Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 1.2e-124 449.9 232 100.0
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 1.4e-120 436.4 233 97.0
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 1.4e-120 436.4 233 97.0
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 3.9e-120 434.9 233 96.6
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 3.9e-120 434.9 233 96.6
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 3.9e-120 434.9 233 96.6
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 4.4e-119 431.4 232 93.5
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 4.1e-117 424.9 232 92.7
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 5.2e-112 407.9 232 87.9
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.6e-111 405.6 232 87.9
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 3.7e-110 401.7 230 87.8
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.4e-93 346.7 195 87.2
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.3e-91 339.3 232 74.1
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.5e-90 336.7 232 73.7
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.9e-90 336.3 232 73.7
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 3.3e-90 335.5 232 75.0
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 5.6e-90 334.7 232 73.7
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 1.4e-88 330.1 230 72.6
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 6.8e-88 327.8 232 70.7
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 2.0e-87 326.2 230 72.2
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 2.0e-87 326.2 230 72.2
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 1.7e-86 323.2 230 71.3
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 1.7e-86 323.2 230 71.3
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 4.9e-86 321.6 230 71.7
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 5.4e-85 318.2 232 71.1
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 1.0e-83 313.9 223 71.3
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 5.0e-83 311.6 222 67.6
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 8.6e-83 310.8 223 70.4
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 5.4e-77 291.6 216 65.3
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 2.7e-76 289.3 220 62.3
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 2.7e-76 289.3 220 62.3
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 6.0e-76 288.1 223 62.3
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 7.8e-76 287.7 229 61.6
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 1.0e-75 287.3 228 65.8
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 1.0e-75 287.3 228 65.8
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 1.3e-75 287.0 228 61.0
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 2.3e-75 286.2 217 62.7
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 3.0e-75 285.8 226 62.8
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 3.9e-75 285.4 220 62.7
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 6.6e-75 284.6 220 60.5
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 6.6e-75 284.6 220 63.2
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 6.6e-75 284.6 220 60.9
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.5e-74 283.5 222 59.5
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 3.3e-74 282.3 222 60.8
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 7.3e-74 281.2 223 60.1
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 9.5e-74 280.8 226 61.5
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 1.6e-73 280.0 217 63.1
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 2.1e-73 279.6 221 61.1
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 2.1e-73 279.6 226 61.9
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.8e-73 279.3 227 60.4
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 2.8e-73 279.3 221 59.7
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 3.6e-73 278.9 226 60.2
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 3.6e-73 278.9 221 61.1
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 4.7e-73 278.5 225 59.6
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 6.2e-73 278.1 229 59.4
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 8.1e-73 277.7 216 60.2
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 8.1e-73 277.7 227 59.0
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 1.1e-72 277.3 220 61.8
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.1e-72 277.3 227 59.9
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.1e-72 277.3 227 59.9
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 1.1e-72 277.3 224 60.7
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.1e-72 277.3 224 61.6
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.1e-72 277.3 224 61.6
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 1.8e-72 276.6 216 60.6
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 4.0e-72 275.4 220 60.0
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 5.2e-72 275.0 219 60.3
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 5.2e-72 275.0 227 59.5
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 6.8e-72 274.6 223 60.5
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 8.9e-72 274.2 220 60.5
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 1.2e-71 273.9 221 60.6
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.5e-71 273.5 217 60.8
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 2.0e-71 273.1 226 59.3
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.6e-71 272.7 223 58.3
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 3.4e-71 272.3 230 58.7
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 3.4e-71 272.3 222 59.5
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 7.5e-71 271.2 213 60.6
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 7.5e-71 271.2 216 60.2
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 2.2e-70 269.6 220 59.5
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 2.2e-70 269.6 227 59.0
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 4.9e-70 268.5 227 59.0
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 1.4e-69 266.9 222 59.9
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 2.4e-69 266.2 221 58.8
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 3.2e-69 265.8 226 57.5
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 3.2e-69 265.8 226 58.0
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 5.4e-69 265.0 216 58.8
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 5.4e-69 265.0 218 59.6
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 5.4e-69 265.0 215 59.5
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 7.1e-69 264.6 218 61.0
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 9.2e-69 264.2 222 58.6
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.2e-68 263.8 220 57.3
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.6e-68 263.5 222 58.6
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 2.1e-68 263.1 220 55.5
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 2.7e-68 262.7 222 58.1
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 2.7e-68 262.7 223 54.7
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 7.8e-68 261.2 222 59.5
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 1.0e-67 260.8 225 57.3
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 2.3e-67 259.6 223 57.0
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 3.0e-67 259.2 231 57.1
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 3.9e-67 258.8 216 58.3
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 5.1e-67 258.5 220 56.4
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 8.6e-67 257.7 227 53.3
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.5e-66 256.9 225 56.4
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 5.6e-66 255.0 252 52.4
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 1.6e-65 253.4 223 54.3
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.6e-65 253.4 221 56.6
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 6.2e-65 251.5 219 56.6
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 8.1e-65 251.1 200 61.0
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 2.4e-64 249.6 202 60.9
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 1.2e-63 247.3 188 62.8
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 1.5e-63 246.9 218 59.6
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 1.5e-63 246.9 251 52.6
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 5.8e-63 245.0 180 69.4
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 7.6e-63 244.6 198 58.6
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 1.3e-62 243.8 193 57.5
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 2.2e-62 243.0 224 57.1
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 2.2e-62 243.0 216 55.1
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.9e-62 242.7 211 58.3
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.9e-62 242.7 211 58.3
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 1.4e-61 240.4 184 60.9
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 7.1e-61 238.0 280 48.9
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 6.0e-60 235.0 215 52.6
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 1.3e-59 233.8 222 54.1
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 3.9e-59 232.3 219 54.3
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 8.7e-59 231.1 219 53.0
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.3e-58 229.2 246 49.6
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 6.2e-57 224.9 191 55.0
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 2.4e-56 223.0 204 52.0
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.2e-55 220.7 219 50.7
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 9.9e-55 217.6 195 55.4
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 1.0e-51 207.6 156 60.3
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 1.1e-50 204.1 157 59.9
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 2.8e-49 199.5 207 49.3
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 9.0e-48 194.5 152 59.9
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.9e-46 189.5 219 45.2
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 8.4e-46 188.0 176 55.7
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 5.4e-45 185.3 151 58.3
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 7.9e-44 181.4 220 44.1
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.8e-43 180.3 233 43.8
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 1.8e-43 180.3 216 45.4
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 6.7e-43 178.3 168 51.8
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 1.4e-40 170.6 222 42.8
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.5e-39 167.2 220 41.8
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.2e-38 163.3 227 43.2
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 1.8e-35 153.7 119 63.0
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 2.1e-33 146.7 121 57.9
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 2.8e-33 146.4 116 56.9
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 2.6e-31 139.8 193 39.9
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 2.8e-25 119.8 89 64.0
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 4.8e-25 119.0 147 40.1
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 9.0e-24 114.8 92 59.8
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 9.0e-24 114.8 124 48.4
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 1.0e-22 111.3 195 34.4
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 4.3e-18 95.9 69 72.5
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 1.3e-14 84.3 69 62.3
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 3.8e-14 82.8 153 34.6
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 3.8e-14 82.8 153 34.6
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 1.6e-12 77.4 70 50.0
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 4.7e-12 75.9 66 59.1
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.8e-09 66.6 76 48.7
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 4.1e-08 62.8 47 55.3


User provided reference genes

Program Settings