Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g16714 Brassica carinata HOM05D003176 ORTHO05D018565 2.1e-107 392.5 212 100.0
A07p01540 Brassica napus HOM05D003176 ORTHO05D018565 4.3e-57 225.3 244 61.1
BraA07t27955Z Brassica rapa HOM05D003176 ORTHO05D018565 4.3e-57 225.3 244 61.1
Sp3g32610 Schrenkiella parvula HOM05D003176 ORTHO05D004011 2.4e-39 166.4 278 45.0
AT2G19240 Arabidopsis thaliana HOM05D003176 ORTHO05D004011 9.4e-36 154.5 275 45.1
BraA01t00762Z Brassica rapa HOM05D003176 ORTHO05D004011 3.5e-30 136.0 241 45.6
Sp7g27760 Schrenkiella parvula HOM05D003176 ORTHO05D004011 7.7e-30 134.8 242 45.0
CARHR109700 Cardamine hirsuta HOM05D003176 ORTHO05D004011 1.3e-29 134.0 291 40.2
A01p08150 Brassica napus HOM05D003176 ORTHO05D004011 6.5e-29 131.7 239 45.6
Carub.0003s3347 Capsella rubella HOM05D003176 ORTHO05D004011 3.6e-27 125.9 261 41.8
BcaC09g51765 Brassica carinata HOM05D003176 ORTHO05D004011 1.0e-26 124.4 241 43.6
C01p09120 Brassica napus HOM05D003176 ORTHO05D004011 1.0e-26 124.4 241 43.6
BolC1t00903H Brassica oleracea HOM05D003176 ORTHO05D004011 1.0e-26 124.4 241 43.6
CARHR237870 Cardamine hirsuta HOM05D003176 ORTHO05D004011 1.4e-26 124.0 252 40.9
THA.LOC104814653 Tarenaya hassleriana HOM05D003176 ORTHO05D004011 3.0e-26 122.9 253 41.5
Carub.0007s1069 Capsella rubella HOM05D003176 ORTHO05D004011 8.5e-21 104.8 262 38.9
AT4G29950 Arabidopsis thaliana HOM05D003176 ORTHO05D004011 1.5e-17 94.0 113 50.4
AL7G22290 Arabidopsis lyrata HOM05D003176 ORTHO05D004011 4.4e-17 92.4 113 50.4
THA.LOC104820008 Tarenaya hassleriana HOM05D003176 ORTHO05D004011 7.5e-17 91.7 247 36.0
CiPaw.07G196500 Carya illinoinensis HOM05D003176 ORTHO05D004011 9.2e-15 84.7 235 36.2
AT2G19230 Arabidopsis thaliana HOM05D000106 ORTHO05D000160 2.7e-14 83.2 149 42.3
Thhalv10024395m.g Eutrema salsugineum HOM05D003176 ORTHO05D004011 2.3e-13 80.1 188 39.9
Aa31LG8G16270 Aethionema arabicum HOM05D003176 ORTHO05D004011 2.9e-13 79.7 338 30.2
Sed0012562 Sechium edule HOM05D003176 ORTHO05D004011 8.6e-13 78.2 237 35.0
TWI32G0804 Tripterygium wilfordii HOM05D003176 ORTHO05D004011 1.9e-12 77.0 228 35.5
Ciclev10007458m.g Citrus clementina HOM05D003176 ORTHO05D004011 4.3e-12 75.9 247 36.4
C07p03190 Brassica napus HOM05D003176 ORTHO05D004011 9.5e-12 74.7 59 69.5
BolC7t40717H Brassica oleracea HOM05D003176 ORTHO05D004011 9.5e-12 74.7 59 69.5
ClCG11G011790 Citrullus lanatus HOM05D003176 ORTHO05D004011 9.5e-12 74.7 237 35.0
Potri.006G076000 Populus trichocarpa HOM05D003176 ORTHO05D004011 6.1e-11 72.0 228 34.6
Potri.018G143100 Populus trichocarpa HOM05D003176 ORTHO05D004011 6.1e-11 72.0 240 35.0
Sabra18G0116900 Salix brachista HOM05D003176 ORTHO05D004011 6.1e-11 72.0 223 35.9
Prupe.1G076400 Prunus persica HOM05D003176 ORTHO05D004011 8.0e-11 71.6 225 36.0
Sabra06G0056800 Salix brachista HOM05D003176 ORTHO05D004011 8.0e-11 71.6 226 35.0
CsaV3_2G008700 Cucumis sativus L. HOM05D003176 ORTHO05D004011 1.0e-10 71.2 234 35.5
MD13G1242400 Malus domestica HOM05D003176 ORTHO05D004011 1.0e-10 71.2 233 32.6
Cpa.g.c27842.3 Carica papaya HOM05D003176 ORTHO05D004011 2.3e-10 70.1 244 34.4
MELO3C003977.2 Cucumis melo HOM05D003176 ORTHO05D004011 2.3e-10 70.1 230 34.8
Manes.14G157900 Manihot esculenta HOM05D003176 ORTHO05D004011 2.3e-10 70.1 240 34.6
MD16G1249600 Malus domestica HOM05D003176 ORTHO05D004011 4.0e-10 69.3 234 34.6
Sed0013378 Sechium edule HOM05D003176 ORTHO05D004011 4.0e-10 69.3 235 34.5
TWI63G0043 Tripterygium wilfordii HOM05D003176 ORTHO05D004011 4.0e-10 69.3 246 32.5
CANSAT11G0358 Cannabis sativa HOM05D003176 ORTHO05D004011 8.9e-10 68.2 226 34.5
Dinv25436 Davidia involucrata HOM05D003176 ORTHO05D004011 1.2e-09 67.8 234 35.0
Manes.06G020300 Manihot esculenta HOM05D003176 ORTHO05D004011 1.5e-09 67.4 238 34.0
Nitab4.5_0000617g0010 Nicotiana tabacum HOM05D003176 ORTHO05D004011 1.5e-09 67.4 233 33.9
arahy.Tifrunner.gnm1.ann1.LHRZ75 Arachis hypogaea HOM05D003176 ORTHO05D004011 2.0e-09 67.0 241 32.4
Eucgr.C00121 Eucalyptus grandis HOM05D003176 ORTHO05D004011 2.0e-09 67.0 248 33.1
C03p88980 Brassica napus HOM05D003176 ORTHO05D018565 2.6e-09 66.6 98 43.9
C07p03140 Brassica napus HOM05D061393 ORTHO05D040615 5.7e-09 65.5 51 78.4
BolC7t40705H Brassica oleracea HOM05D061393 ORTHO05D040615 5.7e-09 65.5 51 78.4
Thecc.09G185500 Theobroma cacao HOM05D003176 ORTHO05D004011 5.7e-09 65.5 231 33.3
COL.COLO4_08418 Corchorus olitorius HOM05D003176 ORTHO05D004011 7.5e-09 65.1 232 33.6
Lalb_Chr11g0074811 Lupinus albus HOM05D003176 ORTHO05D018565 7.5e-09 65.1 201 36.3
Medtr4g127450 Medicago truncatula HOM05D003176 ORTHO05D004011 7.5e-09 65.1 232 35.3
Duzib168G1099 Durio zibethinus HOM05D003176 ORTHO05D004011 9.8e-09 64.7 232 36.6
Nitab4.5_0003468g0010 Nicotiana tabacum HOM05D003176 ORTHO05D004011 1.7e-08 63.9 232 32.3
arahy.Tifrunner.gnm1.ann1.LRN56Y Arachis hypogaea HOM05D003176 ORTHO05D004011 2.9e-08 63.2 241 32.0
Duzib150G0644 Durio zibethinus HOM05D003176 ORTHO05D004011 2.9e-08 63.2 231 32.5
BcaC06g36542 Brassica carinata HOM05D003176 ORTHO05D018565 3.7e-08 62.8 100 53.0
Medtr2g037930 Medicago truncatula HOM05D003176 ORTHO05D004011 4.9e-08 62.4 82 46.3
CAN.G333.10 Capsicum annuum HOM05D003176 ORTHO05D004011 6.4e-08 62.0 235 32.8
Oeu050216.1 Olea europaea HOM05D003176 ORTHO05D004011 6.4e-08 62.0 123 39.8
Solyc07g008840.3 Solanum lycopersicum HOM05D003176 ORTHO05D004011 6.4e-08 62.0 224 34.8
ATR0626G188 Amborella trichopoda HOM05D003176 ORTHO05D004011 8.3e-08 61.6 63 58.7
Lj6g0011356 Lotus japonicus HOM05D003176 ORTHO05D004011 8.3e-08 61.6 112 38.4
Peaxi162Scf01600g00024 Petunia axillaris HOM05D003176 ORTHO05D004011 8.3e-08 61.6 235 34.5
PGR142G3732 Punica granatum HOM05D003176 ORTHO05D004011 1.4e-07 60.8 237 33.8
Dinv41170 Davidia involucrata HOM05D003176 ORTHO05D004011 2.4e-07 60.1 227 33.5
HanXRQChr03g0068441 Helianthus annuus HOM05D003176 ORTHO05D004011 2.4e-07 60.1 60 53.3
QL02p046513 Quercus lobata HOM05D003176 ORTHO05D004011 2.4e-07 60.1 221 31.7
Sopen07g004770 Solanum pennellii HOM05D003176 ORTHO05D004011 2.4e-07 60.1 232 34.9
Cfa013447 Carpinus fangiana HOM05D003176 ORTHO05D004011 4.1e-07 59.3 232 31.5
Duzib170G0992 Durio zibethinus HOM05D003176 ORTHO05D004011 4.1e-07 59.3 235 33.2
Gohir.D13G213200 Gossypium hirsutum HOM05D003176 ORTHO05D004011 4.1e-07 59.3 237 30.8
GSVIVG01010868001 Vitis vinifera HOM05D003176 ORTHO05D004011 4.1e-07 59.3 151 37.7
Gorai.013G243500 Gossypium raimondii HOM05D003176 ORTHO05D004011 7.0e-07 58.5 237 30.8
Glyma.17G059700 Glycine max HOM05D003176 ORTHO05D004011 1.2e-06 57.8 63 54.0
Rhsim01G0118100 Rhododendron simsii HOM05D003176 ORTHO05D004011 1.6e-06 57.4 124 35.5
Haze_22014 Corylus avellana HOM05D003176 ORTHO05D004011 2.0e-06 57.0 254 31.9
Gohir.A08G080400 Gossypium hirsutum HOM05D003176 ORTHO05D004011 2.0e-06 57.0 231 29.9
Actinidia01280 Actinidia chinensis HOM05D003176 ORTHO05D004011 2.7e-06 56.6 253 30.0
Gorai.004G095300 Gossypium raimondii HOM05D003176 ORTHO05D004011 2.7e-06 56.6 221 30.3
TAR625G0715 Trochodendron aralioides HOM05D003176 ORTHO05D004011 2.7e-06 56.6 246 32.9
Actinidia02504 Actinidia chinensis HOM05D003176 ORTHO05D004011 3.5e-06 56.2 254 30.7
CSS0006331 Camellia sinensis var. sinensis HOM05D003176 ORTHO05D004011 3.5e-06 56.2 127 39.4
PSO063G3607 Papaver somniferum HOM05D003176 ORTHO05D004011 3.5e-06 56.2 119 38.7
Gohir.A13G208800 Gossypium hirsutum HOM05D003176 ORTHO05D004011 5.9e-06 55.5 238 30.3
Gohir.D08G090300 Gossypium hirsutum HOM05D003176 ORTHO05D004011 5.9e-06 55.5 231 29.4
PGR044G1774 Punica granatum HOM05D003176 ORTHO05D004011 5.9e-06 55.5 129 35.7
Atru.chr7.764 Acer truncatum HOM05D003176 ORTHO05D004011 7.8e-06 55.1 256 30.9
Atru.chr7.784 Acer truncatum HOM05D003176 ORTHO05D004011 7.8e-06 55.1 256 30.9
C07p03210 Brassica napus HOM05D001286 ORTHO05D000440 7.8e-06 55.1 49 63.3
SGA_v2.0_scaffold491G52431 Striga asiatica HOM05D003176 ORTHO05D004011 7.8e-06 55.1 232 31.9


User provided reference genes

Program Settings