Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g16967 Brassica carinata HOM05D006726 ORTHO05D008328 5.1e-154 547.7 286 100.0
A08p00750 Brassica napus HOM05D006726 ORTHO05D008328 2.8e-136 488.8 286 89.9
BraA08t32132Z Brassica rapa HOM05D006726 ORTHO05D008328 2.8e-136 488.8 286 89.9
BcaC01g01509 Brassica carinata HOM05D006726 ORTHO05D008328 3.5e-134 481.9 288 90.6
BolC3t21572H Brassica oleracea HOM05D006726 ORTHO05D008328 3.8e-133 478.4 288 88.2
C03p92580 Brassica napus HOM05D006726 ORTHO05D008328 5.5e-132 474.6 288 87.5
Sp1g40950 Schrenkiella parvula HOM05D006726 ORTHO05D008328 1.0e-125 453.8 300 83.0
Thhalv10011547m.g Eutrema salsugineum HOM05D006726 ORTHO05D008328 5.7e-121 438.0 300 79.7
AT1G55280 Arabidopsis thaliana HOM05D006726 ORTHO05D008328 1.4e-119 433.3 291 80.4
Carub.0001s4379 Capsella rubella HOM05D006726 ORTHO05D008328 5.9e-118 427.9 293 79.9
CARHR044940 Cardamine hirsuta HOM05D006726 ORTHO05D008328 3.9e-117 425.2 294 78.9
AL1G63330 Arabidopsis lyrata HOM05D006726 ORTHO05D008328 2.0e-113 412.9 297 78.1
THA.LOC104810333 Tarenaya hassleriana HOM05D006726 ORTHO05D008328 6.4e-88 328.2 301 62.8
CANSAT11G1445 Cannabis sativa HOM05D006726 ORTHO05D008328 2.9e-72 276.2 299 52.2
Ciclev10015417m.g Citrus clementina HOM05D006726 ORTHO05D008328 7.1e-71 271.6 300 53.0
Gohir.A08G011400 Gossypium hirsutum HOM05D006726 ORTHO05D008328 6.0e-70 268.5 294 52.4
Atru.chr3.2327 Acer truncatum HOM05D006726 ORTHO05D008328 7.9e-70 268.1 301 51.8
Cpa.g.sc119.74 Carica papaya HOM05D006726 ORTHO05D008328 1.0e-69 267.7 297 53.2
Gohir.D08G021900 Gossypium hirsutum HOM05D006726 ORTHO05D008328 1.3e-69 267.3 293 52.6
Gorai.004G017200 Gossypium raimondii HOM05D006726 ORTHO05D008328 3.0e-69 266.2 293 52.6
Lj4g0004177 Lotus japonicus HOM05D006726 ORTHO05D008328 6.7e-69 265.0 306 50.7
Potri.003G218100 Populus trichocarpa HOM05D006726 ORTHO05D008328 8.7e-69 264.6 299 51.5
COL.COLO4_35015 Corchorus olitorius HOM05D006726 ORTHO05D008328 1.5e-68 263.8 302 55.3
Actinidia06849 Actinidia chinensis HOM05D006726 ORTHO05D008328 4.3e-68 262.3 303 52.8
Ca_17954_v3 Cicer arietinum L. HOM05D006726 ORTHO05D008328 7.4e-68 261.5 299 50.8
GSVIVG01025422001 Vitis vinifera HOM05D006726 ORTHO05D008328 9.6e-68 261.2 303 52.5
Prupe.6G006700 Prunus persica HOM05D006726 ORTHO05D008328 2.1e-67 260.0 301 51.8
RcHm_v2.0_Chr5g0082841 Rosa chinensis HOM05D006726 ORTHO05D008328 2.8e-67 259.6 297 50.5
Medtr8g085620 Medicago truncatula HOM05D006726 ORTHO05D008328 4.8e-67 258.8 299 48.8
Glyma.05G155400 Glycine max HOM05D006726 ORTHO05D008328 6.2e-67 258.5 306 49.0
MD03G1007100 Malus domestica HOM05D006726 ORTHO05D008328 2.4e-66 256.5 296 51.4
vmacro04222 Vaccinium macrocarpon HOM05D006726 ORTHO05D008328 2.4e-66 256.5 304 52.0
Glyma.08G113300 Glycine max HOM05D006726 ORTHO05D008328 5.3e-66 255.4 305 49.2
Dinv13438 Davidia involucrata HOM05D006726 ORTHO05D008328 6.9e-66 255.0 301 51.8
CiPaw.13G175000 Carya illinoinensis HOM05D006726 ORTHO05D008328 1.2e-65 254.2 307 49.5
FvH4_3g45230 Fragaria vesca HOM05D006726 ORTHO05D008328 1.2e-65 254.2 296 51.7
Psat7g073840 Pisum sativum HOM05D006726 ORTHO05D008328 1.5e-65 253.8 296 48.3
TPR.G24412 Trifolium pratense HOM05D006726 ORTHO05D008328 1.5e-65 253.8 299 48.5
VMungo0251G2876 Vigna mungo HOM05D006726 ORTHO05D008328 2.0e-65 253.4 306 47.7
PGR119G2317 Punica granatum HOM05D006726 ORTHO05D008328 2.6e-65 253.1 295 51.5
QL01p008136 Quercus lobata HOM05D006726 ORTHO05D008328 3.4e-65 252.7 306 49.7
Phvul.002G235500 Phaseolus vulgaris HOM05D006726 ORTHO05D008328 4.5e-65 252.3 305 47.9
Sabra03G0162700 Salix brachista HOM05D006726 ORTHO05D008328 4.5e-65 252.3 299 49.2
FAN11G1313 Fragaria x ananassa HOM05D006726 ORTHO05D008328 5.8e-65 251.9 292 52.1
Manes.03G084600 Manihot esculenta HOM05D006726 ORTHO05D008328 1.0e-64 251.1 300 50.7
TAR636G2476 Trochodendron aralioides HOM05D006726 ORTHO05D008328 1.3e-64 250.8 306 49.0
TWI34G0208 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 1.7e-64 250.4 305 45.6
TWI34G0698 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 1.7e-64 250.4 305 45.6
Aa31LG10G1050 Aethionema arabicum HOM05D006726 ORTHO05D008328 2.2e-64 250.0 230 62.6
FAN21G0710 Fragaria x ananassa HOM05D006726 ORTHO05D008328 2.2e-64 250.0 297 50.2
Duzib170G1137 Durio zibethinus HOM05D006726 ORTHO05D008328 2.9e-64 249.6 303 51.8
FAN16G2093 Fragaria x ananassa HOM05D006726 ORTHO05D008328 2.9e-64 249.6 297 50.2
FAN25G0869 Fragaria x ananassa HOM05D006726 ORTHO05D008328 4.9e-64 248.8 297 50.5
Haze_22974 Corylus avellana HOM05D006726 ORTHO05D008328 2.5e-63 246.5 311 49.5
Lalb_Chr07g0186641 Lupinus albus HOM05D006726 ORTHO05D008328 3.2e-63 246.1 299 48.8
PSO339G4123 Papaver somniferum HOM05D006726 ORTHO05D008328 4.2e-63 245.7 300 51.3
CSS0004752 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 9.3e-63 244.6 307 48.9
arahy.Tifrunner.gnm1.ann1.GT4ACT Arachis hypogaea HOM05D006726 ORTHO05D008328 2.1e-62 243.4 306 47.4
Rhsim13G0230700 Rhododendron simsii HOM05D006726 ORTHO05D008328 2.1e-62 243.4 302 48.3
arahy.Tifrunner.gnm1.ann1.FL4TQK Arachis hypogaea HOM05D006726 ORTHO05D008328 3.5e-62 242.7 306 46.7
Sed0027506 Sechium edule HOM05D006726 ORTHO05D008328 3.5e-62 242.7 300 48.7
MELO3C015045.2 Cucumis melo HOM05D006726 ORTHO05D008328 7.9e-62 241.5 301 47.8
Lj2C718T3 Lonicera japonica HOM05D006726 ORTHO05D008328 2.3e-61 240.0 303 48.5
Hund07578 Selenicereus undatus HOM05D006726 ORTHO05D008328 6.7e-61 238.4 290 46.6
AUR62019186 Chenopodium quinoa HOM05D006726 ORTHO05D008328 1.1e-60 237.7 301 46.8
MSTRG.18868 Avicennia marina HOM05D006726 ORTHO05D008328 1.5e-60 237.3 304 45.1
Aqoxy1G00428 Aquilegia oxysepala HOM05D006726 ORTHO05D008328 1.9e-60 236.9 301 48.5
Migut.D02543 Erythranthe guttata HOM05D006726 ORTHO05D008328 1.9e-60 236.9 291 47.8
Solyc01g005930.3 Solanum lycopersicum HOM05D006726 ORTHO05D008328 2.5e-60 236.5 303 46.5
ClCG03G012030 Citrullus lanatus HOM05D006726 ORTHO05D008328 7.4e-60 235.0 302 45.7
Eucgr.J01803 Eucalyptus grandis HOM05D006726 ORTHO05D008328 2.1e-59 233.4 301 48.2
PGSC0003DMG400032136 Solanum tuberosum HOM05D006726 ORTHO05D008328 2.1e-59 233.4 304 44.4
Thecc.09G210400 Theobroma cacao HOM05D006726 ORTHO05D008328 3.7e-59 232.6 276 52.2
CAN.G158.14 Capsicum annuum HOM05D006726 ORTHO05D008328 1.1e-58 231.1 301 45.5
EL10Ac4g10360 Beta vulgaris HOM05D006726 ORTHO05D008328 1.4e-58 230.7 304 45.1
Cc01_g02530 Coffea canephora HOM05D006726 ORTHO05D008328 1.8e-58 230.3 307 47.6
HanXRQChr13g0405181 Helianthus annuus HOM05D006726 ORTHO05D008328 3.1e-58 229.6 293 47.8
Peaxi162Scf00100g00318 Petunia axillaris HOM05D006726 ORTHO05D008328 3.1e-58 229.6 304 44.1
CsaV3_1G043900 Cucumis sativus L. HOM05D006726 ORTHO05D008328 5.3e-58 228.8 296 47.3
Nitab4.5_0000775g0040 Nicotiana tabacum HOM05D006726 ORTHO05D008328 5.3e-58 228.8 301 45.5
ECA233G4338 Erigeron canadensis HOM05D006726 ORTHO05D008328 6.9e-58 228.4 294 46.9
PSO384G1418 Papaver somniferum HOM05D006726 ORTHO05D008328 9.0e-58 228.0 299 48.5
Lsat_1_v5_gn_6_52180 Lactuca sativa HOM05D006726 ORTHO05D008328 1.2e-57 227.6 287 48.1
Sopen01g001940 Solanum pennellii HOM05D006726 ORTHO05D008328 3.4e-57 226.1 303 44.6
Sc09g0000200 Simmondsia chinensis HOM05D006726 ORTHO05D008328 7.6e-57 224.9 304 47.4
SalBow6G1149 Salvia bowleyana HOM05D006726 ORTHO05D008328 2.3e-53 213.4 284 44.7
SGA_v2.0_scaffold6G03420 Striga asiatica HOM05D006726 ORTHO05D008328 3.9e-53 212.6 287 45.3
BcaC01g01511 Brassica carinata HOM05D006726 ORTHO05D008328 5.1e-53 212.2 153 77.8
Nitab4.5_0001059g0100 Nicotiana tabacum HOM05D006726 ORTHO05D008328 8.7e-53 211.5 302 43.4
ATR0001G014 Amborella trichopoda HOM05D006726 ORTHO05D008328 3.3e-52 209.5 308 44.8
DCAR_026158 Daucus carota HOM05D006726 ORTHO05D008328 7.4e-52 208.4 299 45.8
Actinidia16259 Actinidia chinensis HOM05D006726 ORTHO05D008328 9.0e-50 201.4 299 45.8
AUR62000016 Chenopodium quinoa HOM05D001875 ORTHO05D008328 3.8e-48 196.1 241 46.5
Nn2g15797 Nelumbo nucifera HOM05D006726 ORTHO05D008328 6.1e-46 188.7 225 48.0
Hma1.2p1_0843F.1_g227250 Hydrangea macrophylla HOM05D006726 ORTHO05D008328 3.0e-45 186.4 236 51.3
Os11g0491400 Oryza sativa ssp. japonica HOM05D006726 ORTHO05D008328 2.0e-44 183.7 301 40.2
Zm00001eb169450 Zea mays HOM05D006726 ORTHO05D008328 7.4e-44 181.8 304 41.4
CSS0003958 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 2.2e-43 180.3 237 48.9
CSS0031538 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 2.2e-43 180.3 237 48.9
HPP92_006110 Vanilla planifolia HOM05D006726 ORTHO05D008328 3.1e-42 176.4 297 40.7
MBI01_g14456_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 2.6e-41 173.3 299 42.1
CDE06G2716 Ceratophyllum demersum HOM05D006726 ORTHO05D008328 5.5e-39 165.6 291 39.5
Pp3c13_13690 Physcomitrium patens HOM05D006726 ORTHO05D008328 1.2e-33 147.9 291 34.4
C03p92600 Brassica napus HOM05D006726 ORTHO05D008328 2.2e-32 143.7 72 95.8
unitig_749.g13586 Utricularia gibba HOM05D006726 ORTHO05D008328 2.0e-25 120.6 175 44.6
Mapoly0036s0044 Marchantia polymorpha HOM05D006726 ORTHO05D008328 5.0e-24 115.9 333 31.2
MBI01_g46956_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 5.5e-23 112.5 135 47.4
SMO268G0018 Selaginella moellendorffii HOM05D006726 ORTHO05D008328 2.6e-20 103.6 276 31.2
CSS0027573 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 4.4e-20 102.8 233 35.6
CDE08G1235 Ceratophyllum demersum HOM05D004967 ORTHO05D006146 7.5e-20 102.1 204 39.2
AagrBONN_evm.TU.Sc2ySwM_368.685 Anthoceros agrestis HOM05D006726 ORTHO05D008328 5.4e-18 95.9 305 30.2
MBI01_g46957_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 4.0e-13 79.7 126 42.1
CSS0014249 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 9.8e-12 75.1 72 51.4
CSS0044208 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 9.8e-12 75.1 72 51.4
Cre09.g400997 Chlamydomonas reinhardtii HOM05D006726 ORTHO05D008328 1.7e-08 64.3 191 27.2
unitig_749.g13585 Utricularia gibba HOM05D006726 ORTHO05D008328 8.0e-06 55.5 67 40.3


User provided reference genes

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