Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g16716 Brassica carinata HOM05D006498 ORTHO05D006377 3.2e-145 518.8 356 100.0
C07p03100 Brassica napus HOM05D006498 ORTHO05D006377 4.5e-115 418.7 357 81.8
BolC7t40702H Brassica oleracea HOM05D006498 ORTHO05D006377 1.3e-114 417.2 357 80.7
BcaC06g36544 Brassica carinata HOM05D006498 ORTHO05D006377 1.4e-113 413.7 357 81.0
A07p01520 Brassica napus HOM05D006498 ORTHO05D006377 7.9e-112 407.9 368 79.6
BraA07t27953Z Brassica rapa HOM05D006498 ORTHO05D006377 9.7e-110 401.0 366 80.9
Sp3g32630 Schrenkiella parvula HOM05D006498 ORTHO05D006377 1.3e-101 374.0 388 74.2
Thhalv10022749m.g Eutrema salsugineum HOM05D006498 ORTHO05D006377 3.5e-99 365.9 377 70.3
AL3G49020 Arabidopsis lyrata HOM05D006498 ORTHO05D006377 6.3e-93 345.1 375 63.7
CARHR109730 Cardamine hirsuta HOM05D006498 ORTHO05D006377 3.1e-92 342.8 377 68.7
AT2G19270 Arabidopsis thaliana HOM05D006498 ORTHO05D006377 1.6e-91 340.5 374 62.8
Carub.0003s3350 Capsella rubella HOM05D006498 ORTHO05D006377 1.1e-89 334.3 375 70.9
Aa31LG8G16310 Aethionema arabicum HOM05D006498 ORTHO05D006377 2.1e-80 303.5 375 66.4
THA.LOC104820009 Tarenaya hassleriana HOM05D006498 ORTHO05D006377 2.1e-64 250.4 416 51.0
FAN17G1293 Fragaria x ananassa HOM05D006498 ORTHO05D006377 5.8e-46 189.1 293 50.5
FvH4_4g07150 Fragaria vesca HOM05D006498 ORTHO05D006377 3.7e-45 186.4 301 51.2
FAN12G3360 Fragaria x ananassa HOM05D006498 ORTHO05D006377 3.7e-45 186.4 296 50.7
VMungo1215G1417 Vigna mungo HOM05D006498 ORTHO05D006377 3.7e-45 186.4 310 48.7
HanXRQChr07g0190541 Helianthus annuus HOM05D006498 ORTHO05D006377 1.1e-44 184.9 237 51.1
TWI32G0168 Tripterygium wilfordii HOM05D006498 ORTHO05D006377 2.4e-44 183.7 383 47.0
Duzib150G1211 Durio zibethinus HOM05D006498 ORTHO05D006377 7.1e-44 182.2 341 45.2
Gohir.A13G208200 Gossypium hirsutum HOM05D006498 ORTHO05D006377 7.1e-44 182.2 329 45.0
SalBow3G4321 Salvia bowleyana HOM05D006498 ORTHO05D006377 2.7e-43 180.3 330 46.1
Dinv28799 Davidia involucrata HOM05D006498 ORTHO05D006377 7.8e-43 178.7 252 49.2
Gohir.D13G212600 Gossypium hirsutum HOM05D006498 ORTHO05D006377 1.0e-42 178.3 329 44.4
Gorai.013G243000 Gossypium raimondii HOM05D006498 ORTHO05D006377 1.0e-42 178.3 329 44.4
arahy.Tifrunner.gnm1.ann1.YNM2K2 Arachis hypogaea HOM05D006498 ORTHO05D006377 1.3e-42 177.9 328 48.2
Atru.chr7.955 Acer truncatum HOM05D006498 ORTHO05D006377 1.7e-42 177.6 261 46.7
Manes.14G159400 Manihot esculenta HOM05D006498 ORTHO05D006377 3.9e-42 176.4 314 45.9
Hma1.2p1_0491F.1_g164630 Hydrangea macrophylla HOM05D006498 ORTHO05D006377 1.1e-41 174.9 296 46.6
CSS0012471 Camellia sinensis var. sinensis HOM05D006498 ORTHO05D006377 1.5e-41 174.5 299 44.1
Eucgr.C00107 Eucalyptus grandis HOM05D006498 ORTHO05D006377 1.5e-41 174.5 303 49.5
TWI34G1139 Tripterygium wilfordii HOM05D006498 ORTHO05D006377 1.9e-41 174.1 393 42.0
Phvul.003G140900 Phaseolus vulgaris HOM05D006498 ORTHO05D006377 2.5e-41 173.7 301 48.8
Aqoxy7G02850 Aquilegia oxysepala HOM05D006498 ORTHO05D006377 3.3e-41 173.3 310 44.2
CANSAT11G0487 Cannabis sativa HOM05D006498 ORTHO05D006377 2.1e-40 170.6 301 50.2
arahy.Tifrunner.gnm1.ann1.XIUU7W Arachis hypogaea HOM05D006498 ORTHO05D006377 1.1e-39 168.3 324 47.2
Ca_21256_v3 Cicer arietinum L. HOM05D006498 ORTHO05D006377 1.1e-39 168.3 295 48.5
Migut.N00676 Erythranthe guttata HOM05D006498 ORTHO05D006377 1.1e-39 168.3 296 48.3
Cc01_g15950 Coffea canephora HOM05D006498 ORTHO05D006377 1.4e-39 167.9 335 44.5
Glyma.13G101000 Glycine max HOM05D006498 ORTHO05D006377 1.8e-39 167.5 296 50.0
CiPaw.07G197600 Carya illinoinensis HOM05D006498 ORTHO05D006377 2.4e-39 167.2 225 48.9
Actinidia23350 Actinidia chinensis HOM05D006498 ORTHO05D006377 5.2e-39 166.0 351 42.2
Potri.006G075000 Populus trichocarpa HOM05D006498 ORTHO05D006377 5.2e-39 166.0 309 46.6
Lj4g0022386 Lotus japonicus HOM05D006498 ORTHO05D006377 6.8e-39 165.6 294 48.0
Ciclev10008415m.g Citrus clementina HOM05D006498 ORTHO05D006377 8.9e-39 165.2 319 47.0
Nitab4.5_0000038g0230 Nicotiana tabacum HOM05D006498 ORTHO05D006377 1.2e-38 164.9 364 44.8
Sed0023189 Sechium edule HOM05D006498 ORTHO05D006377 2.0e-38 164.1 325 47.4
Medtr4g127350 Medicago truncatula HOM05D006498 ORTHO05D006377 2.6e-38 163.7 300 46.0
Thecc.09G186800 Theobroma cacao HOM05D006498 ORTHO05D006377 1.7e-37 161.0 321 43.9
Haze_22031 Corylus avellana HOM05D006498 ORTHO05D006377 2.9e-37 160.2 320 44.4
Lsat_1_v5_gn_9_16541 Lactuca sativa HOM05D006498 ORTHO05D006377 2.9e-37 160.2 296 42.9
GSVIVG01029313001 Vitis vinifera HOM05D006498 ORTHO05D006377 2.9e-37 160.2 248 44.8
Sc18g0007220 Simmondsia chinensis HOM05D006498 ORTHO05D006377 4.9e-37 159.5 304 46.4
Prupe.1G074500 Prunus persica HOM05D006498 ORTHO05D006377 6.4e-37 159.1 321 45.2
Nn4g25125 Nelumbo nucifera HOM05D006498 ORTHO05D006377 8.4e-37 158.7 245 48.2
PGR142G3062 Punica granatum HOM05D006498 ORTHO05D006377 8.4e-37 158.7 361 42.7
PGR142G3622 Punica granatum HOM05D006498 ORTHO05D006377 8.4e-37 158.7 361 42.7
Oeu003665.1 Olea europaea HOM05D006498 ORTHO05D006377 1.1e-36 158.3 246 48.8
SGA_v2.0_scaffold95G28702 Striga asiatica HOM05D006498 ORTHO05D006377 1.4e-36 157.9 290 41.7
MD13G1239600 Malus domestica HOM05D006498 ORTHO05D006377 1.9e-36 157.5 270 41.5
Sabra06G0055700 Salix brachista HOM05D006498 ORTHO05D006377 1.9e-36 157.5 379 42.2
FAN22G0654 Fragaria x ananassa HOM05D006498 ORTHO05D006377 2.4e-36 157.1 351 42.2
RcHm_v2.0_Chr4g0399301 Rosa chinensis HOM05D006498 ORTHO05D006377 2.4e-36 157.1 304 47.7
Glyma.17G058700 Glycine max HOM05D006498 ORTHO05D006377 3.2e-36 156.8 299 46.8
PSO063G6554 Papaver somniferum HOM05D006498 ORTHO05D006377 3.2e-36 156.8 304 45.4
MELO3C017425.2 Cucumis melo HOM05D006498 ORTHO05D006377 4.2e-36 156.4 371 41.2
Sopen09g019810 Solanum pennellii HOM05D006498 ORTHO05D006377 4.2e-36 156.4 311 45.7
Nitab4.5_0005686g0030 Nicotiana tabacum HOM05D006498 ORTHO05D006377 9.3e-36 155.2 310 45.2
Psat0s3389g0200 Pisum sativum HOM05D006498 ORTHO05D006377 9.3e-36 155.2 249 45.0
unitig_60.g25575 Utricularia gibba HOM05D006498 ORTHO05D006377 1.6e-35 154.5 332 38.0
PSO170G2385 Papaver somniferum HOM05D006498 ORTHO05D006377 4.6e-35 152.9 310 45.5
Peaxi162Scf00235g00219 Petunia axillaris HOM05D006498 ORTHO05D006377 4.6e-35 152.9 293 45.7
ClCG06G013640 Citrullus lanatus HOM05D006498 ORTHO05D006377 6.0e-35 152.5 328 45.1
CsaV3_1G031910 Cucumis sativus L. HOM05D006498 ORTHO05D006377 1.0e-34 151.8 367 42.5
DCAR_004773 Daucus carota HOM05D006498 ORTHO05D006377 1.3e-34 151.4 319 41.1
MSTRG.17962 Avicennia marina HOM05D006498 ORTHO05D006377 2.3e-34 150.6 319 39.2
CAN.G844.1 Capsicum annuum HOM05D006498 ORTHO05D006377 2.3e-34 150.6 298 45.6
MBI16_g05840_MAGBIO Magnolia biondii HOM05D006498 ORTHO05D006377 3.9e-34 149.8 100 76.0
Lj2A1114T36 Lonicera japonica HOM05D006498 ORTHO05D006377 5.1e-34 149.4 313 40.3
Cfa013457 Carpinus fangiana HOM05D006498 ORTHO05D006377 8.7e-34 148.7 253 44.7
AUR62025173 Chenopodium quinoa HOM05D006498 ORTHO05D006377 1.9e-33 147.5 233 47.2
Hma1.2p1_0491F.1_g164640 Hydrangea macrophylla HOM05D006498 ORTHO05D006377 7.3e-33 145.6 96 74.0
CDE05G1404 Ceratophyllum demersum HOM05D006498 ORTHO05D006377 1.1e-31 141.7 286 43.7
Lsat_1_v5_gn_3_41001 Lactuca sativa HOM05D006498 ORTHO05D006377 1.8e-31 141.0 97 73.2
Os02g0175900 Oryza sativa ssp. japonica HOM05D006498 ORTHO05D006377 2.4e-31 140.6 125 60.0
EL10Ac8g19141 Beta vulgaris HOM05D006498 ORTHO05D006377 3.1e-31 140.2 214 44.4
Lalb_Chr12g0199631 Lupinus albus HOM05D006498 ORTHO05D006377 4.0e-31 139.8 96 68.8
Lsat_1_v5_gn_4_158461 Lactuca sativa HOM05D006498 ORTHO05D006377 4.5e-30 136.3 118 61.0
ATR0626G368 Amborella trichopoda HOM05D006498 ORTHO05D006377 5.8e-30 136.0 246 43.5
Lsat_1_v5_gn_7_52821 Lactuca sativa HOM05D006498 ORTHO05D006377 5.8e-30 136.0 112 63.4
ECA247G1929 Erigeron canadensis HOM05D000109 ORTHO05D006377 2.2e-29 134.0 295 38.0
Zm00001eb233520 Zea mays HOM05D006498 ORTHO05D006377 4.9e-29 132.9 162 52.5
HPP92_011644 Vanilla planifolia HOM05D006498 ORTHO05D006377 8.4e-29 132.1 307 40.7
Rhsim13G0054400 Rhododendron simsii HOM05D006498 ORTHO05D006377 5.4e-28 129.4 333 35.4
Zm00001eb206900 Zea mays HOM05D006498 ORTHO05D006377 5.4e-28 129.4 233 41.2
Lsat_1_v5_gn_9_15580 Lactuca sativa HOM05D006498 ORTHO05D006377 2.1e-27 127.5 93 68.8
Lsat_1_v5_gn_5_22180 Lactuca sativa HOM05D006498 ORTHO05D006377 4.6e-27 126.3 95 67.4
vmacro02834 Vaccinium macrocarpon HOM05D006498 ORTHO05D006377 2.5e-25 120.6 418 34.2
Mapoly0001s0081 Marchantia polymorpha HOM05D006498 ORTHO05D006377 4.3e-25 119.8 99 61.6
Actinidia30000 Actinidia chinensis HOM05D006498 ORTHO05D006377 3.1e-23 113.6 226 45.1
CDE05G1079 Ceratophyllum demersum HOM05D006498 ORTHO05D006377 1.5e-22 111.3 77 74.0
Cpa.g.sc2680.1 Carica papaya HOM05D006498 ORTHO05D006377 4.5e-22 109.8 262 46.6
Pp3c15_6280 Physcomitrium patens HOM05D006498 ORTHO05D006377 2.2e-21 107.5 98 60.2
AagrBONN_evm.TU.Sc2ySwM_228.1455 Anthoceros agrestis HOM05D006498 ORTHO05D006377 6.4e-21 105.9 236 37.3
SMO361G0453 Selaginella moellendorffii HOM05D006498 ORTHO05D006377 7.9e-19 99.0 238 34.9
COL.COLO4_06397 Corchorus olitorius HOM05D006498 ORTHO05D006377 6.7e-18 95.9 65 73.8
Lalb_Chr13g0299941 Lupinus albus HOM05D006498 ORTHO05D006377 1.1e-17 95.1 245 34.7
Solyc09g055870.2 Solanum lycopersicum HOM05D006498 ORTHO05D006377 1.3e-16 91.7 265 39.6
Lsat_1_v5_gn_4_108221 Lactuca sativa HOM05D006498 ORTHO05D006377 4.8e-16 89.7 60 73.3
CBR_g12030 Chara braunii HOM05D006498 ORTHO05D006377 8.1e-16 89.0 154 39.6
Ah.09g231280 Amaranthus hybridus HOM05D006498 ORTHO05D006377 1.1e-15 88.6 335 39.1
QL02p046691 Quercus lobata HOM05D006498 ORTHO05D000004 2.6e-14 84.0 173 38.7
QL02p046697 Quercus lobata HOM05D006498 ORTHO05D006377 2.2e-13 80.9 50 78.0
Lalb_Chr13g0299961 Lupinus albus HOM05D006498 ORTHO05D006377 8.4e-13 79.0 51 74.5
SHI03076 Sapria himalayana HOM05D006498 ORTHO05D006377 1.9e-12 77.8 51 72.5
Solyc09g055850.3 Solanum lycopersicum HOM05D006498 ORTHO05D006377 9.3e-12 75.5 51 72.5
SGA_v2.0_scaffold95G28701 Striga asiatica HOM05D006498 ORTHO05D006377 6.0e-11 72.8 77 51.9
Sed0023288 Sechium edule HOM05D006498 ORTHO05D006377 8.2e-08 62.4 219 33.8


User provided reference genes

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