Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17122 Brassica carinata HOM05D004133 ORTHO05D004683 5.6e-30 133.7 69 100.0
BcaC03g13852 Brassica carinata HOM05D004133 ORTHO05D004683 2.0e-11 72.0 68 63.2
Aa31LG1G13430 Aethionema arabicum HOM05D004133 ORTHO05D004683 3.4e-11 71.2 68 61.8
Thhalv10013111m.g Eutrema salsugineum HOM05D004133 ORTHO05D004683 9.9e-11 69.7 68 60.3
Sp6g23200 Schrenkiella parvula HOM05D004133 ORTHO05D004683 9.9e-11 69.7 68 60.3
CARHR191540 Cardamine hirsuta HOM05D004133 ORTHO05D004683 2.2e-10 68.6 68 60.3
Carub.0006s1963 Capsella rubella HOM05D004133 ORTHO05D004683 2.9e-10 68.2 68 57.4
BcaB08g36460 Brassica carinata HOM05D004133 ORTHO05D004683 3.8e-10 67.8 68 57.4
BraA02t05633Z Brassica rapa HOM05D004133 ORTHO05D004683 4.9e-10 67.4 63 63.5
Lj2A832T11 Lonicera japonica HOM05D004133 ORTHO05D004683 8.4e-10 66.6 60 61.7
PSO339G3867 Papaver somniferum HOM05D004133 ORTHO05D004683 8.4e-10 66.6 61 59.0
PSO384G2343 Papaver somniferum HOM05D004133 ORTHO05D004683 8.4e-10 66.6 61 59.0
Nitab4.5_0000875g0040 Nicotiana tabacum HOM05D004133 ORTHO05D004683 1.1e-09 66.2 60 61.7
Nitab4.5_0002183g0030 Nicotiana tabacum HOM05D004133 ORTHO05D004683 1.1e-09 66.2 60 61.7
Glyma.12G096600 Glycine max HOM05D004133 ORTHO05D004683 1.4e-09 65.9 60 61.7
Os07g0161000 Oryza sativa ssp. japonica HOM05D004133 ORTHO05D004683 1.4e-09 65.9 60 60.0
Migut.N02432 Erythranthe guttata HOM05D004133 ORTHO05D004683 2.4e-09 65.1 60 60.0
QL01p018923 Quercus lobata HOM05D004133 ORTHO05D004683 4.2e-09 64.3 60 58.3
TWI79G1660 Tripterygium wilfordii HOM05D004133 ORTHO05D004683 5.4e-09 63.9 60 61.7
arahy.Tifrunner.gnm1.ann1.79DDAD Arachis hypogaea HOM05D004133 ORTHO05D004683 7.1e-09 63.5 60 60.0
arahy.Tifrunner.gnm1.ann1.A1UAR7 Arachis hypogaea HOM05D004133 ORTHO05D004683 7.1e-09 63.5 60 60.0
Peaxi162Scf00259g00026 Petunia axillaris HOM05D004133 ORTHO05D004683 7.1e-09 63.5 60 60.0
HanXRQChr13g0420391 Helianthus annuus HOM05D004133 ORTHO05D004683 9.3e-09 63.2 60 58.3
Prupe.6G148800 Prunus persica HOM05D004133 ORTHO05D004683 9.3e-09 63.2 60 56.7
MD03G1160600 Malus domestica HOM05D004133 ORTHO05D004683 1.2e-08 62.8 60 56.7
Medtr4g050120 Medicago truncatula HOM05D004133 ORTHO05D004683 1.2e-08 62.8 60 60.0
Hund18814 Selenicereus undatus HOM05D004133 ORTHO05D004683 1.2e-08 62.8 60 60.0
TAR636G2180 Trochodendron aralioides HOM05D004133 ORTHO05D004683 1.2e-08 62.8 60 56.7
unitig_8.g2980 Utricularia gibba HOM05D004133 ORTHO05D004683 1.2e-08 62.8 60 58.3
EL10Ac7g16263 Beta vulgaris HOM05D004133 ORTHO05D004683 1.6e-08 62.4 60 58.3
Ca_19492_v3 Cicer arietinum L. HOM05D004133 ORTHO05D004683 1.6e-08 62.4 60 60.0
Cc01_g07980 Coffea canephora HOM05D004133 ORTHO05D004683 1.6e-08 62.4 60 56.7
Haze_23604 Corylus avellana HOM05D004133 ORTHO05D004683 1.6e-08 62.4 60 58.3
Glyma.06G308200 Glycine max HOM05D004133 ORTHO05D004683 1.6e-08 62.4 60 60.0
PGR119G1432 Punica granatum HOM05D004133 ORTHO05D004683 1.6e-08 62.4 60 58.3
TPR.G4594 Trifolium pratense HOM05D004133 ORTHO05D004683 1.6e-08 62.4 60 60.0
Oeu051476.1 Olea europaea HOM05D004133 ORTHO05D004683 2.1e-08 62.0 60 56.7
Rhsim13G0198700 Rhododendron simsii HOM05D004133 ORTHO05D004683 2.1e-08 62.0 60 55.0
CANSAT54G1788 Cannabis sativa HOM05D004133 ORTHO05D004683 2.7e-08 61.6 60 56.7
MBI05_g40557_MAGBIO Magnolia biondii HOM05D004133 ORTHO05D004683 2.7e-08 61.6 60 55.0
Phvul.011G101100 Phaseolus vulgaris HOM05D004133 ORTHO05D004683 2.7e-08 61.6 60 56.7
VMungo1127G0510 Vigna mungo HOM05D004133 ORTHO05D004683 2.7e-08 61.6 60 56.7
CiPaw.13G126000 Carya illinoinensis HOM05D004133 ORTHO05D004683 3.5e-08 61.2 60 56.7
Hma1.2p1_1811F.1_g303595 Hydrangea macrophylla HOM05D004133 ORTHO05D004683 3.5e-08 61.2 60 55.0
Lj3g0006419 Lotus japonicus HOM05D004133 ORTHO05D004683 3.5e-08 61.2 60 56.7
TWI31G0797 Tripterygium wilfordii HOM05D004133 ORTHO05D004683 3.5e-08 61.2 60 58.3
CSS0023526 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 4.6e-08 60.8 68 52.9
COL.COLO4_25369 Corchorus olitorius HOM05D004133 ORTHO05D004683 4.6e-08 60.8 55 60.0
Dinv32152 Davidia involucrata HOM05D004133 ORTHO05D004683 4.6e-08 60.8 60 55.0
Eucgr.J00595 Eucalyptus grandis HOM05D004133 ORTHO05D004683 4.6e-08 60.8 38 81.6
THA.LOC104810948 Tarenaya hassleriana HOM05D004133 ORTHO05D004683 4.6e-08 60.8 46 71.7
Cfa010217 Carpinus fangiana HOM05D004133 ORTHO05D004683 6.0e-08 60.5 58 58.6
MELO3C014691.2 Cucumis melo HOM05D004133 ORTHO05D004683 6.0e-08 60.5 60 56.7
Lalb_Chr01g0005781 Lupinus albus HOM05D004133 ORTHO05D004683 6.0e-08 60.5 60 56.7
Sed0020599 Sechium edule HOM05D004133 ORTHO05D004683 6.0e-08 60.5 60 56.7
Lalb_Chr19g0136091 Lupinus albus HOM05D004133 ORTHO05D004683 7.9e-08 60.1 38 78.9
Sabra09G0120200 Salix brachista HOM05D004133 ORTHO05D004683 1.0e-07 59.7 60 58.3
ATR0697G090 Amborella trichopoda HOM05D004133 ORTHO05D004683 1.3e-07 59.3 60 55.0
SGA_v2.0_scaffold16G07524 Striga asiatica HOM05D004133 ORTHO05D004683 1.3e-07 59.3 60 53.3
AUR62001582 Chenopodium quinoa HOM05D004133 ORTHO05D004683 1.8e-07 58.9 36 83.3
AUR62020201 Chenopodium quinoa HOM05D004133 ORTHO05D004683 1.8e-07 58.9 36 83.3
DCAR_012257 Daucus carota HOM05D004133 ORTHO05D004683 2.3e-07 58.5 38 78.9
CBR_g30778 Chara braunii HOM05D004133 ORTHO05D004683 3.0e-07 58.2 58 53.4
Dinv18868 Davidia involucrata HOM05D004133 ORTHO05D004683 3.0e-07 58.2 58 53.4
HPP92_017668 Vanilla planifolia HOM05D004133 ORTHO05D004683 3.0e-07 58.2 38 73.7
Actinidia22456 Actinidia chinensis HOM05D004133 ORTHO05D004683 3.9e-07 57.8 60 53.3
BraA03t10363Z Brassica rapa HOM05D004133 ORTHO05D004683 3.9e-07 57.8 42 73.8
Actinidia12904 Actinidia chinensis HOM05D004133 ORTHO05D004683 5.1e-07 57.4 61 52.5
CsaV3_4G023240 Cucumis sativus L. HOM05D004133 ORTHO05D004683 5.1e-07 57.4 54 61.1
Manes.11G104780 Manihot esculenta HOM05D004133 ORTHO05D004683 5.1e-07 57.4 37 78.4
Psat7g203680 Pisum sativum HOM05D004133 ORTHO05D004683 5.1e-07 57.4 60 55.0
Sabra04G0127700 Salix brachista HOM05D004133 ORTHO05D004683 5.1e-07 57.4 36 80.6
MSTRG.17668 Avicennia marina HOM05D004133 ORTHO05D004683 8.7e-07 56.6 37 78.4
C05p31580 Brassica napus HOM05D004133 ORTHO05D004683 8.7e-07 56.6 74 50.0
Duzib170G1022 Durio zibethinus HOM05D004133 ORTHO05D004683 8.7e-07 56.6 37 75.7
Nitab4.5_0006895g0040 Nicotiana tabacum HOM05D004133 ORTHO05D004683 8.7e-07 56.6 49 67.3
CSS0028218 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 1.1e-06 56.2 38 73.7
Gohir.D05G080150 Gossypium hirsutum HOM05D004133 ORTHO05D004683 1.1e-06 56.2 60 55.0
Gorai.009G081800 Gossypium raimondii HOM05D004133 ORTHO05D004683 1.5e-06 55.8 60 55.0
SalBow3G0269 Salvia bowleyana HOM05D004133 ORTHO05D004683 1.5e-06 55.8 38 73.7
vmacro04056 Vaccinium macrocarpon HOM05D004133 ORTHO05D004683 1.9e-06 55.5 68 48.5
GSVIVG01037520001 Vitis vinifera HOM05D004133 ORTHO05D004683 1.9e-06 55.5 68 47.1
Gohir.D08G017300 Gossypium hirsutum HOM05D004133 ORTHO05D004683 2.5e-06 55.1 36 75.0
Gorai.004G011700 Gossypium raimondii HOM05D004133 ORTHO05D004683 2.5e-06 55.1 36 75.0
Cpa.g.sc103.47 Carica papaya HOM05D004133 ORTHO05D004683 3.3e-06 54.7 53 60.4
CDE10G0036 Ceratophyllum demersum HOM05D004133 ORTHO05D004683 3.3e-06 54.7 60 48.3
Thecc.09G268600 Theobroma cacao HOM05D004133 ORTHO05D004683 3.3e-06 54.7 37 73.0
ECA238G1841 Erigeron canadensis HOM05D004133 ORTHO05D004683 4.3e-06 54.3 38 68.4
HanXRQChr05g0137041 Helianthus annuus HOM05D004133 ORTHO05D004683 4.3e-06 54.3 38 68.4
Lsat_1_v5_gn_2_35581 Lactuca sativa HOM05D004133 ORTHO05D004683 4.3e-06 54.3 38 68.4
Gohir.A08G007200 Gossypium hirsutum HOM05D004133 ORTHO05D004683 5.6e-06 53.9 36 72.2
Zm00001eb300510 Zea mays HOM05D004133 ORTHO05D004683 7.4e-06 53.5 35 77.1
FAN16G0897 Fragaria x ananassa HOM05D004133 ORTHO05D004683 9.6e-06 53.1 57 52.6
Gohir.A05G077350 Gossypium hirsutum HOM05D004133 ORTHO05D004683 9.6e-06 53.1 58 53.4


User provided reference genes

Program Settings