Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 7.4e-121 437.2 217 100.0
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 7.2e-108 394.0 229 88.2
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 1.0e-106 390.2 229 87.3
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 1.4e-106 389.8 229 87.8
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 1.4e-106 389.8 229 87.3
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 4.0e-106 388.3 229 86.0
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 5.2e-106 387.9 229 87.3
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 6.8e-106 387.5 229 85.6
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 6.8e-106 387.5 229 85.6
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 6.8e-106 387.5 229 85.6
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 6.8e-106 387.5 229 85.6
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 8.8e-106 387.1 229 85.6
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 2.0e-105 386.0 229 85.2
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 2.2e-104 382.5 229 84.7
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 8.3e-104 380.6 229 82.5
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 1.4e-103 379.8 238 82.4
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 2.4e-103 379.0 229 83.8
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 1.7e-101 372.9 256 76.6
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 1.2e-97 360.1 229 79.0
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 1.2e-97 360.1 229 79.0
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 1.5e-97 359.8 227 78.4
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 9.8e-97 357.1 229 78.2
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 9.8e-97 357.1 229 78.2
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 1.3e-96 356.7 229 78.6
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 1.3e-96 356.7 229 78.2
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 1.3e-96 356.7 229 78.2
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 1.3e-96 356.7 229 78.2
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 2.8e-96 355.5 229 77.7
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 4.9e-96 354.8 229 78.2
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 4.9e-96 354.8 227 76.7
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 6.3e-96 354.4 227 77.5
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 6.3e-96 354.4 227 76.7
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 6.3e-96 354.4 227 76.7
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 8.3e-96 354.0 229 77.3
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 8.3e-96 354.0 227 77.5
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 8.3e-96 354.0 229 77.7
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 1.4e-95 353.2 227 76.2
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 1.4e-95 353.2 227 77.1
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 1.8e-95 352.8 227 77.1
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 2.4e-95 352.4 227 77.5
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 3.1e-95 352.1 227 77.1
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 3.1e-95 352.1 227 77.5
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 7.0e-95 350.9 227 76.2
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 7.0e-95 350.9 227 77.1
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 7.0e-95 350.9 227 75.8
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 9.2e-95 350.5 227 76.7
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 9.2e-95 350.5 227 77.1
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 1.2e-94 350.1 227 76.2
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.6e-94 349.7 226 77.0
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 1.6e-94 349.7 226 77.0
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 1.6e-94 349.7 227 75.8
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 2.0e-94 349.4 227 77.1
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 2.0e-94 349.4 227 76.7
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 2.0e-94 349.4 227 76.7
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 2.7e-94 349.0 227 77.1
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 2.7e-94 349.0 227 75.3
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 2.7e-94 349.0 227 75.8
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 3.5e-94 348.6 227 74.4
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 3.5e-94 348.6 227 76.2
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 4.5e-94 348.2 227 76.7
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 4.5e-94 348.2 227 74.9
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 5.9e-94 347.8 226 76.5
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 5.9e-94 347.8 229 75.1
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 7.7e-94 347.4 227 76.7
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 7.7e-94 347.4 227 76.2
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 7.7e-94 347.4 229 74.2
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 7.7e-94 347.4 227 75.8
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 7.7e-94 347.4 229 74.7
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.0e-93 347.1 227 74.4
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.0e-93 347.1 227 77.1
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 1.3e-93 346.7 227 75.8
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 2.3e-93 345.9 227 74.0
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 2.3e-93 345.9 227 75.3
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 2.9e-93 345.5 227 75.3
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 3.8e-93 345.1 227 75.3
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 5.0e-93 344.7 227 74.4
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 5.0e-93 344.7 227 74.9
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 2.5e-92 342.4 227 74.4
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 2.5e-92 342.4 229 74.2
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 4.3e-92 341.7 229 73.4
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 7.3e-92 340.9 227 74.0
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.6e-91 339.7 227 73.1
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 4.7e-91 338.2 227 74.4
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 6.1e-91 337.8 229 73.8
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 1.0e-90 337.0 229 73.8
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 1.8e-90 336.3 227 74.9
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 2.3e-90 335.9 227 72.2
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 2.3e-90 335.9 229 71.6
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 4.0e-90 335.1 220 75.5
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 5.2e-90 334.7 227 72.7
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 6.8e-90 334.3 229 71.2
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 4.9e-88 328.2 227 74.0
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 4.1e-87 325.1 227 71.8
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 9.2e-87 323.9 226 70.4
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 1.6e-86 323.2 227 72.7
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 1.6e-86 323.2 226 70.8
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 4.6e-86 321.6 227 68.7
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 1.5e-84 316.6 227 69.6
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 1.8e-82 309.7 227 68.7
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 3.1e-82 308.9 211 73.0
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 2.0e-81 306.2 172 86.0
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 7.5e-81 304.3 227 67.4
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 2.2e-80 302.8 172 84.3
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 2.9e-80 302.4 172 84.3
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 2.9e-80 302.4 202 74.8
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 3.7e-80 302.0 227 64.8
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 4.9e-80 301.6 202 75.2
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 4.9e-80 301.6 172 83.7
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 6.4e-80 301.2 172 84.9
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 6.4e-80 301.2 202 74.3
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 8.3e-80 300.8 200 72.0
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 1.9e-79 299.7 200 74.0
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 2.4e-79 299.3 227 68.3
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 2.4e-79 299.3 172 84.3
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 1.2e-78 297.0 192 76.6
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.2e-78 297.0 226 65.0
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.2e-78 297.0 226 65.0
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 6.2e-75 284.6 226 62.8
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 6.2e-75 284.6 234 63.7
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 1.3e-72 276.9 230 63.9
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 1.1e-71 273.9 184 74.5
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 2.3e-69 266.2 227 61.7
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.1e-66 257.3 162 82.1
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 1.2e-65 253.8 167 75.4
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 3.4e-65 252.3 226 58.4
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.2e-62 243.8 162 77.2
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 3.0e-61 239.2 160 74.4
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 6.2e-59 231.5 356 41.9
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 3.6e-51 205.7 154 64.3
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 5.4e-47 191.8 131 74.0
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.9e-40 169.5 120 71.7
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 9.6e-28 127.9 69 89.9
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.6e-25 119.8 135 52.6
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 5.1e-21 105.5 62 72.6
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 2.5e-15 86.7 152 38.8
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 9.4e-15 84.7 45 88.9
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 2.7e-14 83.2 123 43.9
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 2.3e-13 80.1 81 50.6
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 2.6e-12 76.6 52 63.5
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 6.3e-11 72.0 64 54.7
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 7.2e-07 58.5 51 54.9
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 2.7e-06 56.6 82 43.9


User provided reference genes

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