Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17463 Brassica carinata HOM05D006090 ORTHO05D007600 1.5e-43 179.1 90 100.0
BcaC07g37170 Brassica carinata HOM05D006090 ORTHO05D007600 3.4e-43 177.9 90 98.9
C08p05430 Brassica napus HOM05D006090 ORTHO05D007600 3.4e-43 177.9 90 98.9
BolC8t47360H Brassica oleracea HOM05D006090 ORTHO05D007600 3.4e-43 177.9 90 98.9
Thhalv10011899m.g Eutrema salsugineum HOM05D006090 ORTHO05D007600 3.4e-43 177.9 90 98.9
CARHR037780 Cardamine hirsuta HOM05D006090 ORTHO05D007600 5.8e-43 177.2 90 97.8
BraA08t32537Z Brassica rapa HOM05D006090 ORTHO05D007600 7.5e-43 176.8 90 98.9
Sp1g35110 Schrenkiella parvula HOM05D006090 ORTHO05D007600 9.8e-43 176.4 90 97.8
AL1G54720 Arabidopsis lyrata HOM05D006090 ORTHO05D007600 2.2e-42 175.3 90 96.7
AT1G48140 Arabidopsis thaliana HOM05D006090 ORTHO05D007600 2.9e-42 174.9 90 95.6
A08p05190 Brassica napus HOM05D006090 ORTHO05D007600 4.9e-42 174.1 90 97.8
Carub.0001s3724 Capsella rubella HOM05D006090 ORTHO05D007600 6.4e-42 173.7 90 93.3
THA.LOC104802658 Tarenaya hassleriana HOM05D006090 ORTHO05D007600 6.0e-40 167.2 90 91.1
Aa31LG10G5590 Aethionema arabicum HOM05D006090 ORTHO05D007600 1.1e-38 162.9 97 86.6
MD05G1171700 Malus domestica HOM05D006090 ORTHO05D007600 1.5e-38 162.5 87 89.7
BcaC08g43006 Brassica carinata HOM05D006090 ORTHO05D007600 1.9e-38 162.2 91 89.0
C06p02550 Brassica napus HOM05D006090 ORTHO05D007600 1.9e-38 162.2 91 89.0
BolC6t35383H Brassica oleracea HOM05D006090 ORTHO05D007600 4.3e-38 161.0 91 89.0
MD10G1159900 Malus domestica HOM05D006090 ORTHO05D007600 9.5e-38 159.8 86 89.5
Prupe.8G199000 Prunus persica HOM05D006090 ORTHO05D007600 1.6e-37 159.1 87 85.1
Gohir.D07G205600 Gossypium hirsutum HOM05D006090 ORTHO05D007600 2.8e-37 158.3 90 81.1
Manes.06G087700 Manihot esculenta HOM05D006090 ORTHO05D007600 2.8e-37 158.3 90 84.4
Gohir.A07G199200 Gossypium hirsutum HOM05D006090 ORTHO05D007600 3.6e-37 157.9 90 82.2
Hma1.2p1_0052F.1_g030080 Hydrangea macrophylla HOM05D006090 ORTHO05D007600 3.6e-37 157.9 90 82.2
Gorai.001G231600 Gossypium raimondii HOM05D006090 ORTHO05D007600 4.7e-37 157.5 90 81.1
ECA248G3406 Erigeron canadensis HOM05D006090 ORTHO05D007600 1.4e-36 156.0 90 78.9
FvH4_2g18550 Fragaria vesca HOM05D006090 ORTHO05D007600 1.8e-36 155.6 87 83.9
FAN15G1212 Fragaria x ananassa HOM05D006090 ORTHO05D007600 1.8e-36 155.6 87 83.9
PGR044G2731 Punica granatum HOM05D006090 ORTHO05D007600 4.0e-36 154.5 90 82.2
RcHm_v2.0_Chr6g0284111 Rosa chinensis HOM05D006090 ORTHO05D007600 6.8e-36 153.7 87 81.6
Sp3g06170 Schrenkiella parvula HOM05D006090 ORTHO05D007600 8.9e-36 153.3 88 83.0
Aa31LG5G17800 Aethionema arabicum HOM05D006090 ORTHO05D007600 1.2e-35 152.9 90 82.2
CSS0021939 Camellia sinensis var. sinensis HOM05D006090 ORTHO05D007600 1.2e-35 152.9 88 78.4
Cc06_g17130 Coffea canephora HOM05D006090 ORTHO05D007600 1.2e-35 152.9 90 80.0
Nn8g41078 Nelumbo nucifera HOM05D006090 ORTHO05D007600 1.2e-35 152.9 90 80.0
Potri.002G245800 Populus trichocarpa HOM05D006090 ORTHO05D007600 1.2e-35 152.9 90 82.2
Thecc.02G015400 Theobroma cacao HOM05D006090 ORTHO05D007600 1.2e-35 152.9 90 81.1
Dinv19173 Davidia involucrata HOM05D006090 ORTHO05D007600 2.0e-35 152.1 90 78.9
TWI18G0803 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 2.0e-35 152.1 90 81.1
BcaB07g33788 Brassica carinata HOM05D006090 ORTHO05D007600 2.6e-35 151.8 94 83.0
HanXRQChr01g0015271 Helianthus annuus HOM05D006090 ORTHO05D007600 5.8e-35 150.6 90 77.8
Duzib211G0047 Durio zibethinus HOM05D006090 ORTHO05D007600 1.3e-34 149.4 87 80.5
Duzib211G0371 Durio zibethinus HOM05D006090 ORTHO05D007600 1.3e-34 149.4 87 80.5
CANSAT21G0941 Cannabis sativa HOM05D006090 ORTHO05D007600 1.7e-34 149.1 87 81.6
Thecc.01G220300 Theobroma cacao HOM05D006090 ORTHO05D007600 1.7e-34 149.1 87 81.6
vmacro14732 Vaccinium macrocarpon HOM05D006090 ORTHO05D007600 1.7e-34 149.1 87 79.3
BcaB04g21317 Brassica carinata HOM05D006090 ORTHO05D007600 2.2e-34 148.7 88 80.7
MBI04_g03342_MAGBIO Magnolia biondii HOM05D006090 ORTHO05D007600 2.2e-34 148.7 90 76.7
Rhsim01G0252800 Rhododendron simsii HOM05D006090 ORTHO05D007600 2.9e-34 148.3 90 77.8
Lsat_1_v5_gn_8_5041 Lactuca sativa HOM05D006090 ORTHO05D007600 3.7e-34 147.9 90 77.8
Oeu051534.1 Olea europaea HOM05D006090 ORTHO05D007600 6.4e-34 147.1 90 76.7
PSO170G6116 Papaver somniferum HOM05D006090 ORTHO05D007600 6.4e-34 147.1 90 76.7
BNapus_Darmor_BZH_scaffold_109p00180 Brassica napus HOM05D006090 ORTHO05D007600 8.3e-34 146.7 88 81.8
PSO445G0009 Papaver somniferum HOM05D006090 ORTHO05D007600 8.3e-34 146.7 90 76.7
TAR362G1026 Trochodendron aralioides HOM05D006090 ORTHO05D007600 1.1e-33 146.4 90 75.6
CiPaw.01G050400 Carya illinoinensis HOM05D006090 ORTHO05D007600 1.4e-33 146.0 90 80.0
Medtr7g056250 Medicago truncatula HOM05D006090 ORTHO05D007600 1.4e-33 146.0 90 75.6
TWI36G1609 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 1.4e-33 146.0 88 78.4
FAN24G0022 Fragaria x ananassa HOM05D006090 ORTHO05D007600 1.9e-33 145.6 100 72.0
SalBow6G1264 Salvia bowleyana HOM05D006090 ORTHO05D007600 1.9e-33 145.6 90 73.3
SalBow6G7055 Salvia bowleyana HOM05D006090 ORTHO05D007600 1.9e-33 145.6 90 73.3
EL10Ac7g17901 Beta vulgaris HOM05D006090 ORTHO05D007600 2.4e-33 145.2 90 75.6
Glyma.08G349000 Glycine max HOM05D006090 ORTHO05D007600 2.4e-33 145.2 90 75.6
Psat3g148760 Pisum sativum HOM05D006090 ORTHO05D007600 2.4e-33 145.2 90 75.6
Atru.chr6.1016 Acer truncatum HOM05D006090 ORTHO05D007600 3.2e-33 144.8 89 73.0
Solyc01g005110.3 Solanum lycopersicum HOM05D006090 ORTHO05D007600 3.2e-33 144.8 90 74.4
Sopen01g001130 Solanum pennellii HOM05D006090 ORTHO05D007600 3.2e-33 144.8 90 74.4
Hma1.2p1_0226F.1_g095400 Hydrangea macrophylla HOM05D006090 ORTHO05D007600 5.4e-33 144.1 90 75.6
Lsat_1_v5_gn_5_180801 Lactuca sativa HOM05D006090 ORTHO05D007600 5.4e-33 144.1 84 78.6
TPR.G6479 Trifolium pratense HOM05D006090 ORTHO05D007600 5.4e-33 144.1 90 72.2
ClCG10G009020 Citrullus lanatus HOM05D006090 ORTHO05D007600 9.2e-33 143.3 90 74.4
Migut.N03342 Erythranthe guttata HOM05D006090 ORTHO05D007600 1.2e-32 142.9 90 73.3
Ca_06547_v3 Cicer arietinum L. HOM05D006090 ORTHO05D007600 1.6e-32 142.5 90 72.2
QL02p097583 Quercus lobata HOM05D006090 ORTHO05D007600 2.1e-32 142.1 89 76.4
CAN.G282.104 Capsicum annuum HOM05D006090 ORTHO05D007600 2.7e-32 141.7 90 73.3
Sed0025432 Sechium edule HOM05D006090 ORTHO05D007600 2.7e-32 141.7 90 73.3
TWI75G0179 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 3.5e-32 141.4 90 76.7
QL09p032732 Quercus lobata HOM05D006090 ORTHO05D007600 4.6e-32 141.0 89 76.4
CAN.G151.21 Capsicum annuum HOM05D006090 ORTHO05D007600 6.0e-32 140.6 90 74.4
Lalb_Chr03g0041481 Lupinus albus HOM05D006090 ORTHO05D007600 6.0e-32 140.6 88 73.9
Peaxi162Scf01111g00025 Petunia axillaris HOM05D006090 ORTHO05D007600 6.0e-32 140.6 90 74.4
Lj5g0019908 Lotus japonicus HOM05D006090 ORTHO05D007600 7.8e-32 140.2 88 72.7
Os02g0749450 Oryza sativa ssp. japonica HOM05D006090 ORTHO05D007600 7.8e-32 140.2 90 75.6
Lj1g0010865 Lotus japonicus HOM05D006090 ORTHO05D007600 1.0e-31 139.8 88 71.6
PGR004G1711 Punica granatum HOM05D006090 ORTHO05D007600 1.0e-31 139.8 89 74.2
Phvul.002G080700 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 1.7e-31 139.0 86 74.4
Nitab4.5_0014260g0010 Nicotiana tabacum HOM05D006090 ORTHO05D007600 2.3e-31 138.7 90 72.2
GSVIVG01028416001 Vitis vinifera HOM05D006090 ORTHO05D007600 3.0e-31 138.3 88 75.0
Nitab4.5_0000521g0090 Nicotiana tabacum HOM05D006090 ORTHO05D007600 5.1e-31 137.5 90 71.1
Sed0016973 Sechium edule HOM05D006090 ORTHO05D007600 5.1e-31 137.5 86 75.6
Eucgr.A02241 Eucalyptus grandis HOM05D006090 ORTHO05D007600 8.6e-31 136.7 90 71.1
CDE09G0476 Ceratophyllum demersum HOM05D006090 ORTHO05D007600 2.5e-30 135.2 90 67.8
Phvul.002G081100 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 2.5e-30 135.2 90 72.2
Zm00001eb059180 Zea mays HOM05D006090 ORTHO05D007600 2.5e-30 135.2 90 73.3
Cpa.g.sc71.6 Carica papaya HOM05D006090 ORTHO05D007600 7.3e-30 133.7 84 77.4
Ciclev10023078m.g Citrus clementina HOM05D006090 ORTHO05D007600 1.8e-28 129.0 76 77.6
arahy.Tifrunner.gnm1.ann1.7I8V6Q Arachis hypogaea HOM05D006090 ORTHO05D007600 3.1e-28 128.3 86 72.1
arahy.Tifrunner.gnm1.ann1.NKLH1V Arachis hypogaea HOM05D006090 ORTHO05D007600 4.0e-28 127.9 86 70.9
unitig_8.g4837 Utricularia gibba HOM05D006090 ORTHO05D007600 1.5e-27 125.9 90 67.8
PGSC0003DMG400022770 Solanum tuberosum HOM05D006090 ORTHO05D007600 2.0e-27 125.6 124 54.0
Cpa.g.sc428.3 Carica papaya HOM05D006090 ORTHO05D007600 3.4e-27 124.8 70 82.9
Duzib138G1257 Durio zibethinus HOM05D006090 ORTHO05D007600 5.8e-27 124.0 69 82.6
Medtr3g437420 Medicago truncatula HOM05D006090 ORTHO05D007600 5.8e-27 124.0 70 81.4
BraA01t04392Z Brassica rapa HOM05D006090 ORTHO05D007600 9.9e-27 123.2 88 73.9
Haze_03967 Corylus avellana HOM05D006090 ORTHO05D007600 1.3e-26 122.9 97 62.9
HPP92_023706 Vanilla planifolia HOM05D006090 ORTHO05D007600 1.7e-26 122.5 87 66.7
MELO3C026729.2 Cucumis melo HOM05D006090 ORTHO05D007600 2.4e-25 118.6 70 80.0
Actinidia30052 Actinidia chinensis HOM05D006090 ORTHO05D007600 3.5e-24 114.8 68 77.9
Rhsim13G0047700 Rhododendron simsii HOM05D006090 ORTHO05D007600 4.6e-24 114.4 71 78.9
Lj2C1126T3 Lonicera japonica HOM05D006090 ORTHO05D007600 6.0e-24 114.0 63 82.5
Phvul.009G016400 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 6.6e-23 110.5 66 77.3
Eucgr.K03282 Eucalyptus grandis HOM05D006090 ORTHO05D007600 1.1e-20 103.2 57 86.0
Sabra02G0187100 Salix brachista HOM05D006090 ORTHO05D007600 1.8e-20 102.4 60 76.7
CDE02G0014 Ceratophyllum demersum HOM05D006090 ORTHO05D007600 1.2e-19 99.8 69 63.8
CiPaw.02G023500 Carya illinoinensis HOM05D006090 ORTHO05D007600 2.6e-19 98.6 71 71.8
Haze_15253 Corylus avellana HOM05D006090 ORTHO05D007600 4.4e-19 97.8 86 60.5
Glyma.18G167500 Glycine max HOM05D006090 ORTHO05D007600 5.8e-19 97.4 58 79.3
Mapoly0057s0028 Marchantia polymorpha HOM05D006090 ORTHO05D007600 1.4e-17 92.8 89 53.9
TAR633G0277 Trochodendron aralioides HOM05D006090 ORTHO05D007600 1.0e-15 86.7 51 78.4
Pp3c20_9690 Physcomitrium patens HOM05D006090 ORTHO05D007600 3.0e-15 85.1 93 48.4
AagrBONN_evm.TU.Sc2ySwM_228.829 Anthoceros agrestis HOM05D006090 ORTHO05D007600 1.4e-12 76.3 90 47.8
arahy.Tifrunner.gnm1.ann1.L6G805 Arachis hypogaea HOM05D006090 ORTHO05D007600 6.4e-10 67.4 53 60.4
Nitab4.5_0001873g0080 Nicotiana tabacum HOM05D006090 ORTHO05D007600 6.4e-10 67.4 47 66.0
Carub.0003s0674 Capsella rubella HOM05D006090 ORTHO05D007600 1.0e-07 60.1 35 80.0
Aa31LG11G3540 Aethionema arabicum HOM05D006090 ORTHO05D007600 3.9e-07 58.2 34 73.5
AL3G18490 Arabidopsis lyrata HOM05D006090 ORTHO05D007600 6.6e-07 57.4 40 67.5
arahy.Tifrunner.gnm1.ann1.DI5ISS Arachis hypogaea HOM05D006090 ORTHO05D038896 6.6e-07 57.4 41 68.3
AUR62016546 Chenopodium quinoa HOM05D006090 ORTHO05D007600 8.7e-07 57.0 51 54.9
arahy.Tifrunner.gnm1.ann1.3U8U6D Arachis hypogaea HOM05D054567 ORTHO05D007600 2.5e-06 55.5 33 72.7


User provided reference genes

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