Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 5.0e-176 620.9 300 100.0
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 5.6e-119 431.4 292 75.3
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 9.6e-119 430.6 293 76.5
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 3.7e-118 428.7 293 75.8
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 3.7e-118 428.7 292 74.7
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 1.8e-117 426.4 293 75.4
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 7.6e-116 421.0 292 74.0
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 8.4e-115 417.5 292 73.6
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 2.7e-113 412.5 292 72.6
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 1.0e-112 410.6 292 71.9
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 7.4e-111 404.4 293 72.0
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 1.2e-108 397.1 296 72.3
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 1.0e-107 394.0 303 68.3
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 1.1e-106 390.6 292 69.2
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 1.9e-106 389.8 334 63.8
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 1.9e-106 389.8 334 63.8
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 5.5e-106 388.3 295 69.5
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 2.1e-105 386.3 340 61.8
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 2.1e-105 386.3 340 61.8
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 1.1e-103 380.6 294 68.7
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 2.5e-98 362.8 296 65.2
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 1.2e-97 360.5 295 65.4
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 1.7e-86 323.6 296 57.8
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 8.2e-86 321.2 296 58.1
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 2.4e-85 319.7 296 58.1
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 5.0e-83 312.0 304 57.9
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 5.0e-83 312.0 296 57.4
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.5e-82 310.5 296 58.4
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 2.5e-82 309.7 296 57.8
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 2.5e-82 309.7 296 56.8
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 2.1e-81 306.6 296 57.8
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 6.1e-81 305.1 296 57.4
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 8.0e-81 304.7 297 55.9
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.0e-80 304.3 296 56.8
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.3e-80 303.1 296 57.4
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 8.8e-80 301.2 305 58.7
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.0e-79 300.1 296 56.8
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 7.5e-79 298.1 296 56.4
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 7.5e-79 298.1 297 56.2
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 1.3e-78 297.4 296 54.4
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 2.8e-78 296.2 328 52.4
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 2.8e-78 296.2 296 55.7
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 2.8e-78 296.2 297 55.2
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 4.8e-78 295.4 296 54.1
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 2.4e-77 293.1 297 55.2
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 2.4e-77 293.1 297 56.2
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 4.1e-77 292.4 297 54.5
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.6e-76 290.4 296 55.7
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 7.7e-76 288.1 313 53.7
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.9e-75 286.2 299 55.2
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.1e-74 284.3 296 54.4
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 3.2e-74 282.7 297 54.5
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 4.2e-74 282.3 297 55.2
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 1.2e-73 280.8 297 52.5
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.1e-73 280.0 296 52.7
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.6e-73 279.3 304 53.3
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 3.6e-73 279.3 297 53.5
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 4.7e-73 278.9 296 52.4
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 4.7e-73 278.9 303 53.8
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 6.1e-73 278.5 296 52.7
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 2.3e-72 276.6 297 53.5
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 3.0e-72 276.2 300 54.3
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 3.0e-72 276.2 296 53.4
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 4.0e-72 275.8 302 52.6
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 5.2e-72 275.4 296 53.7
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.2e-71 274.2 297 53.2
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 1.4e-69 267.3 297 51.5
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 1.8e-69 266.9 221 66.5
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 1.8e-69 266.9 293 51.9
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 9.1e-69 264.6 301 52.8
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 1.2e-68 264.2 301 51.5
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 2.7e-68 263.1 302 50.7
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 3.5e-68 262.7 296 51.7
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 3.5e-68 262.7 296 52.4
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 4.5e-68 262.3 298 51.3
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 2.2e-67 260.0 297 49.5
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 1.1e-66 257.7 214 66.8
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 1.1e-66 257.7 214 66.8
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 4.2e-66 255.8 298 50.7
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 1.6e-65 253.8 298 49.7
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 1.6e-65 253.8 303 49.8
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 1.6e-65 253.8 292 48.3
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 2.3e-64 250.0 312 49.0
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 3.0e-64 249.6 299 47.8
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 5.2e-64 248.8 273 52.4
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 6.8e-64 248.4 298 50.0
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 1.2e-63 247.7 280 51.4
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 2.0e-63 246.9 301 48.5
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 5.7e-63 245.4 311 47.6
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 7.5e-63 245.0 271 52.0
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 1.4e-61 240.7 299 48.2
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 1.4e-61 240.7 244 54.9
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 3.1e-61 239.6 309 48.9
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.7e-60 236.5 298 48.3
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 4.5e-60 235.7 261 52.9
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 1.0e-59 234.6 328 43.6
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 1.7e-59 233.8 325 44.9
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 1.1e-58 231.1 224 55.8
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 4.3e-58 229.2 203 61.6
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 7.3e-58 228.4 309 47.2
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.1e-57 226.9 310 47.1
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.8e-56 223.8 223 53.8
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 7.5e-55 218.4 296 47.3
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 7.5e-55 218.4 299 48.5
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 7.5e-55 218.4 220 55.5
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.7e-54 217.2 246 54.1
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 1.7e-54 217.2 244 52.5
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 2.9e-54 216.5 288 49.0
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 2.9e-54 216.5 296 47.0
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 1.1e-53 214.5 272 48.9
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.4e-53 214.2 273 48.4
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 7.0e-53 211.8 280 47.9
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 1.2e-52 211.1 297 44.8
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 2.3e-51 206.8 151 68.9
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 3.0e-51 206.5 244 51.6
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 5.0e-51 205.7 244 51.6
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 6.2e-49 198.7 202 55.9
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 2.3e-48 196.8 229 52.0
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 9.8e-47 191.4 238 50.4
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.2e-46 190.3 277 45.5
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 1.1e-42 177.9 209 54.1
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 2.1e-41 173.7 193 50.3
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 6.2e-41 172.2 205 52.2
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 5.2e-40 169.1 205 51.7
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 2.1e-36 157.1 292 40.1
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 3.5e-36 156.4 232 45.7
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 8.6e-35 151.8 206 47.1
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 5.6e-34 149.1 249 40.6
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 5.6e-34 149.1 157 55.4
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 6.2e-33 145.6 213 45.5
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 2.3e-32 143.7 203 46.3
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 4.0e-32 142.9 205 47.8
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 3.4e-31 139.8 167 50.3
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 2.9e-30 136.7 208 45.7
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 2.4e-29 133.7 257 34.6
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 9.2e-29 131.7 143 51.0
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.7e-28 130.2 77 75.3
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 9.6e-26 121.7 322 30.4
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 3.6e-25 119.8 265 32.8
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 5.2e-24 115.9 217 41.5
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 5.2e-24 115.9 151 49.0
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 2.6e-23 113.6 80 58.8
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 9.9e-23 111.7 176 44.9
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 9.9e-23 111.7 216 39.8
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 3.8e-22 109.8 80 61.2
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 3.8e-22 109.8 152 46.1
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 3.5e-20 103.2 275 33.1
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 4.0e-16 89.7 97 45.4
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 5.8e-15 85.9 175 35.4
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 6.4e-14 82.4 45 68.9
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 6.4e-14 82.4 127 48.0
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 7.4e-10 68.9 76 51.3
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 6.2e-09 65.9 189 24.3
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 1.7e-06 57.8 43 67.4
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 8.4e-06 55.5 62 53.2


User provided reference genes

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