Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 3.9e-116 421.4 200 100.0
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 3.1e-89 332.0 201 83.6
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 3.1e-89 332.0 201 83.6
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 1.3e-87 326.6 200 82.0
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 5.0e-87 324.7 200 81.0
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 8.5e-87 323.9 200 80.5
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 1.1e-86 323.6 201 82.1
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 9.3e-86 320.5 202 80.2
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 3.9e-84 315.1 205 77.6
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 1.8e-81 306.2 201 77.6
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 1.2e-72 276.9 197 71.1
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 1.6e-61 240.0 166 77.1
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 1.5e-59 233.4 202 62.4
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 9.7e-59 230.7 191 64.4
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 9.7e-59 230.7 216 57.4
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 2.2e-58 229.6 205 60.5
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 3.7e-58 228.8 201 60.7
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 3.7e-58 228.8 211 58.8
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 8.2e-58 227.6 205 58.0
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 1.1e-57 227.3 203 61.6
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 1.1e-57 227.3 202 61.4
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 1.4e-57 226.9 203 61.6
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 1.8e-57 226.5 199 60.8
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 1.8e-57 226.5 193 61.1
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 1.8e-57 226.5 203 59.1
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 2.4e-57 226.1 205 59.5
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 2.4e-57 226.1 206 58.7
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 3.1e-57 225.7 205 58.0
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 3.1e-57 225.7 194 61.9
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 4.1e-57 225.3 206 58.7
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 4.1e-57 225.3 194 61.9
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 4.1e-57 225.3 194 61.9
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 5.3e-57 224.9 205 57.6
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 7.0e-57 224.6 196 57.7
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 2.7e-56 222.6 204 58.3
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 2.7e-56 222.6 200 58.0
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 3.5e-56 222.2 215 54.9
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 4.5e-56 221.9 206 57.8
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 7.7e-56 221.1 204 57.8
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 7.7e-56 221.1 201 58.7
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 2.2e-55 219.5 207 58.5
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 2.2e-55 219.5 203 57.1
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 2.2e-55 219.5 201 57.2
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 2.9e-55 219.2 206 57.3
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 6.5e-55 218.0 205 56.1
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 6.5e-55 218.0 203 56.2
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 8.5e-55 217.6 206 56.8
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 1.1e-54 217.2 201 56.2
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 2.5e-54 216.1 208 57.2
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 4.2e-54 215.3 200 56.5
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 4.2e-54 215.3 208 55.8
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 4.2e-54 215.3 206 58.7
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 1.2e-53 213.8 199 56.3
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 2.7e-53 212.6 213 54.0
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 3.6e-53 212.2 193 57.5
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 6.1e-53 211.5 210 55.2
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 6.1e-53 211.5 209 52.2
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 1.0e-52 210.7 256 49.2
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 2.3e-52 209.5 208 55.3
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 8.8e-52 207.6 196 55.6
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 1.2e-51 207.2 238 52.1
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 1.5e-51 206.8 206 53.9
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 1.5e-51 206.8 202 56.4
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 2.6e-51 206.1 203 54.7
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 3.4e-51 205.7 203 56.2
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 4.4e-51 205.3 238 51.7
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 5.7e-51 204.9 204 55.9
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 5.7e-51 204.9 276 45.7
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 2.2e-50 203.0 204 54.9
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 2.8e-50 202.6 201 54.2
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 3.7e-50 202.2 197 53.3
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 8.3e-50 201.1 197 54.8
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 8.3e-50 201.1 196 54.1
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 1.1e-49 200.7 133 73.7
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 4.1e-49 198.7 193 52.8
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 4.1e-49 198.7 199 53.3
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 5.4e-49 198.4 200 51.5
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 5.4e-49 198.4 192 53.1
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 7.0e-49 198.0 207 53.1
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 2.7e-48 196.1 201 53.2
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 2.7e-48 196.1 160 61.2
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 3.5e-48 195.7 264 46.2
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 5.9e-48 194.9 132 72.0
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 3.8e-47 192.2 133 69.9
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 1.5e-46 190.3 129 70.5
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 3.3e-46 189.1 200 52.5
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 9.5e-46 187.6 182 57.7
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 4.7e-45 185.3 128 70.3
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 1.0e-44 184.1 131 67.9
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 1.5e-43 180.3 201 49.8
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 5.7e-43 178.3 202 50.0
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 9.8e-43 177.6 130 62.3
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 2.4e-41 172.9 206 45.6
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 3.1e-41 172.6 209 43.5
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 2.0e-40 169.9 133 64.7
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 1.7e-39 166.8 204 46.6
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 2.3e-39 166.4 131 58.0
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 4.3e-38 162.2 203 49.8
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 1.2e-35 154.1 126 61.1
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 1.5e-35 153.7 124 60.5
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 3.4e-35 152.5 234 39.3
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 3.7e-34 149.1 170 52.4
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 6.4e-34 148.3 171 45.6
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 1.4e-33 147.1 129 50.4
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 4.1e-33 145.6 257 37.4
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 5.4e-33 145.2 168 51.2
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 4.6e-32 142.1 103 66.0
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 6.0e-32 141.7 129 51.2
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 1.3e-31 140.6 198 42.9
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 5.0e-31 138.7 118 65.3
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 4.3e-30 135.6 199 41.7
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 1.4e-28 130.6 125 56.8
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 2.6e-27 126.3 114 63.2
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 1.7e-26 123.6 165 46.1
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 2.4e-25 119.8 62 80.6
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 4.1e-25 119.0 164 45.7
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 9.2e-25 117.9 62 75.8
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 1.3e-23 114.0 125 50.4
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 2.5e-22 109.8 112 48.2
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 1.6e-21 107.1 121 38.8
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 3.6e-21 105.9 110 55.5
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 1.8e-20 103.6 112 52.7
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 1.2e-19 100.9 145 42.8
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 4.4e-19 99.0 74 59.5
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 5.8e-19 98.6 116 39.7
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 2.9e-18 96.3 117 48.7
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 8.3e-18 94.7 119 41.2
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 2.4e-17 93.2 107 45.8
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 4.1e-17 92.4 120 40.8
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 2.3e-15 86.7 114 41.2
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 8.6e-15 84.7 73 61.6
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 3.3e-14 82.8 118 41.5
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 3.3e-14 82.8 36 97.2
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 3.3e-14 82.8 36 97.2
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 1.2e-13 80.9 103 37.9
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 3.1e-12 76.3 93 46.2
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 2.0e-11 73.6 85 48.2
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 1.7e-10 70.5 46 63.0
SHI05088 Sapria himalayana HOM05D005520 ORTHO05D006633 2.3e-07 60.1 120 38.3
Atru.chr9.1169 Acer truncatum HOM05D003028 ORTHO05D037933 7.3e-06 55.1 29 79.3


User provided reference genes

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