Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 2.1e-118 429.1 226 100.0
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 1.9e-98 362.8 238 85.7
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 7.1e-98 360.9 238 85.3
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 7.1e-98 360.9 238 85.3
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 7.1e-98 360.9 245 86.1
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 1.6e-97 359.8 239 85.8
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 8.1e-94 347.4 240 81.2
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 5.8e-92 341.3 244 79.1
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.7e-88 329.7 239 79.5
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 4.7e-86 321.6 240 73.8
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 8.1e-86 320.9 244 76.6
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 8.9e-85 317.4 243 76.1
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 1.2e-84 317.0 237 77.6
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 8.4e-83 310.8 234 72.6
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 3.2e-82 308.9 234 73.1
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 4.2e-82 308.5 237 72.2
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 1.7e-80 303.1 234 70.9
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 1.7e-80 303.1 234 70.9
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 5.1e-80 301.6 234 71.4
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 1.5e-79 300.1 234 71.4
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 4.3e-79 298.5 234 70.5
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 9.6e-79 297.4 239 68.2
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 2.1e-78 296.2 232 70.3
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 2.1e-78 296.2 232 70.3
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 2.1e-78 296.2 232 70.3
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 8.1e-78 294.3 234 70.1
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 3.5e-65 252.3 229 63.3
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 1.0e-64 250.8 226 60.6
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 1.8e-64 250.0 237 59.9
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 1.5e-63 246.9 247 56.3
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 3.3e-63 245.7 235 58.3
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 4.3e-63 245.4 217 62.7
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 1.3e-62 243.8 241 60.2
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 2.8e-62 242.7 240 58.8
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 2.8e-62 242.7 220 60.5
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 2.4e-61 239.6 227 59.9
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 4.0e-61 238.8 226 57.1
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 9.0e-61 237.7 240 59.6
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 1.2e-60 237.3 234 58.1
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 1.5e-60 236.9 233 56.2
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 5.8e-60 235.0 224 56.2
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 7.6e-60 234.6 224 56.7
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 7.6e-60 234.6 234 57.3
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 1.7e-59 233.4 242 57.9
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 2.9e-59 232.6 218 57.8
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 4.9e-59 231.9 229 57.2
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 3.2e-58 229.2 144 75.7
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 3.2e-58 229.2 234 53.4
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 7.1e-58 228.0 234 55.1
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 2.7e-57 226.1 231 53.7
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 4.6e-57 225.3 217 59.4
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 6.0e-57 224.9 225 54.2
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 7.9e-57 224.6 234 55.1
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 1.0e-56 224.2 242 55.4
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 1.3e-56 223.8 240 53.8
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 2.3e-56 223.0 234 55.6
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 5.1e-56 221.9 220 59.5
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 6.7e-56 221.5 255 51.4
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 8.7e-56 221.1 217 55.8
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 1.1e-55 220.7 217 54.4
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 1.1e-55 220.7 217 57.6
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 1.1e-55 220.7 261 49.4
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 1.1e-55 220.7 218 58.3
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 1.9e-55 219.9 145 71.0
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 2.5e-55 219.5 242 55.4
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 3.3e-55 219.2 145 71.7
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 7.4e-55 218.0 257 51.4
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 1.6e-54 216.9 222 53.6
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 2.8e-54 216.1 236 52.5
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 2.8e-54 216.1 223 53.4
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 2.8e-54 216.1 232 53.0
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 3.7e-54 215.7 257 51.0
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 3.7e-54 215.7 222 57.7
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 3.7e-54 215.7 239 53.1
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 8.2e-54 214.5 224 55.8
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 8.2e-54 214.5 229 54.1
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 8.2e-54 214.5 220 57.3
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.8e-53 213.4 231 55.0
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 2.4e-53 213.0 226 54.9
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 3.1e-53 212.6 145 68.3
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 4.1e-53 212.2 239 52.3
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 4.5e-52 208.8 240 53.3
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 4.5e-52 208.8 141 72.3
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 1.7e-51 206.8 215 53.5
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 2.9e-51 206.1 236 53.8
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 5.0e-51 205.3 139 68.3
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.1e-50 204.1 234 55.1
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 1.4e-50 203.8 271 46.1
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 4.2e-50 202.2 240 50.0
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 5.5e-50 201.8 136 74.3
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 5.5e-50 201.8 274 47.4
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 1.2e-49 200.7 195 58.5
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.6e-49 200.3 238 49.2
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.6e-49 200.3 142 66.2
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 3.5e-49 199.1 204 53.9
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 3.5e-49 199.1 140 67.1
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 4.6e-49 198.7 214 51.9
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 6.1e-49 198.4 244 50.4
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.8e-48 196.8 228 52.6
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 8.7e-48 194.5 239 50.6
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 8.7e-48 194.5 141 65.2
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 1.1e-47 194.1 205 56.6
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 2.5e-47 193.0 143 65.7
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 3.3e-47 192.6 133 67.7
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 6.9e-45 184.9 214 51.9
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.5e-44 183.7 139 62.6
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 5.1e-40 168.7 134 60.4
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 1.3e-38 164.1 126 63.5
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 8.2e-38 161.4 144 65.3
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 1.8e-37 160.2 179 48.0
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 2.6e-36 156.4 131 57.3
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 3.4e-36 156.0 225 46.2
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 2.2e-35 153.3 126 56.3
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 2.2e-35 153.3 106 68.9
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 1.9e-34 150.2 219 45.7
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 3.9e-32 142.5 192 46.9
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 4.1e-29 132.5 159 51.6
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 7.0e-29 131.7 177 43.5
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 5.0e-27 125.6 87 70.1
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 6.5e-27 125.2 86 70.9
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 1.6e-25 120.6 183 44.3
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 1.8e-21 107.1 56 89.3
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 2.5e-18 96.7 124 51.6
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 9.4e-18 94.7 120 37.5
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 2.2e-14 83.6 74 55.4
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.1e-13 81.3 54 70.4
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 4.1e-13 79.3 41 85.4
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 4.7e-09 65.9 88 45.5
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 8.0e-09 65.1 144 31.2


User provided reference genes

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