Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 4.4e-74 282.0 241 100.0
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 7.1e-56 221.5 244 84.0
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 1.6e-55 220.3 242 88.8
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 1.3e-54 217.2 242 88.4
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 1.4e-51 207.2 247 73.3
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 2.4e-51 206.5 244 73.0
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 1.2e-50 204.1 241 81.3
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 1.3e-49 200.7 248 77.8
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 3.9e-46 189.1 223 88.8
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 1.5e-45 187.2 225 82.7
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 2.5e-45 186.4 242 70.7
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 2.9e-41 172.9 267 59.6
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 1.6e-39 167.2 241 65.1
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 6.5e-33 145.2 145 62.1
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 2.5e-32 143.3 98 75.5
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 3.2e-32 142.9 98 73.5
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 5.5e-32 142.1 98 76.5
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 7.2e-32 141.7 98 73.5
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 1.6e-31 140.6 98 73.5
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 4.6e-31 139.0 98 74.5
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 4.6e-31 139.0 99 77.8
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 4.6e-31 139.0 98 72.4
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 4.6e-31 139.0 98 72.4
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 4.6e-31 139.0 98 73.5
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 1.0e-30 137.9 98 73.5
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 2.3e-30 136.7 97 72.2
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 2.3e-30 136.7 97 72.2
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 2.3e-30 136.7 97 72.2
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 2.3e-30 136.7 98 71.4
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 2.3e-30 136.7 98 71.4
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 3.0e-30 136.3 97 72.2
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 3.0e-30 136.3 98 70.4
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 5.1e-30 135.6 98 72.4
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 8.8e-30 134.8 239 49.8
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 1.1e-29 134.4 98 69.4
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 1.1e-29 134.4 94 73.4
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 1.5e-29 134.0 96 71.9
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.5e-29 134.0 98 71.4
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.5e-29 134.0 98 70.4
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 2.0e-29 133.7 98 70.4
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 5.7e-29 132.1 94 74.5
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 7.4e-29 131.7 239 43.5
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 7.4e-29 131.7 98 69.4
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 9.7e-29 131.3 247 46.2
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 9.7e-29 131.3 98 69.4
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 1.3e-28 131.0 96 70.8
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 1.7e-28 130.6 98 68.4
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.2e-28 130.2 98 69.4
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 3.7e-28 129.4 98 69.4
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 3.7e-28 129.4 98 68.4
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 4.8e-28 129.0 98 67.3
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 6.3e-28 128.6 98 68.4
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 2.4e-27 126.7 98 67.3
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 2.4e-27 126.7 96 67.7
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 3.1e-27 126.3 97 67.0
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 4.1e-27 125.9 94 68.1
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 4.1e-27 125.9 94 68.1
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 4.1e-27 125.9 98 65.3
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 4.1e-27 125.9 98 65.3
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 5.3e-27 125.6 98 66.3
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 5.3e-27 125.6 98 66.3
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 6.9e-27 125.2 100 66.0
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 1.2e-26 124.4 127 60.6
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 1.2e-26 124.4 237 46.4
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 1.5e-26 124.0 88 72.7
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 1.5e-26 124.0 98 65.3
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 2.0e-26 123.6 97 66.0
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 3.4e-26 122.9 98 64.3
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 4.5e-26 122.5 94 63.8
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 4.5e-26 122.5 97 64.9
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 7.7e-26 121.7 239 57.7
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 7.7e-26 121.7 98 62.2
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 1.0e-25 121.3 88 68.2
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 2.9e-25 119.8 235 44.7
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 2.9e-25 119.8 94 62.8
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 3.8e-25 119.4 239 55.2
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 5.0e-25 119.0 94 66.0
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 5.0e-25 119.0 239 55.2
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 6.5e-25 118.6 79 77.2
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 8.5e-25 118.2 94 63.8
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 8.5e-25 118.2 93 64.5
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 8.5e-25 118.2 96 59.4
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 1.9e-24 117.1 95 64.2
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 3.2e-24 116.3 88 68.2
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 3.2e-24 116.3 93 63.4
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 4.2e-24 115.9 87 66.7
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 5.5e-24 115.5 84 73.8
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 1.2e-23 114.4 80 80.0
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 4.7e-23 112.5 92 57.6
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.4e-22 110.9 88 65.9
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.8e-22 110.5 78 74.4
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 3.0e-22 109.8 80 78.8
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 6.7e-22 108.6 85 65.9
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 6.7e-22 108.6 78 73.1
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 2.0e-21 107.1 94 56.4
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 1.3e-20 104.4 97 58.8
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 1.3e-20 104.4 100 59.0
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 2.8e-20 103.2 86 61.6
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 9.1e-19 98.2 78 65.4
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 2.2e-17 93.6 81 63.0
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 1.9e-16 90.5 79 57.0
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 1.2e-15 87.8 88 55.7
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 1.2e-15 87.8 88 55.7
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 1.2e-15 87.8 104 50.0
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 2.1e-15 87.0 88 55.7
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 1.0e-14 84.7 92 48.9
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 1.8e-14 84.0 90 47.8
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 4.0e-14 82.8 221 41.6
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 4.4e-13 79.3 59 66.1
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 5.7e-13 79.0 98 46.9
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 2.2e-12 77.0 94 48.9
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 3.7e-12 76.3 90 44.4
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 1.8e-11 73.9 79 58.2
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 2.4e-11 73.6 92 48.9
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 7.0e-11 72.0 47 72.3
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 1.2e-10 71.2 46 71.7
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 2.7e-10 70.1 86 47.7
Aa31LG8G1010 Aethionema arabicum HOM05D006504 ORTHO05D007867 2.2e-09 67.0 68 48.5
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 1.6e-07 60.8 86 44.2
AagrBONN_evm.TU.Sc2ySwM_344.1668 Anthoceros agrestis HOM05D006504 ORTHO05D007867 4.7e-07 59.3 54 53.7
Pp3c21_4920 Physcomitrium patens HOM05D006504 ORTHO05D007867 4.7e-07 59.3 88 36.4
AL1G43410 Arabidopsis lyrata HOM05D021810 ORTHO05D031415 8.8e-06 55.1 31 80.6


User provided reference genes

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