG01003749001 Vitis vinifera HOM05D003149 ORTHO05D003529 1.5e-07 59.3 68 44.1
GSVIVG01003753001 Vitis vinifera HOM05D003149 ORTHO05D003529 1.5e-07 59.3 68 44.1
Gohir.A09G168900 Gossypium hirsutum HOM05D003149 ORTHO05D003529 2.5e-07 58.5 56 53.6
Gohir.D09G164600 Gossypium hirsutum HOM05D003149 ORTHO05D003529 2.5e-07 58.5 56 53.6
Gorai.006G186400 Gossypium raimondii HOM05D003149 ORTHO05D003529 2.5e-07 58.5 56 53.6
Haze_04605 Corylus avellana HOM05D003149 ORTHO05D003529 4.3e-07 57.8 69 44.9
Manes.11G117400 Manihot esculenta HOM05D003149 ORTHO05D003529 4.3e-07 57.8 62 53.2
Rhsim05G0164400 Rhododendron simsii HOM05D003149 ORTHO05D003529 4.3e-07 57.8 66 48.5
SEGI_35784 Sequoiadendron giganteum HOM05D003149 ORTHO05D003529 4.3e-07 57.8 71 42.3
DCAR_008984 Daucus carota HOM05D003149 ORTHO05D003529 7.3e-07 57.0 56 51.8
SGA_v2.0_scaffold122G33204 Striga asiatica HOM05D003149 ORTHO05D003529 7.3e-07 57.0 62 48.4
ATR0743G205 Amborella trichopoda HOM05D003149 ORTHO05D003529 1.2e-06 56.2 61 42.6
ECA233G4617 Erigeron canadensis HOM05D003149 ORTHO05D003529 1.2e-06 56.2 62 46.8
HanXRQChr07g0186141 Helianthus annuus HOM05D003149 ORTHO05D003529 1.2e-06 56.2 65 41.5
Lsat_1_v5_gn_6_55141 Lactuca sativa HOM05D003149 ORTHO05D003529 1.6e-06 55.8 62 46.8
Ca_08244_v3 Cicer arietinum L. HOM05D003149 ORTHO05D003529 2.1e-06 55.5 62 41.9
CsaV3_7G025800 Cucumis sativus L. HOM05D003149 ORTHO05D003529 2.1e-06 55.5 60 46.7
Peaxi162Scf00563g00312 Petunia axillaris HOM05D003149 ORTHO05D003529 2.1e-06 55.5 53 49.1
Sc09g0001350 Simmondsia chinensis HOM05D003149 ORTHO05D003529 2.1e-06 55.5 65 41.5
PGSC0003DMG401016399 Solanum tuberosum HOM05D003149 ORTHO05D003529 2.1e-06 55.5 59 50.8
PGSC0003DMG402016399 Solanum tuberosum HOM05D003149 ORTHO05D003529 2.1e-06 55.5 58 51.7
Lj5g0018615 Lotus japonicus HOM05D003149 ORTHO05D003529 2.8e-06 55.1 58 48.3
SHI29168 Sapria himalayana HOM05D003149 ORTHO05D003529 2.8e-06 55.1 66 42.4
Hund22010 Selenicereus undatus HOM05D003149 ORTHO05D003529 2.8e-06 55.1 59 47.5
ClCG09G009140 Citrullus lanatus HOM05D003149 ORTHO05D003529 4.7e-06 54.3 60 46.7
Medtr7g084890 Medicago truncatula HOM05D003149 ORTHO05D003529 4.7e-06 54.3 64 40.6
Rhsim09G0030200 Rhododendron simsii HOM05D003149 ORTHO05D003529 4.7e-06 54.3 62 50.0
vmacro01066 Vaccinium macrocarpon HOM05D003149 ORTHO05D003529 4.7e-06 54.3 62 46.8
Ca_11405_v3 Cicer arietinum L. HOM05D003149 ORTHO05D003529 6.2e-06 53.9 66 40.9
Sopen01g003730 Solanum pennellii HOM05D003149 ORTHO05D003529 6.2e-06 53.9 63 47.6
PSO017G3277 Papaver somniferum HOM05D003149 ORTHO05D003529 8.1e-06 53.5 64 45.3
Solyc01g008200.3 Solanum lycopersicum HOM05D003149 ORTHO05D003529 8.1e-06 53.5 62 48.4
vmacro14059 Vaccinium macrocarpon HOM05D003149 ORTHO05D003529 8.1e-06 53.5 62 46.8


User provided reference genes

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