Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17088 Brassica carinata HOM05D001245 ORTHO05D005230 7.8e-129 463.8 229 100.0
A06p17710 Brassica napus HOM05D001245 ORTHO05D005230 2.5e-87 325.9 165 93.9
BraA06t24863Z Brassica rapa HOM05D001245 ORTHO05D005230 2.5e-87 325.9 165 93.9
BcaB07g32157 Brassica carinata HOM05D001245 ORTHO05D005230 5.7e-87 324.7 165 93.3
BcaC05g26081 Brassica carinata HOM05D001245 ORTHO05D005230 5.7e-87 324.7 165 93.3
C05p20610 Brassica napus HOM05D001245 ORTHO05D005230 5.7e-87 324.7 165 93.3
BolC5t30759H Brassica oleracea HOM05D001245 ORTHO05D005230 5.7e-87 324.7 165 93.3
Thhalv10006690m.g Eutrema salsugineum HOM05D001245 ORTHO05D005230 9.7e-87 323.9 165 92.7
Sp1g19160 Schrenkiella parvula HOM05D001245 ORTHO05D005230 9.7e-87 323.9 165 92.7
CARHR021990 Cardamine hirsuta HOM05D001245 ORTHO05D005230 4.8e-86 321.6 165 91.5
AL1G34780 Arabidopsis lyrata HOM05D001245 ORTHO05D005230 6.3e-86 321.2 165 92.1
AT1G21640 Arabidopsis thaliana HOM05D001245 ORTHO05D005230 1.1e-85 320.5 165 91.5
Carub.0001s2106 Capsella rubella HOM05D001245 ORTHO05D005230 9.1e-85 317.4 165 90.9
Aa31LG7G5610 Aethionema arabicum HOM05D001245 ORTHO05D005230 2.9e-83 312.4 165 89.1
THA.LOC104800233 Tarenaya hassleriana HOM05D001245 ORTHO05D005230 1.1e-77 293.9 163 84.7
THA.LOC104810241 Tarenaya hassleriana HOM05D001245 ORTHO05D005230 1.1e-77 293.9 163 84.7
THA.LOC104818532 Tarenaya hassleriana HOM05D001245 ORTHO05D005230 1.1e-77 293.9 163 84.7
Cpa.g.sc64.149 Carica papaya HOM05D001245 ORTHO05D005230 2.8e-70 269.2 166 77.1
Atru.chr13.1559 Acer truncatum HOM05D001245 ORTHO05D005230 3.5e-68 262.3 162 73.5
Cfa018126 Carpinus fangiana HOM05D001245 ORTHO05D005230 3.5e-68 262.3 161 74.5
Ciclev10000146m.g Citrus clementina HOM05D001245 ORTHO05D005230 3.5e-68 262.3 165 70.9
Potri.005G182600 Populus trichocarpa HOM05D001245 ORTHO05D005230 5.9e-68 261.5 162 73.5
Thecc.08G132700 Theobroma cacao HOM05D001245 ORTHO05D005230 6.5e-67 258.1 165 70.9
CiPaw.15G031500 Carya illinoinensis HOM05D001245 ORTHO05D005230 1.1e-66 257.3 162 73.5
COL.COLO4_08843 Corchorus olitorius HOM05D001245 ORTHO05D005230 1.1e-66 257.3 165 71.5
Sabra02G0061600 Salix brachista HOM05D001245 ORTHO05D005230 2.5e-66 256.1 162 70.4
Gohir.D05G239900 Gossypium hirsutum HOM05D001245 ORTHO05D005230 4.2e-66 255.4 164 72.0
Gorai.009G248800 Gossypium raimondii HOM05D001245 ORTHO05D005230 4.2e-66 255.4 164 72.0
Dinv27279 Davidia involucrata HOM05D001245 ORTHO05D005230 5.5e-66 255.0 165 70.9
Duzib093G0544 Durio zibethinus HOM05D001245 ORTHO05D005230 5.5e-66 255.0 165 70.9
Potri.002G078700 Populus trichocarpa HOM05D001245 ORTHO05D005230 7.2e-66 254.6 165 70.9
Gohir.D03G069002 Gossypium hirsutum HOM05D001245 ORTHO05D005230 1.2e-65 253.8 165 72.1
Gorai.013G107600 Gossypium raimondii HOM05D001245 ORTHO05D005230 2.7e-65 252.7 165 71.5
Gohir.A02G110300 Gossypium hirsutum HOM05D001245 ORTHO05D005230 4.7e-65 251.9 165 70.9
Sabra05G0138400 Salix brachista HOM05D001245 ORTHO05D005230 4.7e-65 251.9 159 71.7
Dinv14681 Davidia involucrata HOM05D001245 ORTHO05D005230 1.0e-64 250.8 162 70.4
Eucgr.F03840 Eucalyptus grandis HOM05D001245 ORTHO05D005230 5.2e-64 248.4 164 71.3
TWI60G0016 Tripterygium wilfordii HOM05D001245 ORTHO05D005230 8.8e-64 247.7 162 70.4
CiPaw.16G023000 Carya illinoinensis HOM05D001245 ORTHO05D005230 1.2e-63 247.3 162 69.1
Prupe.1G489900 Prunus persica HOM05D001245 ORTHO05D005230 1.2e-63 247.3 159 70.4
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 7.5e-63 244.6 164 67.7
Actinidia29487 Actinidia chinensis HOM05D001245 ORTHO05D005230 9.7e-63 244.2 164 65.9
Hma1.2p1_0420F.1_g149640 Hydrangea macrophylla HOM05D001245 ORTHO05D005230 4.8e-62 241.9 165 66.7
QL09p032559 Quercus lobata HOM05D001245 ORTHO05D005230 4.8e-62 241.9 163 68.7
Lalb_Chr04g0253541 Lupinus albus HOM05D001245 ORTHO05D005230 6.3e-62 241.5 168 65.5
CSS0006563 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D005230 8.3e-62 241.1 164 67.7
Glyma.04G245800 Glycine max HOM05D001245 ORTHO05D005230 1.1e-61 240.7 166 66.3
CANSAT25G3405 Cannabis sativa HOM05D001245 ORTHO05D005230 1.8e-61 240.0 163 66.9
CSS0005790 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D005230 2.4e-61 239.6 164 67.7
Glyma.14G154600 Glycine max HOM05D001245 ORTHO05D005230 4.1e-61 238.8 166 65.7
Lj1g0027388 Lotus japonicus HOM05D001245 ORTHO05D005230 4.1e-61 238.8 166 64.5
Nitab4.5_0002045g0010 Nicotiana tabacum HOM05D001245 ORTHO05D005230 4.1e-61 238.8 162 67.9
Medtr1g029620 Medicago truncatula HOM05D001245 ORTHO05D005230 5.3e-61 238.4 166 66.3
vmacro00860 Vaccinium macrocarpon HOM05D001245 ORTHO05D005230 5.3e-61 238.4 163 65.6
ClCG08G006000 Citrullus lanatus HOM05D001245 ORTHO05D005230 7.0e-61 238.0 155 69.0
MD08G1160800 Malus domestica HOM05D001245 ORTHO05D005230 7.0e-61 238.0 162 68.5
Nn5g28433 Nelumbo nucifera HOM05D001245 ORTHO05D005230 7.0e-61 238.0 162 68.5
Nitab4.5_0006116g0040 Nicotiana tabacum HOM05D001245 ORTHO05D005230 7.0e-61 238.0 167 65.9
Lsat_1_v5_gn_4_133761 Lactuca sativa HOM05D001245 ORTHO05D005230 9.1e-61 237.7 162 67.9
MELO3C010654.2 Cucumis melo HOM05D001245 ORTHO05D005230 1.2e-60 237.3 155 69.0
HanXRQChr11g0326051 Helianthus annuus HOM05D001245 ORTHO05D005230 1.2e-60 237.3 164 65.9
Nitab4.5_0003240g0050 Nicotiana tabacum HOM05D001245 ORTHO05D005230 1.2e-60 237.3 159 68.6
CsaV3_6G034080 Cucumis sativus L. HOM05D001245 ORTHO05D005230 1.6e-60 236.9 155 69.0
HanXRQChr09g0260671 Helianthus annuus HOM05D001245 ORTHO05D005230 1.6e-60 236.9 164 64.6
Rhsim11G0071200 Rhododendron simsii HOM05D001245 ORTHO05D005230 1.6e-60 236.9 164 65.2
CAN.G531.6 Capsicum annuum HOM05D001245 ORTHO05D005230 2.0e-60 236.5 159 66.7
Lj1g0024618 Lotus japonicus HOM05D001245 ORTHO05D005230 2.0e-60 236.5 168 66.7
BcaB06g27251 Brassica carinata HOM05D001245 ORTHO05D005230 3.5e-60 235.7 190 64.2
Glyma.13G032400 Glycine max HOM05D001245 ORTHO05D005230 3.5e-60 235.7 166 65.1
Nitab4.5_0001168g0130 Nicotiana tabacum HOM05D001245 ORTHO05D005230 5.9e-60 235.0 162 66.7
ECA232G2648 Erigeron canadensis HOM05D001245 ORTHO05D005230 7.7e-60 234.6 164 65.9
Gohir.A11G210300 Gossypium hirsutum HOM05D001245 ORTHO05D005230 1.3e-59 233.8 164 65.2
Sed0026204 Sechium edule HOM05D001245 ORTHO05D005230 1.3e-59 233.8 155 67.7
Ca_12648_v3 Cicer arietinum L. HOM05D001245 ORTHO05D005230 1.7e-59 233.4 166 65.1
Nn1g08964 Nelumbo nucifera HOM05D001245 ORTHO05D005230 1.7e-59 233.4 163 65.0
Peaxi162Scf00051g02115 Petunia axillaris HOM05D001245 ORTHO05D005230 1.7e-59 233.4 162 64.2
PGR044G1057 Punica granatum HOM05D001245 ORTHO05D005230 1.7e-59 233.4 160 69.4
Sc02g0004740 Simmondsia chinensis HOM05D001245 ORTHO05D005230 3.8e-59 232.3 176 63.1
VMungo1309G0776 Vigna mungo HOM05D001245 ORTHO05D005230 5.0e-59 231.9 166 63.3
TPR.G30568 Trifolium pratense HOM05D001245 ORTHO05D005230 6.5e-59 231.5 166 63.9
Lalb_Chr08g0241121 Lupinus albus HOM05D001245 ORTHO05D005230 1.5e-58 230.3 166 63.9
Phvul.001G070700 Phaseolus vulgaris HOM05D001245 ORTHO05D005230 1.5e-58 230.3 166 63.9
RcHm_v2.0_Chr6g0296671 Rosa chinensis HOM05D001245 ORTHO05D005230 1.9e-58 229.9 161 69.6
Sopen06g020180 Solanum pennellii HOM05D001245 ORTHO05D005230 1.9e-58 229.9 175 61.1
Ca_16606_v3 Cicer arietinum L. HOM05D003077 ORTHO05D005230 2.5e-58 229.6 166 62.7
SGA_v2.0_scaffold52G18927 Striga asiatica HOM05D001245 ORTHO05D005230 2.5e-58 229.6 165 62.4
Migut.C01062 Erythranthe guttata HOM05D001245 ORTHO05D005230 3.2e-58 229.2 161 66.5
Glyma.06G117300 Glycine max HOM05D001245 ORTHO05D005230 3.2e-58 229.2 166 63.9
Cc10_g12740 Coffea canephora HOM05D001245 ORTHO05D005230 4.2e-58 228.8 163 64.4
Oeu051976.1 Olea europaea HOM05D001245 ORTHO05D005230 4.2e-58 228.8 159 65.4
PGSC0003DMG402011782 Solanum tuberosum HOM05D001245 ORTHO05D005230 4.2e-58 228.8 162 63.6
Psat6g040280 Pisum sativum HOM05D001245 ORTHO05D005230 5.5e-58 228.4 162 66.7
MBI03_g28484_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D005230 2.7e-57 226.1 160 60.0
GSVIVG01008810001 Vitis vinifera HOM05D001245 ORTHO05D005230 2.7e-57 226.1 145 73.1
Medtr3g088575 Medicago truncatula HOM05D001245 ORTHO05D005230 3.6e-57 225.7 161 64.0
Aqoxy5G02377 Aquilegia oxysepala HOM05D001245 ORTHO05D005230 8.0e-57 224.6 162 63.0
FAN27G0075 Fragaria x ananassa HOM05D001245 ORTHO05D005230 1.0e-56 224.2 158 69.0
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 1.8e-56 223.4 156 69.2
Hund26775 Selenicereus undatus HOM05D001245 ORTHO05D005230 2.3e-56 223.0 165 63.0
arahy.Tifrunner.gnm1.ann1.XY3TEF Arachis hypogaea HOM05D001245 ORTHO05D005230 3.0e-56 222.6 162 63.0
Psat5g084880 Pisum sativum HOM05D001245 ORTHO05D005230 3.0e-56 222.6 180 60.0
Solyc11g005100.3 Solanum lycopersicum HOM05D001245 ORTHO05D005230 3.0e-56 222.6 162 64.2
Sopen11g001100 Solanum pennellii HOM05D001245 ORTHO05D005230 3.0e-56 222.6 162 64.2
arahy.Tifrunner.gnm1.ann1.H3TQMF Arachis hypogaea HOM05D001245 ORTHO05D005230 6.8e-56 221.5 167 61.1
FvH4_2g27820 Fragaria vesca HOM05D001245 ORTHO05D005230 6.8e-56 221.5 156 69.2
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 6.8e-56 221.5 156 69.2
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 6.8e-56 221.5 156 69.2
Phvul.009G129700 Phaseolus vulgaris HOM05D001245 ORTHO05D005230 6.8e-56 221.5 166 60.8
SalBow7G3837 Salvia bowleyana HOM05D001245 ORTHO05D005230 1.2e-55 220.7 161 64.0
SalBow7G3974 Salvia bowleyana HOM05D001245 ORTHO05D005230 1.2e-55 220.7 161 64.0
Actinidia15219 Actinidia chinensis HOM05D001245 ORTHO05D005230 1.5e-55 220.3 161 64.0
arahy.Tifrunner.gnm1.ann1.MS2M1P Arachis hypogaea HOM05D001245 ORTHO05D005230 3.4e-55 219.2 166 60.8
MSTRG.25362 Avicennia marina HOM05D001245 ORTHO05D005230 1.3e-54 217.2 160 61.9
AUR62007719 Chenopodium quinoa HOM05D001245 ORTHO05D005230 2.8e-54 216.1 165 61.8
AUR62013423 Chenopodium quinoa HOM05D001245 ORTHO05D005230 2.8e-54 216.1 165 61.8
EL10Ac1g01342 Beta vulgaris HOM05D001245 ORTHO05D005230 3.7e-54 215.7 159 63.5
Hund17340 Selenicereus undatus HOM05D001245 ORTHO05D005230 1.8e-53 213.4 168 58.3
MSTRG.1415 Avicennia marina HOM05D001245 ORTHO05D005230 4.1e-53 212.2 159 62.9
Zm00001eb201410 Zea mays HOM05D001245 ORTHO05D005230 7.7e-52 208.0 163 58.3
PSO528G0171 Papaver somniferum HOM05D001245 ORTHO05D005230 1.7e-51 206.8 167 59.9
Os11g0191400 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D005230 2.3e-51 206.5 163 57.1
PSO170G3940 Papaver somniferum HOM05D001245 ORTHO05D005230 2.3e-51 206.5 167 59.3
Zm00001eb091060 Zea mays HOM05D001245 ORTHO05D005230 1.9e-50 203.4 162 57.4
Lj7C350T12 Lonicera japonica HOM05D001245 ORTHO05D005230 2.8e-49 199.5 164 59.1
ATR0584G287 Amborella trichopoda HOM05D001245 ORTHO05D005230 1.0e-48 197.6 165 53.9
HPP92_009278 Vanilla planifolia HOM05D001245 ORTHO05D005230 1.8e-48 196.8 163 55.2
BcaB02g06946 Brassica carinata HOM05D001245 ORTHO05D005230 1.7e-46 190.3 126 79.4
Manes.18G082200 Manihot esculenta HOM05D001245 ORTHO05D005230 1.3e-43 180.6 124 68.5
CSS0001754 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D005230 3.3e-42 176.0 126 63.5
SEGI_31825 Sequoiadendron giganteum HOM05D001245 ORTHO05D005230 7.3e-42 174.9 157 51.0
SEGI_32042 Sequoiadendron giganteum HOM05D001245 ORTHO05D005230 7.3e-42 174.9 157 51.0
Gohir.A05G341300 Gossypium hirsutum HOM05D001245 ORTHO05D005230 2.0e-39 166.8 159 52.2
Gohir.A13G092245 Gossypium hirsutum HOM05D001245 ORTHO05D005230 4.4e-39 165.6 126 61.9
Sed0025958 Sechium edule HOM05D001245 ORTHO05D005230 4.7e-33 145.6 153 49.0
unitig_46.g18090 Utricularia gibba HOM05D001245 ORTHO05D005230 1.1e-29 134.4 114 57.9
CDE08G0714 Ceratophyllum demersum HOM05D001245 ORTHO05D005230 1.1e-26 124.4 96 59.4
CDE06G1485 Ceratophyllum demersum HOM05D001245 ORTHO05D005230 3.3e-26 122.9 100 58.0
TPR.G13467 Trifolium pratense HOM05D001245 ORTHO05D005230 1.1e-21 107.8 66 71.2
Pp3c18_2030 Physcomitrium patens HOM05D001245 ORTHO05D005230 3.5e-20 102.8 151 41.1
Mapoly0020s0027 Marchantia polymorpha HOM05D001245 ORTHO05D005230 2.4e-16 90.1 164 33.5
AagrBONN_evm.TU.Sc2ySwM_344.3331 Anthoceros agrestis HOM05D001245 ORTHO05D005230 2.6e-15 86.7 158 32.9
Solyc06g060060.4 Solanum lycopersicum HOM05D001245 ORTHO05D005230 1.7e-14 84.0 68 54.4
Nn5g28337 Nelumbo nucifera HOM05D001245 ORTHO05D005230 1.1e-13 81.3 70 57.1
CBR_g27885 Chara braunii HOM05D001245 ORTHO05D005230 2.4e-13 80.1 220 29.1
BcaB07g33598 Brassica carinata HOM05D000336 ORTHO05D000593 7.3e-10 68.6 41 85.4
SMO196G0088 Selaginella moellendorffii HOM05D001245 ORTHO05D005230 1.6e-09 67.4 99 37.4


User provided reference genes

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