Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17410 Brassica carinata HOM05D003554 ORTHO05D005130 2.5e-181 638.6 323 100.0
BcaB02g11541 Brassica carinata HOM05D003554 ORTHO05D005130 1.8e-155 552.7 324 88.9
BcaB03g16128 Brassica carinata HOM05D003554 ORTHO05D005130 8.7e-150 533.9 312 90.7
BcaB01g01280 Brassica carinata HOM05D003554 ORTHO05D005130 2.9e-145 518.8 312 87.5
BcaB08g35293 Brassica carinata HOM05D003554 ORTHO05D005130 3.7e-140 501.9 322 83.2
BcaC03g16254 Brassica carinata HOM05D003554 ORTHO05D005130 4.8e-124 448.4 320 77.5
BcaB05g23503 Brassica carinata HOM05D003554 ORTHO05D008395 5.8e-69 265.4 152 88.2
BcaB02g11090 Brassica carinata HOM05D003554 ORTHO05D008395 1.2e-58 231.1 142 86.6
Carub.0007s3074 Capsella rubella HOM05D003554 ORTHO05D005130 2.1e-55 220.3 286 43.4
Carub.0002s1014 Capsella rubella HOM05D003554 ORTHO05D005130 4.2e-43 179.5 280 38.6
Carub.0002s1016 Capsella rubella HOM05D003554 ORTHO05D005130 2.1e-39 167.2 210 44.3
Carub.0001s3566 Capsella rubella HOM05D003554 ORTHO05D005130 2.8e-39 166.8 299 38.1
Carub.0004s0685 Capsella rubella HOM05D003554 ORTHO05D005130 4.8e-39 166.0 300 35.3
C02p33250 Brassica napus HOM05D003554 ORTHO05D005130 6.2e-39 165.6 211 44.1
Carub.0006s2609 Capsella rubella HOM05D003554 ORTHO05D005130 1.8e-38 164.1 283 37.8
Carub.0002s0995 Capsella rubella HOM05D003554 ORTHO05D005130 1.2e-37 161.4 279 38.0
Carub.0007s0014 Capsella rubella HOM05D003554 ORTHO05D005130 1.5e-37 161.0 283 37.8
Aa31sc111G40 Aethionema arabicum HOM05D003554 ORTHO05D005130 4.5e-37 159.5 281 36.3
Carub.0278s0001 Capsella rubella HOM05D003554 ORTHO05D005130 1.7e-36 157.5 297 35.7
Carub.0002s0983 Capsella rubella HOM05D003554 ORTHO05D005130 3.8e-36 156.4 217 43.3
Carub.0093s0002 Capsella rubella HOM05D003554 ORTHO05D005130 1.1e-35 154.8 244 38.9
Aa31LG10G9040 Aethionema arabicum HOM05D003554 ORTHO05D005130 2.4e-35 153.7 272 35.7
Carub.0002s0984 Capsella rubella HOM05D003554 ORTHO05D005130 1.2e-34 151.4 212 42.9
BcaB06g26180 Brassica carinata HOM05D009532 ORTHO05D005130 2.3e-33 147.1 218 39.0
BraA03t14882Z Brassica rapa HOM05D004128 ORTHO05D008395 2.1e-31 140.6 310 33.9
C05p37400 Brassica napus HOM05D003554 ORTHO05D005130 6.2e-31 139.0 214 40.2
Aa31sc129G60 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.1e-30 138.3 283 34.6
BcaB07g33411 Brassica carinata HOM05D003554 ORTHO05D008395 1.2e-29 134.8 90 86.7
C07p33860 Brassica napus HOM05D004128 ORTHO05D008395 1.2e-29 134.8 310 33.5
Carub.0003s3367 Capsella rubella HOM05D003554 ORTHO05D005130 2.6e-29 133.7 287 33.8
BcaB08g35337 Brassica carinata HOM05D003554 ORTHO05D005130 5.8e-29 132.5 279 36.6
AL1G56530 Arabidopsis lyrata HOM05D003554 ORTHO05D005130 8.4e-28 128.6 210 35.7
AL1G56540 Arabidopsis lyrata HOM05D003554 ORTHO05D005130 8.4e-28 128.6 210 35.7
BcaC08g42899 Brassica carinata HOM05D003554 ORTHO05D005130 1.1e-27 128.3 285 32.6
Carub.0003s2756 Capsella rubella HOM05D003554 ORTHO05D005130 7.1e-27 125.6 282 34.4
BolC8t47837H Brassica oleracea HOM05D004128 ORTHO05D008395 1.6e-26 124.4 268 34.0
BolC9t56577H Brassica oleracea HOM05D004128 ORTHO05D008395 2.1e-26 124.0 172 44.2
BcaB08g35391 Brassica carinata HOM05D003554 ORTHO05D005130 2.3e-25 120.6 284 31.0
BolC3t19531H Brassica oleracea HOM05D003554 ORTHO05D005130 2.3e-25 120.6 140 45.0
BolC2t07285H Brassica oleracea HOM05D004128 ORTHO05D008395 1.9e-24 117.5 215 34.4
BcaB07g31822 Brassica carinata HOM05D003554 ORTHO05D032345 3.3e-24 116.7 280 29.3
BcaB01g02862 Brassica carinata HOM05D003554 ORTHO05D005130 9.6e-24 115.2 254 31.9
BcaB02g10637 Brassica carinata HOM05D003554 ORTHO05D005130 9.6e-24 115.2 187 36.4
BcaB02g11366 Brassica carinata HOM05D007984 ORTHO05D013027 1.3e-23 114.8 277 34.7
BraA10t42724Z Brassica rapa HOM05D004128 ORTHO05D008395 6.2e-23 112.5 215 34.0
BcaB04g17902 Brassica carinata HOM05D003554 ORTHO05D005130 8.2e-23 112.1 141 44.7
BraA07t30708Z Brassica rapa HOM05D004128 ORTHO05D008395 1.8e-22 110.9 253 31.2
C04p26230 Brassica napus HOM05D004128 ORTHO05D008395 3.1e-22 110.2 151 43.7
BolC4t24183H Brassica oleracea HOM05D004128 ORTHO05D008395 3.1e-22 110.2 151 43.7
BolC8t50772H Brassica oleracea HOM05D004128 ORTHO05D008395 4.0e-22 109.8 259 32.0
Aa31sc347G20 Aethionema arabicum HOM05D003554 ORTHO05D005130 5.3e-22 109.4 191 37.2
Aa31LG6G10050 Aethionema arabicum HOM05D003554 ORTHO05D005130 9.0e-22 108.6 286 30.1
AL2G17330 Arabidopsis lyrata HOM05D003554 ORTHO05D008395 2.0e-21 107.5 281 29.5
BcaNung01161 Brassica carinata HOM05D007203 ORTHO05D011558 2.6e-21 107.1 140 42.1
BolC9t55613H Brassica oleracea HOM05D004128 ORTHO05D008395 4.5e-21 106.3 215 32.6
BolC6t38472H Brassica oleracea HOM05D004128 ORTHO05D008395 1.7e-20 104.4 215 33.0
Aa31sc454G20 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.1e-19 101.7 140 42.9
AT5G24275 Arabidopsis thaliana HOM05D001081 ORTHO05D004708 2.5e-19 100.5 172 38.4
Aa31LG6G9970 Aethionema arabicum HOM05D003554 ORTHO05D005130 4.2e-19 99.8 303 29.0
C04p23890 Brassica napus HOM05D004128 ORTHO05D008395 4.2e-19 99.8 215 31.6
Aa31LG11G8070 Aethionema arabicum HOM05D003554 ORTHO05D005130 7.1e-19 99.0 188 35.6
C06p01800 Brassica napus HOM05D004128 ORTHO05D008395 7.1e-19 99.0 215 31.2
BolC3t13324H Brassica oleracea HOM05D003554 ORTHO05D008395 7.1e-19 99.0 187 33.7
Aa31LG1G6440 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.0e-17 95.1 212 31.6
Aa31LG6G9990 Aethionema arabicum HOM05D003554 ORTHO05D005130 3.9e-17 93.2 124 41.9
Aa31LG10G9030 Aethionema arabicum HOM05D003554 ORTHO05D008395 5.1e-17 92.8 229 32.8
BcaB06g26193 Brassica carinata HOM05D003554 ORTHO05D014926 8.7e-17 92.0 201 36.8
Aa31sc538G10 Aethionema arabicum HOM05D003554 ORTHO05D008395 3.3e-16 90.1 153 38.6
C09p52720 Brassica napus HOM05D004128 ORTHO05D008395 3.3e-16 90.1 138 37.0
BcaB07g32749 Brassica carinata HOM05D008316 ORTHO05D013031 4.3e-16 89.7 239 31.4
Thhalv10000512m.g Eutrema salsugineum HOM05D003554 ORTHO05D005130 5.7e-16 89.4 82 52.4
BcaC08g42812 Brassica carinata HOM05D008825 ORTHO05D013031 7.4e-16 89.0 239 31.8
BcaB01g01318 Brassica carinata HOM05D004128 ORTHO05D008395 1.6e-15 87.8 135 40.7
C03p49780 Brassica napus HOM05D004128 ORTHO05D008395 2.2e-15 87.4 138 36.2
BraA05t20993Z Brassica rapa HOM05D004128 ORTHO05D008395 8.2e-15 85.5 166 35.5
BcaB03g16118 Brassica carinata HOM05D003554 ORTHO05D005130 1.1e-14 85.1 148 37.2
THA.LOC109116563 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.8e-14 84.3 279 26.5
BcaB01g01146 Brassica carinata HOM05D003554 ORTHO05D005130 4.1e-14 83.2 291 25.4
BcaC01g01745 Brassica carinata HOM05D003554 ORTHO05D014926 5.3e-14 82.8 200 33.0
BcaC05g27750 Brassica carinata HOM05D008825 ORTHO05D013031 5.3e-14 82.8 211 33.2
AT2G06420 Arabidopsis thaliana HOM05D003554 ORTHO05D005130 6.9e-14 82.4 87 47.1
C01p27640 Brassica napus HOM05D004128 ORTHO05D008395 9.0e-14 82.0 206 30.1
CARHR049310 Cardamine hirsuta HOM05D003554 ORTHO05D005130 9.0e-14 82.0 71 52.1
C07p34800 Brassica napus HOM05D004128 ORTHO05D008395 5.9e-13 79.3 219 31.5
THA.LOC104803192 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 5.9e-13 79.3 213 27.7
BcaC04g20884 Brassica carinata HOM05D009532 ORTHO05D013511 1.7e-12 77.8 185 32.4
THA.LOC109117170 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.7e-12 77.8 212 29.7
BcaC01g02197 Brassica carinata HOM05D003554 ORTHO05D014926 2.9e-12 77.0 199 32.7
C02p14940 Brassica napus HOM05D008316 ORTHO05D021631 5.0e-12 76.3 108 37.0
BcaB02g11054 Brassica carinata HOM05D009532 ORTHO05D005130 8.5e-12 75.5 159 35.2
BcaC08g43125 Brassica carinata HOM05D009532 ORTHO05D013511 1.4e-11 74.7 186 33.3
BNapus_Darmor_BZH_scaffold_167p00060 Brassica napus HOM05D003554 ORTHO05D005130 1.4e-11 74.7 84 46.4
Aa31sc182G60 Aethionema arabicum HOM05D003554 ORTHO05D008395 1.9e-11 74.3 193 31.1
Sp7g02635 Schrenkiella parvula HOM05D003554 ORTHO05D005130 2.5e-11 73.9 47 66.0
C01p25840 Brassica napus HOM05D004128 ORTHO05D008395 3.2e-11 73.6 219 29.2
Carub.0005s0863 Capsella rubella HOM05D003554 ORTHO05D005130 7.2e-11 72.4 72 47.2
THA.LOC104811336 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 9.4e-11 72.0 198 27.8
BcaB03g16082 Brassica carinata HOM05D026233 ORTHO05D005130 1.2e-10 71.6 125 36.0
C03p67190 Brassica napus HOM05D003554 ORTHO05D005130 1.2e-10 71.6 87 41.4
C06p00220 Brassica napus HOM05D003554 ORTHO05D005130 1.2e-10 71.6 87 41.4
BolC5t32273H Brassica oleracea HOM05D003554 ORTHO05D005130 1.2e-10 71.6 87 41.4
THA.LOC104807874 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.1e-10 70.9 197 27.9
BcaC01g00316 Brassica carinata HOM05D003554 ORTHO05D014926 2.7e-10 70.5 197 32.5
C05p06190 Brassica napus HOM05D003554 ORTHO05D005130 2.7e-10 70.5 84 45.2
A07p06510 Brassica napus HOM05D003554 ORTHO05D005130 6.1e-10 69.3 87 39.1
Aa31sc318G10 Aethionema arabicum HOM05D028239 ORTHO05D005130 1.0e-09 68.6 103 35.9
BcaC01g04710 Brassica carinata HOM05D008825 ORTHO05D013031 1.4e-09 68.2 207 30.0
BcaC08g45909 Brassica carinata HOM05D003554 ORTHO05D014926 1.4e-09 68.2 195 31.3
BcaB05g24479 Brassica carinata HOM05D008316 ORTHO05D017243 1.8e-09 67.8 279 29.4
BolC3t18729H Brassica oleracea HOM05D004128 ORTHO05D008395 1.8e-09 67.8 97 37.1
BraA07t28446Z Brassica rapa HOM05D003554 ORTHO05D005130 2.3e-09 67.4 87 39.1
C04p39160 Brassica napus HOM05D004128 ORTHO05D008395 3.0e-09 67.0 139 33.1
BcaC08g45828 Brassica carinata HOM05D003554 ORTHO05D014926 3.9e-09 66.6 123 35.8
BolC4t27914H Brassica oleracea HOM05D008062 ORTHO05D008395 6.7e-09 65.9 98 37.8
THA.LOC109116427 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 6.7e-09 65.9 210 28.1
BcaB02g10972 Brassica carinata HOM05D003554 ORTHO05D014926 1.1e-08 65.1 160 32.5
A02p27360 Brassica napus HOM05D011584 ORTHO05D016702 1.9e-08 64.3 44 81.8
BraA02t07764Z Brassica rapa HOM05D011584 ORTHO05D016702 1.9e-08 64.3 44 81.8
Aa31LG9G11090 Aethionema arabicum HOM05D011111 ORTHO05D001112 2.5e-08 63.9 84 42.9
BcaC03g13667 Brassica carinata HOM05D007984 ORTHO05D039917 3.3e-08 63.5 199 32.7
C02p57980 Brassica napus HOM05D017905 ORTHO05D017243 3.3e-08 63.5 127 33.9
BolC2t10066H Brassica oleracea HOM05D011584 ORTHO05D016702 3.3e-08 63.5 43 81.4
THA.LOC104799670 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 7.4e-08 62.4 177 28.8
Aa31sc471G30 Aethionema arabicum HOM05D003554 ORTHO05D005130 9.7e-08 62.0 106 35.8
BolC3t17148H Brassica oleracea HOM05D014471 ORTHO05D017646 9.7e-08 62.0 102 43.1
C08p07220 Brassica napus HOM05D008316 ORTHO05D017243 1.7e-07 61.2 88 39.8
Sp6g09630 Schrenkiella parvula HOM05D004128 ORTHO05D008395 2.8e-07 60.5 152 28.3
Aa31LG5G24000 Aethionema arabicum HOM05D003554 ORTHO05D005130 3.7e-07 60.1 51 52.9
Aa31LG7G10730 Aethionema arabicum HOM05D003554 ORTHO05D008395 4.8e-07 59.7 123 36.6
C08p21910 Brassica napus HOM05D004128 ORTHO05D008395 6.3e-07 59.3 185 29.2
BraA08t33244Z Brassica rapa HOM05D004128 ORTHO05D008395 1.4e-06 58.2 185 29.7
BcaB02g11423 Brassica carinata HOM05D003554 ORTHO05D014926 1.8e-06 57.8 101 37.6
BraA09t38864Z Brassica rapa HOM05D003554 ORTHO05D017243 1.8e-06 57.8 71 43.7
C08p06800 Brassica napus HOM05D003554 ORTHO05D005130 2.4e-06 57.4 81 38.3
BolC6t37871H Brassica oleracea HOM05D004128 ORTHO05D008395 2.4e-06 57.4 185 29.2
THA.LOC104807807 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 4.1e-06 56.6 123 31.7
C02p40540 Brassica napus HOM05D007984 ORTHO05D014515 5.3e-06 56.2 247 28.3
C03p60470 Brassica napus HOM05D004128 ORTHO05D008395 6.9e-06 55.8 185 29.2
THA.LOC104798881 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 6.9e-06 55.8 117 29.9
Aa31sc45G30 Aethionema arabicum HOM05D003554 ORTHO05D005130 9.1e-06 55.5 63 42.9
THA.LOC104820187 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 9.1e-06 55.5 170 27.1


User provided reference genes

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