Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 5.8e-305 1050.0 521 100.0
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 2.6e-289 998.0 525 94.1
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 6.5e-288 993.4 522 93.5
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 2.5e-287 991.5 522 93.3
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 1.2e-286 989.2 526 92.8
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 2.7e-286 988.0 526 92.6
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 1.1e-276 956.1 529 88.5
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 8.5e-272 939.9 531 86.8
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 1.2e-265 919.5 527 85.0
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 5.5e-263 910.6 527 84.6
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 1.2e-262 909.4 530 84.5
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 3.1e-258 894.8 524 83.2
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 1.1e-247 859.8 530 79.4
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 1.9e-183 646.4 541 58.6
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 1.6e-182 643.3 540 58.5
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 3.7e-182 642.1 535 59.4
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 1.4e-181 640.2 542 58.7
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 2.4e-181 639.4 538 58.9
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 9.0e-181 637.5 546 58.6
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 6.4e-179 631.3 530 58.3
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 9.3e-178 627.5 546 57.7
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 1.2e-177 627.1 542 58.9
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 2.1e-177 626.3 544 57.0
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 3.5e-177 625.5 537 57.4
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 6.0e-177 624.8 534 56.6
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 1.3e-176 623.6 548 56.9
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 2.3e-176 622.9 537 58.5
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 2.1e-174 616.3 541 56.6
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 3.7e-174 615.5 540 57.2
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 6.2e-174 614.8 532 57.3
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 3.1e-173 612.5 534 57.5
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 5.3e-173 611.7 533 57.6
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 6.9e-173 611.3 527 57.9
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 1.5e-172 610.1 525 56.6
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 3.4e-172 609.0 524 57.3
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 1.7e-171 606.7 521 59.3
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 1.1e-170 604.0 535 57.0
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 1.1e-170 604.0 532 57.0
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 1.9e-170 603.2 530 56.6
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 3.2e-170 602.4 533 57.4
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 3.2e-170 602.4 534 55.6
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 2.5e-167 592.8 530 54.7
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 2.2e-166 589.7 530 54.7
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 2.4e-165 586.3 530 54.5
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 2.4e-165 586.3 533 56.5
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 4.1e-165 585.5 529 53.7
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 9.0e-165 584.3 518 57.7
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 2.6e-164 582.8 526 54.8
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 3.4e-164 582.4 518 57.5
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 1.7e-163 580.1 536 53.7
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 2.9e-163 579.3 533 53.3
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 1.4e-162 577.0 537 52.9
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 2.1e-161 573.2 535 53.3
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 7.9e-161 571.2 552 52.0
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 7.9e-161 571.2 523 53.0
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 3.9e-160 568.9 530 53.8
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 8.8e-160 567.8 536 54.9
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 8.8e-160 567.8 533 52.3
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 8.8e-160 567.8 571 51.0
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 2.0e-159 566.6 536 54.7
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 7.4e-159 564.7 531 53.3
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 9.7e-159 564.3 536 54.3
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 3.7e-158 562.4 518 56.6
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 5.9e-156 555.1 631 48.0
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 7.7e-156 554.7 531 51.4
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.7e-155 553.5 496 55.0
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 2.9e-155 552.7 524 51.7
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 3.8e-155 552.4 488 56.8
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 6.5e-155 551.6 523 53.2
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 2.2e-150 536.6 530 52.1
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 3.7e-150 535.8 518 54.8
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 8.2e-150 534.6 535 51.0
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 7.0e-149 531.6 529 51.2
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 2.0e-148 530.0 526 52.7
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 1.3e-147 527.3 359 73.8
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 6.5e-147 525.0 483 53.4
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 1.9e-146 523.5 538 50.6
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 4.7e-145 518.8 508 53.5
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 1.5e-143 513.8 497 59.8
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 2.6e-143 513.1 512 51.0
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 3.3e-143 512.7 758 40.0
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 1.3e-142 510.8 470 53.0
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 1.7e-142 510.4 475 55.6
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 4.1e-141 505.8 465 53.8
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 2.4e-133 479.9 532 47.6
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 6.5e-131 471.9 531 46.9
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 1.5e-130 470.7 522 46.6
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 8.0e-129 464.9 364 60.4
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 5.2e-128 462.2 521 48.4
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 5.0e-123 445.7 437 51.0
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 2.3e-115 420.2 517 44.1
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 5.8e-111 405.6 526 42.4
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 5.8e-111 405.6 518 43.2
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 3.2e-109 399.8 531 41.8
Ca_23471_v3 Cicer arietinum L. HOM05D006671 ORTHO05D008637 6.8e-104 382.1 469 45.8
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 2.3e-99 367.1 295 58.3
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 1.6e-89 334.3 258 59.7
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 1.7e-86 324.3 256 59.0
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 3.6e-81 306.6 184 77.7
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 6.2e-81 305.8 524 35.3
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 5.3e-80 302.8 268 58.6
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 5.8e-79 299.3 275 57.1
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 5.1e-75 286.2 316 50.9
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 6.9e-72 275.8 283 50.9
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 7.6e-71 272.3 207 60.4
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 1.6e-68 264.6 258 56.2
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 2.6e-63 247.3 259 48.6
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 1.3e-59 235.0 439 36.7
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 4.5e-55 219.9 277 45.5
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 3.7e-49 200.3 189 57.7
MCO09G741 Micromonas commoda HOM05D006671 ORTHO05D008637 2.5e-42 177.6 427 31.1
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 2.9e-38 164.1 139 64.7
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 2.9e-38 164.1 139 64.7
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 4.4e-34 150.2 101 76.2
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 1.3e-33 148.7 123 59.3
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 1.2e-31 142.1 302 31.1
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 4.2e-29 133.7 120 53.3
Cfa022026 Carpinus fangiana HOM05D002393 ORTHO05D123579 2.3e-27 127.9 476 26.7
FAN05G4676 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.6e-20 105.1 108 53.7
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 6.3e-17 93.2 141 40.4
AUR62027724 Chenopodium quinoa HOM05D008167 ORTHO05D010296 8.0e-12 76.3 338 23.7
Lsat_1_v5_gn_2_91241 Lactuca sativa HOM05D006671 ORTHO05D011576 2.0e-10 71.6 80 46.2
Pp3c20_15640 Physcomitrium patens HOM05D008167 ORTHO05D010296 2.0e-10 71.6 338 24.3
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 1.3e-09 68.9 83 43.4
BcaB07g33306 Brassica carinata HOM05D000305 ORTHO05D000065 8.3e-09 66.2 33 84.8
EL10Ac1g01257 Beta vulgaris HOM05D008167 ORTHO05D010296 3.1e-08 64.3 369 22.5
CSS0027715 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 4.1e-08 63.9 33 75.8
TAR628G0982 Trochodendron aralioides HOM05D008167 ORTHO05D010296 2.0e-07 61.6 341 20.5
Os06g0222800 Oryza sativa ssp. japonica HOM05D008167 ORTHO05D010296 2.3e-06 58.2 399 21.3
Manes.02G154800 Manihot esculenta HOM05D008167 ORTHO05D010296 8.6e-06 56.2 344 21.5
Nn1g05299 Nelumbo nucifera HOM05D008167 ORTHO05D010296 8.6e-06 56.2 346 20.2


User provided reference genes

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