Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 4.5e-75 285.0 207 100.0
BraA07t27814Z Brassica rapa HOM05D003899 ORTHO05D003655 7.0e-44 181.4 201 78.6
Sp1g41920 Schrenkiella parvula HOM05D003899 ORTHO05D003655 1.2e-43 180.6 220 72.3
AL1G64600 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 9.5e-41 171.0 207 71.5
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 2.8e-40 169.5 206 70.9
Carub.0001s4477 Capsella rubella HOM05D003899 ORTHO05D003655 6.1e-40 168.3 214 71.5
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 2.3e-39 166.4 207 69.6
BcaC06g36741 Brassica carinata HOM05D003899 ORTHO05D003655 5.2e-39 165.2 223 70.0
BolC7t40496H Brassica oleracea HOM05D003899 ORTHO05D003655 5.2e-39 165.2 223 70.0
C07p00500 Brassica napus HOM05D003899 ORTHO05D003655 3.5e-35 152.5 208 69.7
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 1.1e-31 141.0 207 67.1
THA.LOC104800071 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 2.9e-21 106.3 87 62.1
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 1.1e-20 104.4 109 49.5
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 7.1e-20 101.7 107 47.7
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 1.2e-19 100.9 107 47.7
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 4.6e-19 99.0 103 48.5
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 6.0e-19 98.6 104 48.1
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 7.3e-17 91.7 109 45.0
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.4e-15 87.4 109 45.0
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 1.8e-15 87.0 107 47.7
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 2.4e-15 86.7 107 45.8
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 4.0e-15 85.9 107 41.1
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 5.2e-15 85.5 75 53.3
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 5.2e-15 85.5 106 45.3
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 2.6e-14 83.2 88 46.6
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 2.6e-14 83.2 75 52.0
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 2.6e-14 83.2 75 50.7
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 2.6e-14 83.2 75 50.7
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 3.4e-14 82.8 99 39.4
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 5.8e-14 82.0 104 45.2
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 9.9e-14 81.3 81 53.1
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 1.7e-13 80.5 111 45.0
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 2.2e-13 80.1 113 41.6
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 2.2e-13 80.1 113 41.6
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 3.8e-13 79.3 85 48.2
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 6.4e-13 78.6 87 51.7
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 6.4e-13 78.6 96 41.7
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 8.4e-13 78.2 87 51.7
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 8.4e-13 78.2 110 42.7
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 2.4e-12 76.6 109 38.5
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 4.2e-12 75.9 88 50.0
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 4.2e-12 75.9 71 50.7
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 4.2e-12 75.9 108 39.8
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 5.4e-12 75.5 76 46.1
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 5.4e-12 75.5 88 50.0
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 5.4e-12 75.5 71 50.7
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 7.1e-12 75.1 95 41.1
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 7.1e-12 75.1 76 46.1
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 7.1e-12 75.1 108 39.8
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 9.2e-12 74.7 71 49.3
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 9.2e-12 74.7 71 49.3
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 1.6e-11 73.9 96 45.8
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 2.1e-11 73.6 82 43.9
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 2.7e-11 73.2 81 46.9
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 2.7e-11 73.2 95 46.3
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 4.6e-11 72.4 82 40.2
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 6.0e-11 72.0 110 41.8
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 6.0e-11 72.0 85 43.5
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 6.0e-11 72.0 81 38.3
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.0e-10 71.2 109 44.0
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.0e-10 71.2 109 44.0
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 1.0e-10 71.2 72 45.8
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 1.3e-10 70.9 120 36.7
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.3e-10 70.9 81 39.5
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 1.7e-10 70.5 105 39.0
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.7e-10 70.5 83 41.0
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 3.0e-10 69.7 88 42.0
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 3.0e-10 69.7 58 46.6
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 5.1e-10 68.9 74 51.4
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 5.1e-10 68.9 81 43.2
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 6.6e-10 68.6 90 42.2
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 6.6e-10 68.6 73 42.5
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 6.6e-10 68.6 61 54.1
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 8.7e-10 68.2 75 42.7
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 8.7e-10 68.2 99 38.4
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 1.1e-09 67.8 111 35.1
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 2.5e-09 66.6 113 34.5
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 3.3e-09 66.2 83 41.0
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 4.3e-09 65.9 109 40.4
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 4.3e-09 65.9 75 41.3
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 5.6e-09 65.5 104 37.5
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 5.6e-09 65.5 75 46.7
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 7.3e-09 65.1 73 46.6
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 9.6e-09 64.7 73 43.8
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 9.6e-09 64.7 73 45.2
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 1.2e-08 64.3 73 45.2
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 1.2e-08 64.3 73 45.2
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 1.2e-08 64.3 73 45.2
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.6e-08 63.9 79 40.5
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 2.1e-08 63.5 84 39.3
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 2.1e-08 63.5 70 42.9
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 2.8e-08 63.2 61 55.7
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 3.6e-08 62.8 73 43.8
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 3.6e-08 62.8 73 43.8
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 3.6e-08 62.8 81 38.3
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 3.6e-08 62.8 111 37.8
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 3.6e-08 62.8 81 38.3
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 4.7e-08 62.4 82 37.8
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 4.7e-08 62.4 89 39.3
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 6.2e-08 62.0 87 40.2
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 8.1e-08 61.6 86 36.0
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 1.1e-07 61.2 85 38.8
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 1.1e-07 61.2 57 49.1
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 1.1e-07 61.2 73 43.8
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 1.4e-07 60.8 81 40.7
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 1.4e-07 60.8 82 36.6
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 1.8e-07 60.5 73 42.5
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 1.8e-07 60.5 73 42.5
Peaxi162Scf00263g00033 Petunia axillaris HOM05D003899 ORTHO05D003655 1.8e-07 60.5 73 42.5
Sc16g0003890 Simmondsia chinensis HOM05D003899 ORTHO05D003655 2.4e-07 60.1 101 40.6
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 3.1e-07 59.7 78 39.7
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 3.1e-07 59.7 111 36.0
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 3.1e-07 59.7 100 34.0
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 6.9e-07 58.5 82 36.6
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 6.9e-07 58.5 89 39.3
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 9.0e-07 58.2 57 45.6
Migut.M00600 Erythranthe guttata HOM05D003899 ORTHO05D003655 9.0e-07 58.2 82 35.4
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 1.2e-06 57.8 81 39.5
CAN.G833.2 Capsicum annuum HOM05D003899 ORTHO05D003655 2.0e-06 57.0 78 41.0
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 2.0e-06 57.0 70 41.4
Phvul.001G073300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 2.0e-06 57.0 58 43.1
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 2.6e-06 56.6 57 43.9
Ah.05g167520 Amaranthus hybridus HOM05D000219 ORTHO05D000226 4.4e-06 55.8 73 39.7
CSS0000461 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 4.4e-06 55.8 72 40.3
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 4.4e-06 55.8 106 34.9
MELO3C023688.2 Cucumis melo HOM05D003899 ORTHO05D003655 5.8e-06 55.5 75 40.0
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 7.6e-06 55.1 114 32.5
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 7.6e-06 55.1 86 38.4
Glyma.14G122000 Glycine max HOM05D003899 ORTHO05D003655 9.9e-06 54.7 63 41.3


User provided reference genes

Program Settings