Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 8.9e-193 677.2 451 100.0
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 4.9e-167 591.7 457 87.5
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 1.0e-164 583.9 457 88.2
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 8.7e-164 580.9 456 83.3
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 4.3e-163 578.6 455 82.9
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 1.6e-162 576.6 456 82.9
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 6.3e-130 468.4 480 71.7
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 3.8e-127 459.1 506 67.4
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 3.2e-126 456.1 491 63.7
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 7.2e-126 454.9 502 66.5
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 5.7e-123 445.3 493 61.9
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 4.5e-120 435.6 488 66.2
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 1.9e-118 430.3 481 71.1
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 8.2e-114 414.8 434 67.3
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 7.4e-107 391.7 433 67.2
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 8.2e-106 388.3 452 59.7
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 9.1e-105 384.8 452 63.9
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 7.2e-102 375.2 452 64.4
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 1.6e-101 374.0 452 64.4
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 7.0e-65 252.3 461 41.4
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 2.9e-58 230.3 505 39.8
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 4.9e-58 229.6 500 40.0
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 7.1e-57 225.7 519 39.5
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 3.5e-56 223.4 500 40.4
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 1.1e-54 218.4 485 35.9
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 3.1e-52 210.3 525 40.2
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 6.8e-52 209.1 511 36.2
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 8.9e-52 208.8 511 36.2
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 1.5e-51 208.0 495 34.7
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 3.8e-50 203.4 498 35.1
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 1.1e-49 201.8 495 36.2
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 3.2e-49 200.3 494 41.9
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 4.2e-49 199.9 517 34.8
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 9.2e-49 198.7 509 34.4
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 1.6e-48 198.0 514 38.3
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 3.0e-47 193.7 526 33.7
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 6.6e-47 192.6 499 32.3
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 1.1e-46 191.8 500 38.8
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 4.3e-46 189.9 497 38.0
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 3.6e-45 186.8 509 34.2
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 6.2e-45 186.0 505 35.6
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.1e-44 185.3 490 34.7
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.4e-44 184.1 500 36.6
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 4.0e-44 183.3 508 37.8
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 9.0e-44 182.2 503 33.6
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 2.6e-43 180.6 356 37.9
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 5.8e-43 179.5 438 37.9
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 5.8e-43 179.5 508 40.9
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 9.9e-43 178.7 431 36.7
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 2.9e-42 177.2 449 41.4
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 3.8e-42 176.8 496 33.1
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 6.4e-42 176.0 520 32.7
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.1e-41 175.3 525 36.6
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.4e-41 174.1 531 34.5
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.2e-41 173.7 466 39.7
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 5.4e-41 172.9 509 37.3
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 2.1e-40 171.0 517 32.7
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 2.1e-40 171.0 368 35.1
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 2.1e-40 171.0 498 31.3
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 7.8e-40 169.1 487 32.0
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 2.3e-39 167.5 531 31.8
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 3.0e-39 167.2 475 36.8
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 6.6e-39 166.0 532 31.6
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 8.7e-39 165.6 513 33.1
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.1e-38 165.2 516 33.5
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.5e-38 164.9 453 32.7
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.5e-38 164.9 505 31.3
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 2.5e-38 164.1 490 31.2
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 9.6e-38 162.2 509 34.0
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 9.6e-38 162.2 516 32.8
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 9.6e-38 162.2 335 43.9
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 2.8e-37 160.6 540 30.7
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 3.6e-37 160.2 495 29.5
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 8.1e-37 159.1 497 31.6
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 3.1e-36 157.1 428 31.5
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 4.0e-36 156.8 486 33.3
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 4.0e-36 156.8 492 36.0
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 5.3e-36 156.4 369 33.9
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 6.9e-36 156.0 489 30.5
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 9.0e-36 155.6 389 33.7
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 2.0e-35 154.5 402 39.1
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 2.6e-35 154.1 488 29.7
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 3.4e-35 153.7 466 38.8
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 4.5e-35 153.3 499 30.1
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 5.8e-35 152.9 391 33.8
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 9.9e-35 152.1 493 28.8
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 4.9e-34 149.8 452 38.9
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 5.4e-33 146.4 426 35.4
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 7.1e-33 146.0 448 33.0
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 7.1e-33 146.0 448 33.0
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 1.6e-32 144.8 485 34.8
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 2.1e-32 144.4 499 30.3
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 3.5e-32 143.7 463 39.1
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.0e-32 142.9 439 31.0
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 3.0e-31 140.6 449 30.3
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 8.7e-31 139.0 414 30.7
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 2.5e-30 137.5 461 32.5
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 4.3e-30 136.7 357 36.7
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 7.4e-30 136.0 404 30.7
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 6.2e-29 132.9 469 32.2
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 8.1e-29 132.5 385 31.4
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 6.9e-28 129.4 241 38.2
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 2.9e-26 124.0 416 31.0
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 2.5e-25 120.9 450 27.8
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 5.5e-25 119.8 384 30.7
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 7.1e-25 119.4 460 29.1
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 7.1e-25 119.4 485 32.0
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 7.1e-25 119.4 495 30.5
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 2.1e-24 117.9 417 33.1
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 2.1e-24 117.9 279 33.7
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 6.0e-24 116.3 182 44.0
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 1.8e-23 114.8 465 25.8
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 3.0e-23 114.0 386 28.2
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.5e-22 110.9 230 39.6
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 3.3e-22 110.5 434 28.6
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.3e-22 110.2 267 33.3
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 4.3e-22 110.2 313 37.4
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 9.6e-22 109.0 406 27.8
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 4.8e-21 106.7 222 37.8
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 1.1e-20 105.5 280 30.4
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 1.4e-20 105.1 332 28.6
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 4.5e-19 100.1 240 32.1
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.9e-17 94.7 158 39.9
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 5.7e-14 83.2 58 69.0
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 9.7e-14 82.4 60 65.0
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 9.7e-14 82.4 64 59.4
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 1.3e-13 82.0 445 25.4
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.6e-13 81.6 265 31.3
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.8e-13 80.9 59 62.7
AL7G40510 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 2.0e-11 74.7 44 88.6
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.0e-10 72.4 133 40.6
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 3.8e-10 70.5 187 29.9
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 6.5e-10 69.7 333 24.3
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 5.5e-09 66.6 266 27.1
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 5.5e-09 66.6 58 53.4
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 1.0e-07 62.4 224 28.1
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 3.0e-07 60.8 55 50.9


User provided reference genes

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