Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 4.9e-247 857.4 459 100.0
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 1.9e-230 802.4 463 92.9
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 3.3e-227 791.6 464 92.0
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 4.6e-221 771.2 462 90.3
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 7.3e-219 763.8 464 89.7
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 4.6e-213 744.6 468 87.2
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 1.1e-211 740.0 462 88.1
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 2.1e-210 735.7 462 86.4
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 8.1e-210 733.8 462 84.2
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 2.4e-209 732.3 459 84.5
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 2.9e-207 725.3 459 83.9
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 6.4e-207 724.2 458 83.2
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 3.5e-205 718.4 466 82.2
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 7.4e-203 710.7 462 84.4
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 7.9e-197 690.6 469 80.4
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 6.7e-188 661.0 474 73.2
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 4.1e-185 651.7 474 73.2
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 1.4e-177 626.7 479 70.8
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 7.9e-173 610.9 483 69.8
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 8.2e-170 600.9 481 67.8
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.5e-158 563.5 481 64.4
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 7.2e-158 561.2 467 69.0
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 7.7e-152 541.2 485 60.6
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 8.8e-148 527.7 495 58.2
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.2e-147 527.3 491 58.5
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 1.2e-147 527.3 488 58.0
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 5.7e-147 525.0 491 58.2
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 5.7e-147 525.0 491 58.2
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 2.8e-146 522.7 481 61.3
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 1.4e-145 520.4 488 57.4
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 2.9e-143 512.7 494 57.1
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 2.9e-143 512.7 490 55.9
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 3.8e-143 512.3 486 57.0
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 1.5e-142 510.4 488 56.4
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 7.3e-142 508.1 492 55.7
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 9.5e-142 507.7 486 56.4
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 6.1e-141 505.0 487 56.7
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 1.4e-140 503.8 488 56.8
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 4.0e-140 502.3 499 56.9
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 1.2e-139 500.7 486 55.8
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.4e-139 499.2 494 56.9
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 4.4e-139 498.8 481 57.6
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 5.7e-139 498.4 389 72.5
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 5.7e-139 498.4 457 58.2
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 5.7e-139 498.4 480 57.7
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.7e-138 496.9 456 58.8
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 1.7e-138 496.9 491 57.0
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.8e-137 493.4 500 54.8
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 2.4e-137 493.0 482 55.8
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 4.1e-137 492.3 488 54.5
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 1.1e-134 484.2 499 54.1
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.5e-134 483.8 487 54.0
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 3.3e-134 482.6 487 57.5
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 5.6e-134 481.9 486 56.8
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 9.5e-134 481.1 500 54.6
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.6e-133 480.3 500 56.2
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.1e-133 479.9 495 53.3
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 3.6e-133 479.2 495 55.4
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 6.2e-133 478.4 478 55.0
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 2.3e-132 476.5 486 53.9
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.0e-131 473.4 489 53.4
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.0e-131 473.4 483 53.2
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 2.6e-131 473.0 495 53.7
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 5.8e-131 471.9 489 53.4
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.3e-130 470.7 473 55.0
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.7e-130 470.3 495 52.5
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 2.2e-130 469.9 488 52.7
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.7e-130 469.2 475 53.3
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.7e-130 469.2 471 54.1
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 8.3e-130 468.0 482 53.5
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 5.4e-129 465.3 485 52.4
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.4e-129 465.3 514 50.8
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 2.0e-128 463.4 500 52.0
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 2.7e-128 463.0 483 52.4
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 2.7e-128 463.0 460 56.1
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.7e-128 463.0 454 54.6
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 1.0e-127 461.1 513 54.8
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 2.3e-127 459.9 498 51.2
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.9e-127 459.1 498 51.0
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 8.6e-127 458.0 498 51.2
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.1e-126 457.6 489 54.2
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 1.9e-126 456.8 482 52.3
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 4.3e-126 455.7 488 55.3
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 3.6e-125 452.6 489 51.1
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 6.2e-125 451.8 475 51.8
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 6.2e-125 451.8 443 58.0
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 1.1e-124 451.1 443 57.6
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 1.4e-124 450.7 486 51.9
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.4e-124 450.7 437 56.3
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 4.0e-124 449.1 455 54.7
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 2.6e-123 446.4 488 52.7
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 4.4e-123 445.7 487 50.7
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 4.9e-122 442.2 488 50.4
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 3.2e-121 439.5 488 53.7
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 1.2e-120 437.6 491 53.2
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 1.6e-120 437.2 491 53.8
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 3.5e-120 436.0 486 50.2
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 3.0e-119 433.0 496 49.8
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 3.9e-119 432.6 483 50.5
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 1.5e-118 430.6 426 58.7
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 3.3e-118 429.5 510 49.6
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 1.2e-117 427.6 440 53.9
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 1.4e-116 424.1 485 49.1
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.4e-115 419.1 453 54.7
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 1.7e-114 417.2 486 49.6
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 2.2e-114 416.8 578 44.5
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 3.8e-114 416.0 436 55.7
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 1.1e-113 414.5 443 54.9
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 5.4e-113 412.1 410 55.1
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 2.7e-112 409.8 487 47.8
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 6.0e-112 408.7 510 48.0
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 8.6e-111 404.8 545 45.5
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.1e-110 404.4 485 48.5
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 1.9e-110 403.7 487 50.3
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 3.3e-110 402.9 469 49.0
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.2e-109 401.0 495 47.9
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 6.9e-108 395.2 518 46.5
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.4e-105 386.7 532 44.4
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.2e-105 386.3 532 44.4
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 1.6e-104 384.0 403 50.9
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.5e-102 377.5 454 50.0
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 4.3e-102 375.9 450 49.3
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 4.0e-100 369.4 480 44.4
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 6.9e-100 368.6 443 50.3
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 3.4e-99 366.3 496 45.2
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 2.2e-98 363.6 471 47.8
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 2.9e-98 363.2 470 46.6
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 2.4e-97 360.1 385 50.1
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 4.6e-96 355.9 448 49.8
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 1.1e-89 334.7 484 43.8
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 4.6e-88 329.3 502 43.2
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.0e-87 328.2 446 47.5
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 6.7e-87 325.5 396 52.0
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 7.9e-80 302.0 420 42.6
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 1.6e-77 294.3 217 65.9
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 2.4e-76 290.4 459 39.4
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.1e-76 290.0 487 41.1
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 1.2e-75 288.1 217 65.0
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 5.0e-74 282.7 411 47.0
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 1.6e-72 277.7 485 39.4
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 2.1e-72 277.3 292 49.0
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 4.3e-70 269.6 340 46.2
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 2.2e-69 267.3 291 47.4
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.4e-68 264.6 290 47.6
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 5.3e-68 262.7 223 56.1
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 9.1e-68 261.9 274 48.5
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 2.2e-53 214.2 177 58.8
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 2.5e-41 174.1 257 38.5
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.0e-39 168.7 135 61.5
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 3.0e-39 167.2 258 42.2
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.1e-36 158.7 157 54.8
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 5.4e-36 156.4 232 45.7
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 1.0e-34 152.1 315 36.8
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 6.5e-34 149.4 234 34.2
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 1.7e-29 134.8 186 35.5
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 6.6e-26 122.9 94 59.6
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 1.5e-22 111.7 160 41.9
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 9.2e-20 102.4 84 57.1
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 2.7e-19 100.9 122 50.0
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 2.1e-16 91.3 77 57.1
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.1e-15 89.0 114 46.5
BolC1t02302H Brassica oleracea HOM05D026626 ORTHO05D027483 3.2e-12 77.4 138 40.6
C01p23590 Brassica napus HOM05D026626 ORTHO05D027483 7.0e-12 76.3 138 39.9
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 9.2e-12 75.9 90 48.9
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 6.2e-08 63.2 50 58.0
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 1.2e-06 58.9 54 50.0
BcaB05g22404 Brassica carinata HOM05D026626 ORTHO05D027483 7.5e-06 56.2 124 33.9


User provided reference genes

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