Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 2.2e-129 465.7 240 100.0
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 3.1e-120 435.3 240 94.6
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 2.6e-119 432.2 242 94.2
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 4.5e-119 431.4 242 93.8
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 1.0e-118 430.3 242 93.8
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 1.0e-118 430.3 242 93.8
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 3.6e-108 395.2 240 85.8
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 3.6e-108 395.2 240 85.8
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 1.4e-107 393.3 241 87.1
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 1.4e-107 393.3 241 87.1
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 4.0e-107 391.7 240 84.6
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 8.8e-107 390.6 240 86.2
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.5e-106 389.8 241 86.7
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 4.7e-100 368.2 241 81.3
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 2.8e-97 359.0 241 79.7
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 7.0e-96 354.4 222 85.6
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 6.8e-91 337.8 259 71.4
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.7e-86 323.2 241 73.4
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 8.6e-86 320.9 242 71.9
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 1.6e-84 316.6 221 74.2
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 8.9e-83 310.8 221 74.2
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.5e-82 310.1 178 86.5
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 5.6e-77 291.6 232 64.7
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 1.2e-76 290.4 229 65.5
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.1e-75 287.3 203 70.0
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 2.3e-75 286.2 244 63.1
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 6.8e-75 284.6 244 62.3
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.2e-74 283.9 247 60.3
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.5e-74 283.5 244 61.9
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.5e-74 283.5 244 61.9
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 2.0e-74 283.1 232 61.6
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 2.6e-74 282.7 227 65.6
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.4e-74 282.3 195 70.8
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 3.4e-74 282.3 242 64.5
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 4.4e-74 282.0 244 62.7
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 5.8e-74 281.6 229 65.5
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 1.3e-73 280.4 244 62.7
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 1.7e-73 280.0 239 60.3
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 2.2e-73 279.6 244 61.5
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 2.2e-73 279.6 244 61.5
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 2.9e-73 279.3 244 61.5
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 8.3e-73 277.7 246 62.6
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.4e-72 276.9 201 68.7
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.4e-72 276.9 241 59.3
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 3.2e-72 275.8 242 59.9
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 4.1e-72 275.4 247 59.5
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 5.4e-72 275.0 229 62.4
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 7.1e-72 274.6 240 62.1
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 2.1e-71 273.1 242 59.9
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 2.7e-71 272.7 244 61.5
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 6.0e-71 271.6 248 60.1
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 6.0e-71 271.6 240 61.7
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.8e-71 271.2 249 59.8
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.7e-70 270.0 238 60.1
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 2.3e-70 269.6 247 57.1
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 2.3e-70 269.6 239 61.9
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 2.3e-70 269.6 240 59.2
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.0e-70 269.2 240 61.2
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.9e-70 268.9 238 60.1
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 5.1e-70 268.5 240 61.7
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 6.6e-70 268.1 242 59.9
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 8.6e-70 267.7 238 59.7
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 1.1e-69 267.3 194 68.0
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.1e-69 267.3 239 61.5
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 1.5e-69 266.9 217 64.1
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 1.9e-69 266.5 240 58.8
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 3.3e-69 265.8 241 58.9
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 3.3e-69 265.8 241 58.9
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 3.3e-69 265.8 240 59.2
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 3.3e-69 265.8 228 60.5
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 4.3e-69 265.4 179 70.9
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 5.6e-69 265.0 240 57.9
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.3e-69 264.6 178 73.0
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 9.5e-69 264.2 185 68.6
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 9.5e-69 264.2 240 57.9
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 1.2e-68 263.8 240 57.9
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.6e-68 263.5 247 57.1
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 2.1e-68 263.1 191 66.5
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.8e-68 262.7 240 59.2
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.8e-68 262.7 240 60.8
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 3.6e-68 262.3 247 55.9
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 4.7e-68 261.9 243 58.4
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 1.1e-67 260.8 238 60.5
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.4e-67 260.4 178 71.9
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 1.8e-67 260.0 242 59.9
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 3.1e-67 259.2 178 71.3
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 5.2e-67 258.5 246 58.1
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 5.2e-67 258.5 241 57.7
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 5.2e-67 258.5 178 70.8
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 3.4e-66 255.8 204 62.3
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 5.8e-66 255.0 240 55.8
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 7.6e-66 254.6 242 58.7
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.3e-65 253.8 246 58.1
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.7e-65 253.4 242 58.7
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 1.7e-65 253.4 176 70.5
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 2.9e-65 252.7 246 55.3
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.8e-65 252.3 241 56.0
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 6.4e-65 251.5 246 57.3
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 1.1e-64 250.8 241 55.6
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 1.9e-64 250.0 251 57.0
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.2e-64 249.2 245 55.1
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.2e-64 249.2 240 55.0
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 5.4e-64 248.4 230 56.5
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 5.4e-64 248.4 178 67.4
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 1.6e-63 246.9 185 63.2
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 2.1e-63 246.5 251 55.4
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 4.6e-63 245.4 182 66.5
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 4.6e-63 245.4 151 78.8
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 6.0e-63 245.0 165 80.6
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 1.3e-62 243.8 219 59.8
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 2.3e-62 243.0 250 53.2
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 3.0e-62 242.7 214 59.8
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 3.0e-62 242.7 246 53.7
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 6.6e-62 241.5 244 54.5
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 8.6e-62 241.1 240 53.8
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 1.5e-61 240.4 250 52.0
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 1.5e-61 240.4 230 56.5
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.5e-61 240.4 169 68.0
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 4.3e-61 238.8 239 51.9
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 3.6e-60 235.7 163 70.6
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 8.1e-60 234.6 242 53.3
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 3.1e-59 232.6 243 52.7
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 4.0e-59 232.3 175 64.0
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 8.9e-59 231.1 229 58.1
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.8e-58 228.4 163 67.5
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 5.8e-58 228.4 234 55.6
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.3e-57 227.3 147 74.8
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 1.1e-56 224.2 248 52.0
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.1e-56 224.2 187 58.8
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.9e-56 223.4 221 54.8
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.9e-56 223.4 172 64.5
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 3.2e-56 222.6 184 58.2
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 4.2e-56 222.2 238 52.9
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 4.2e-56 222.2 173 64.7
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 7.1e-56 221.5 239 53.6
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 8.7e-54 214.5 213 52.6
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.6e-52 210.3 225 55.6
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 2.1e-52 209.9 237 49.4
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.4e-51 207.2 162 66.0
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.2e-50 204.1 173 59.5
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.0e-46 191.0 132 67.4
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.4e-41 171.8 147 61.9
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 5.5e-40 168.7 112 70.5
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 9.3e-40 167.9 173 46.8
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 1.5e-34 150.6 106 66.0
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 1.3e-33 147.5 173 43.4
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 1.8e-30 137.1 150 50.7
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 8.7e-30 134.8 178 41.0
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 1.5e-29 134.0 151 44.4
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 3.7e-28 129.4 161 43.5
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.5e-24 115.5 76 71.1
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 4.5e-18 95.9 86 55.8
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 1.3e-17 94.4 154 35.1
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 6.1e-15 85.5 71 62.0
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 6.1e-15 85.5 71 62.0
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 5.1e-14 82.4 63 65.1
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 6.7e-14 82.0 87 44.8
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.1e-11 74.7 102 43.1
Aa31sc213G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.6e-07 60.8 56 67.9
BcaB06g26460 Brassica carinata HOM05D004405 ORTHO05D095050 1.6e-07 60.8 38 78.9


User provided reference genes

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