Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g16675 Brassica carinata HOM05D000300 ORTHO05D000383 1.9e-66 255.8 131 100.0
A07p01810 Brassica napus HOM05D027597 ORTHO05D027794 1.6e-14 83.2 101 48.5
BraA07t27981Z Brassica rapa HOM05D027597 ORTHO05D027794 2.1e-14 82.8 65 61.5
Aa31LG5G1620 Aethionema arabicum HOM05D000300 ORTHO05D000383 6.5e-11 71.2 66 53.0
AT4G01990 Arabidopsis thaliana HOM05D000300 ORTHO05D000383 1.4e-10 70.1 66 56.1
AL6G51260 Arabidopsis lyrata HOM05D000300 ORTHO05D000383 2.5e-10 69.3 66 54.5
BcaB03g15787 Brassica carinata HOM05D000300 ORTHO05D000383 2.5e-10 69.3 187 34.2
Eucgr.H01002 Eucalyptus grandis HOM05D000300 ORTHO05D000383 3.2e-10 68.9 66 54.5
A10p01140 Brassica napus HOM05D000300 ORTHO05D000383 5.5e-10 68.2 186 33.9
Sp1g01450 Schrenkiella parvula HOM05D000300 ORTHO05D000383 5.5e-10 68.2 84 48.8
Manes.01G229000 Manihot esculenta HOM05D000300 ORTHO05D000383 7.2e-10 67.8 66 53.0
Thhalv10007036m.g Eutrema salsugineum HOM05D000300 ORTHO05D000383 9.3e-10 67.4 113 38.9
FvH4_1g27080 Fragaria vesca HOM05D000300 ORTHO05D000383 9.3e-10 67.4 66 51.5
C05p01170 Brassica napus HOM05D000300 ORTHO05D000383 1.6e-09 66.6 183 33.3
BraA10t42393Z Brassica rapa HOM05D000300 ORTHO05D000383 1.6e-09 66.6 84 46.4
Aa31LG1G10000 Aethionema arabicum HOM05D000300 ORTHO05D000383 2.1e-09 66.2 139 33.8
Aa31LG1G9990 Aethionema arabicum HOM05D000300 ORTHO05D000383 2.1e-09 66.2 152 34.2
BcaC05g24618 Brassica carinata HOM05D000300 ORTHO05D000383 2.1e-09 66.2 84 46.4
BolC5t28899H Brassica oleracea HOM05D000300 ORTHO05D000383 2.1e-09 66.2 84 46.4
FAN19G0957 Fragaria x ananassa HOM05D000300 ORTHO05D000383 2.1e-09 66.2 99 41.4
Gorai.004G144700 Gossypium raimondii HOM05D000300 ORTHO05D000383 2.1e-09 66.2 66 53.0
AL1G11720 Arabidopsis lyrata HOM05D000300 ORTHO05D000383 2.7e-09 65.9 195 33.8
BcaC01g06786 Brassica carinata HOM05D000300 ORTHO05D000383 2.7e-09 65.9 66 51.5
C03p38240 Brassica napus HOM05D000300 ORTHO05D000383 2.7e-09 65.9 66 51.5
BolC3t16105H Brassica oleracea HOM05D000300 ORTHO05D000383 2.7e-09 65.9 66 51.5
Haze_05065 Corylus avellana HOM05D000300 ORTHO05D000383 2.7e-09 65.9 66 53.0
AT1G02370 Arabidopsis thaliana HOM05D000300 ORTHO05D000383 3.5e-09 65.5 67 52.2
QL12p019490 Quercus lobata HOM05D000300 ORTHO05D000383 3.5e-09 65.5 66 51.5
Gohir.A08G119700 Gossypium hirsutum HOM05D000300 ORTHO05D000383 4.6e-09 65.1 66 51.5
Gohir.D08G140600 Gossypium hirsutum HOM05D000300 ORTHO05D000383 4.6e-09 65.1 66 51.5
A03p31320 Brassica napus HOM05D000300 ORTHO05D000383 6.1e-09 64.7 66 51.5
BraA03t12314Z Brassica rapa HOM05D000300 ORTHO05D000383 6.1e-09 64.7 66 51.5
SHI29019 Sapria himalayana HOM05D000300 ORTHO05D000383 6.1e-09 64.7 66 51.5
CARHR249690 Cardamine hirsuta HOM05D000300 ORTHO05D000383 1.0e-08 63.9 66 48.5
Cfa005776 Carpinus fangiana HOM05D000300 ORTHO05D000383 1.0e-08 63.9 66 51.5
FAN26G0791 Fragaria x ananassa HOM05D000300 ORTHO05D000383 1.0e-08 63.9 99 40.4
BcaB01g02403 Brassica carinata HOM05D000300 ORTHO05D000383 1.3e-08 63.5 66 50.0
Ciclev10011521m.g Citrus clementina HOM05D000300 ORTHO05D000383 1.3e-08 63.5 67 47.8
FAN23G2691 Fragaria x ananassa HOM05D000300 ORTHO05D000383 1.3e-08 63.5 99 40.4
FAN28G2865 Fragaria x ananassa HOM05D000300 ORTHO05D000383 1.3e-08 63.5 99 40.4
Peaxi162Scf00691g00620 Petunia axillaris HOM05D000300 ORTHO05D000383 1.8e-08 63.2 99 41.4
Sabra14G0088200 Salix brachista HOM05D000300 ORTHO05D000383 1.8e-08 63.2 67 46.3
Dinv33128 Davidia involucrata HOM05D000300 ORTHO05D000383 2.3e-08 62.8 66 47.0
GSVIVG01028139001 Vitis vinifera HOM05D000300 ORTHO05D000383 2.3e-08 62.8 58 53.4
Cfa005777 Carpinus fangiana HOM05D000300 ORTHO05D000383 3.9e-08 62.0 66 51.5
Haze_05059 Corylus avellana HOM05D000300 ORTHO05D000383 3.9e-08 62.0 66 50.0
MSTRG.383 Avicennia marina HOM05D000300 ORTHO05D008589 5.1e-08 61.6 96 40.6
Thhalv10029427m.g Eutrema salsugineum HOM05D000300 ORTHO05D000383 5.1e-08 61.6 66 50.0
Carub.0006s3524 Capsella rubella HOM05D000300 ORTHO05D000383 6.7e-08 61.2 66 50.0
Hma1.2p1_0408F.1_g146590 Hydrangea macrophylla HOM05D000300 ORTHO05D000383 6.7e-08 61.2 66 48.5
Lj2A1207T65 Lonicera japonica HOM05D000300 ORTHO05D000383 6.7e-08 61.2 99 39.4
CARHR001690 Cardamine hirsuta HOM05D000300 ORTHO05D000383 8.7e-08 60.8 190 31.1
GSVIVG01031246001 Vitis vinifera HOM05D000300 ORTHO05D000383 8.7e-08 60.8 94 40.4
CSS0000022 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 1.5e-07 60.1 66 45.5
CiPaw.08G088500 Carya illinoinensis HOM05D000300 ORTHO05D000383 1.5e-07 60.1 61 52.5
DCAR_018288 Daucus carota HOM05D000300 ORTHO05D000383 1.5e-07 60.1 69 42.0
Potri.014G119000 Populus trichocarpa HOM05D000300 ORTHO05D000383 1.5e-07 60.1 89 38.2
Carub.0001s0142 Capsella rubella HOM05D000300 ORTHO05D000383 2.5e-07 59.3 140 33.6
MELO3C017613.2 Cucumis melo HOM05D000300 ORTHO05D000383 2.5e-07 59.3 94 40.4
Potri.002G194400 Populus trichocarpa HOM05D000300 ORTHO05D000383 2.5e-07 59.3 67 43.3
Sed0011619 Sechium edule HOM05D000300 ORTHO05D000383 2.5e-07 59.3 58 55.2
TAR362G0713 Trochodendron aralioides HOM05D000300 ORTHO05D000383 2.5e-07 59.3 66 42.4
Actinidia17908 Actinidia chinensis HOM05D000300 ORTHO05D000383 4.3e-07 58.5 101 39.6
Cpa.g.sc18.64 Carica papaya HOM05D000300 ORTHO05D000383 4.3e-07 58.5 175 31.4
ClCG07G017320 Citrullus lanatus HOM05D000300 ORTHO05D000383 4.3e-07 58.5 67 47.8
Sabra02G0162200 Salix brachista HOM05D000300 ORTHO05D000383 4.3e-07 58.5 67 43.3
arahy.Tifrunner.gnm1.ann1.FZ8JVT Arachis hypogaea HOM05D000300 ORTHO05D000383 7.4e-07 57.8 93 37.6
Nn3g18645 Nelumbo nucifera HOM05D000300 ORTHO05D000383 7.4e-07 57.8 79 41.8
HPP92_022707 Vanilla planifolia HOM05D000300 ORTHO05D008589 7.4e-07 57.8 110 36.4
Oeu014937.1 Olea europaea HOM05D000300 ORTHO05D000383 9.7e-07 57.4 99 38.4
TWI75G0319 Tripterygium wilfordii HOM05D000300 ORTHO05D000383 9.7e-07 57.4 99 36.4
vmacro02395 Vaccinium macrocarpon HOM05D000300 ORTHO05D000383 9.7e-07 57.4 57 49.1
CANSAT25G2113 Cannabis sativa HOM05D000300 ORTHO05D000383 1.3e-06 57.0 98 37.8
MD09G1284000 Malus domestica HOM05D000300 ORTHO05D000383 1.3e-06 57.0 99 38.4
ClCG05G025610 Citrullus lanatus HOM05D000300 ORTHO05D008589 1.6e-06 56.6 92 39.1
Migut.F01726 Erythranthe guttata HOM05D000300 ORTHO05D008589 1.6e-06 56.6 87 40.2
PGR083G2456 Punica granatum HOM05D000300 ORTHO05D000383 1.6e-06 56.6 66 45.5
Nn3g18646 Nelumbo nucifera HOM05D000300 ORTHO05D000383 2.2e-06 56.2 66 40.9
SalBow6G5959 Salvia bowleyana HOM05D000300 ORTHO05D008589 2.2e-06 56.2 94 37.2
THA.LOC104815919 Tarenaya hassleriana HOM05D000300 ORTHO05D000383 2.2e-06 56.2 99 36.4
arahy.Tifrunner.gnm1.ann1.UGTA1Q Arachis hypogaea HOM05D000300 ORTHO05D000383 2.8e-06 55.8 93 37.6
Oeu000812.1 Olea europaea HOM05D000300 ORTHO05D008589 2.8e-06 55.8 94 38.3
Rhsim13G0004200 Rhododendron simsii HOM05D000300 ORTHO05D000383 2.8e-06 55.8 74 43.2
Sc24g0004220 Simmondsia chinensis HOM05D000300 ORTHO05D000383 2.8e-06 55.8 66 42.4
AUR62011786 Chenopodium quinoa HOM05D000300 ORTHO05D000383 3.7e-06 55.5 66 42.4
COL.COLO4_23216 Corchorus olitorius HOM05D000300 ORTHO05D000383 3.7e-06 55.5 66 43.9
MELO3C011969.2 Cucumis melo HOM05D000300 ORTHO05D008589 3.7e-06 55.5 99 35.4
CsaV3_4G004520 Cucumis sativus L. HOM05D000300 ORTHO05D000383 3.7e-06 55.5 94 39.4
FAN17G1713 Fragaria x ananassa HOM05D000300 ORTHO05D008589 3.7e-06 55.5 99 34.3
MD17G1277200 Malus domestica HOM05D000300 ORTHO05D000383 3.7e-06 55.5 66 45.5
RcHm_v2.0_Chr3g0487401 Rosa chinensis HOM05D000300 ORTHO05D000383 3.7e-06 55.5 94 39.4
Ah.02g112360 Amaranthus hybridus HOM05D000300 ORTHO05D000383 4.8e-06 55.1 66 40.9
CSS0018420 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 4.8e-06 55.1 86 39.5
CDE01G0685 Ceratophyllum demersum HOM05D000300 ORTHO05D000383 4.8e-06 55.1 94 36.2
vmacro01566 Vaccinium macrocarpon HOM05D000300 ORTHO05D000383 4.8e-06 55.1 95 36.8
Cc02_g35100 Coffea canephora HOM05D000300 ORTHO05D000383 6.3e-06 54.7 97 38.1
TAR362G1228 Trochodendron aralioides HOM05D000300 ORTHO05D000383 6.3e-06 54.7 91 37.4
HPP92_013519 Vanilla planifolia HOM05D000300 ORTHO05D000383 6.3e-06 54.7 66 40.9
Duzib133G1019 Durio zibethinus HOM05D000300 ORTHO05D000383 8.2e-06 54.3 66 42.4
Peaxi162Scf01061g00130 Petunia axillaris HOM05D000300 ORTHO05D000383 8.2e-06 54.3 67 41.8
Sed0019325 Sechium edule HOM05D000300 ORTHO05D000383 8.2e-06 54.3 100 37.0
Solyc11g006380.2 Solanum lycopersicum HOM05D000300 ORTHO05D008589 8.2e-06 54.3 94 37.2
Sopen11g002280 Solanum pennellii HOM05D000300 ORTHO05D008589 8.2e-06 54.3 94 37.2


User provided reference genes

Program Settings