Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 0.0e+00 1470.7 770 100.0
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 0.0e+00 1358.2 774 91.5
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 0.0e+00 1358.2 774 91.5
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 0.0e+00 1352.8 776 90.9
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 0.0e+00 1340.1 776 90.2
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 0.0e+00 1338.2 776 90.1
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 0.0e+00 1267.3 791 85.1
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 0.0e+00 1250.3 796 84.4
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 0.0e+00 1200.3 786 80.8
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 0.0e+00 1188.7 788 81.3
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 0.0e+00 1174.8 791 80.2
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 0.0e+00 1162.9 778 81.6
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 1.4e-254 883.2 789 66.2
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 3.6e-242 842.0 852 59.7
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 1.3e-164 584.3 908 43.9
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 1.7e-159 567.4 908 42.5
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 2.3e-156 557.0 922 42.0
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 3.9e-156 556.2 873 44.7
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 1.1e-155 554.7 920 42.2
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 6.2e-154 548.9 927 42.6
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 4.0e-153 546.2 925 41.9
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 9.9e-152 541.6 896 42.1
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 9.9e-152 541.6 796 47.6
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 2.2e-151 540.4 922 42.1
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 5.5e-150 535.8 897 42.3
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 9.3e-150 535.0 792 44.8
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 1.2e-149 534.6 921 41.4
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 4.6e-149 532.7 896 41.7
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 3.9e-148 529.6 890 41.6
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 5.1e-148 529.3 868 42.9
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 3.3e-147 526.6 915 40.3
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 5.3e-145 519.2 925 40.1
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 3.2e-142 510.0 893 41.4
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 3.2e-142 510.0 911 40.3
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 5.5e-142 509.2 924 40.0
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 3.5e-141 506.5 918 40.2
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.0e-140 505.0 909 40.3
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 6.7e-140 502.3 990 39.4
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 1.9e-139 500.7 890 39.8
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 2.5e-139 500.4 927 39.2
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 1.6e-138 497.7 908 41.2
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 2.0e-136 490.7 844 41.4
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 7.6e-136 488.8 919 38.6
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 1.7e-135 487.6 912 39.3
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.5e-134 483.8 918 39.2
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 3.2e-134 483.4 918 39.3
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.2e-133 481.5 917 39.1
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 2.7e-133 480.3 924 38.7
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 2.3e-132 477.2 913 40.2
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 3.9e-132 476.5 925 40.8
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 3.9e-132 476.5 925 40.8
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 8.7e-132 475.3 921 39.3
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.5e-131 473.8 864 39.5
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 3.3e-131 473.4 914 38.2
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 5.7e-131 472.6 840 40.6
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 2.8e-130 470.3 923 39.1
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 8.2e-130 468.8 918 39.3
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 1.8e-129 467.6 896 39.1
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 2.4e-129 467.2 910 38.0
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 6.9e-129 465.7 823 39.7
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 9.0e-129 465.3 872 41.1
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 1.5e-128 464.5 880 40.1
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 3.4e-128 463.4 913 38.4
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 1.0e-127 461.8 909 37.8
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 1.3e-127 461.5 912 38.2
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 5.0e-127 459.5 853 38.3
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.1e-126 458.4 915 37.4
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 1.1e-126 458.4 919 36.8
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 1.4e-126 458.0 867 39.7
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 4.2e-126 456.4 920 39.3
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 9.4e-126 455.3 882 40.8
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 1.2e-125 454.9 919 36.7
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 3.6e-125 453.4 909 39.2
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 1.0e-124 451.8 921 37.0
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 1.8e-124 451.1 895 39.0
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 8.8e-124 448.7 894 37.2
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 2.0e-123 447.6 860 38.7
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 7.4e-123 445.7 920 38.4
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 6.3e-122 442.6 889 39.4
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 1.3e-119 434.9 879 35.7
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 1.4e-116 424.9 850 37.4
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 8.8e-116 422.2 900 36.7
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 1.1e-115 421.8 968 35.1
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 2.8e-114 417.2 864 38.3
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 1.1e-113 415.2 911 34.8
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 7.0e-113 412.5 968 34.7
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 1.6e-112 411.4 901 35.3
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.6e-112 411.4 755 39.5
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 7.7e-112 409.1 897 35.2
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.3e-111 408.3 768 37.8
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 2.2e-111 407.5 952 35.7
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 1.1e-110 405.2 885 36.3
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 1.6e-109 401.4 950 35.8
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 3.6e-109 400.2 606 44.7
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 8.8e-108 395.6 825 35.6
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 9.7e-107 392.1 749 38.5
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 1.3e-106 391.7 916 34.2
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 3.1e-105 387.1 879 36.2
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 7.0e-105 386.0 845 37.2
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 1.2e-104 385.2 896 35.8
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.6e-104 384.8 854 37.1
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 2.7e-104 384.0 886 35.8
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 5.9e-104 382.9 973 34.4
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 7.7e-104 382.5 855 35.8
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 1.3e-103 381.7 837 37.4
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 8.5e-103 379.0 865 35.7
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 3.2e-102 377.1 809 36.2
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 4.2e-102 376.7 820 37.6
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 8.8e-100 369.0 837 36.8
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 3.4e-99 367.1 892 34.5
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 4.4e-99 366.7 894 34.3
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 3.7e-98 363.6 846 34.4
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 4.8e-98 363.2 818 34.5
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 1.5e-94 351.7 997 31.9
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 1.8e-92 344.7 229 77.7
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 1.2e-91 342.0 679 39.5
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 5.4e-81 306.6 852 34.0
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 4.6e-80 303.5 888 32.7
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 1.8e-76 291.6 923 30.4
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 8.9e-76 289.3 665 38.2
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 1.7e-74 285.0 805 34.4
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 8.3e-74 282.7 704 35.9
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 1.9e-73 281.6 785 32.7
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 3.0e-71 274.2 829 31.8
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 5.8e-67 260.0 931 30.5
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 1.7e-58 231.9 933 29.7
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 4.9e-50 203.8 936 28.5
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 1.2e-48 199.1 644 31.8
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.5e-43 182.2 930 25.9
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 1.1e-41 176.0 467 34.3
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 2.7e-40 171.4 420 29.3
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 4.0e-36 157.5 259 42.5
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 6.0e-32 143.7 181 42.5
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 1.3e-31 142.5 215 41.4
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.5e-22 112.5 390 29.0
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 3.3e-22 111.3 313 32.6
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 4.3e-22 110.9 489 28.2
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 1.7e-18 99.0 641 25.6
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 1.4e-17 95.9 207 33.8
Medtr5g025380 Medicago truncatula HOM05D005001 ORTHO05D005796 2.2e-13 82.0 134 41.8
CDE05G3420 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 6.9e-12 77.0 384 25.5
Dinv23669 Davidia involucrata HOM05D005001 ORTHO05D005796 4.5e-11 74.3 152 35.5
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 1.1e-09 69.7 174 29.9
AagrBONN_evm.TU.Sc2ySwM_228.4044 Anthoceros agrestis HOM05D002515 ORTHO05D005796 3.2e-09 68.2 231 27.7
DCAR_009231 Daucus carota HOM05D002515 ORTHO05D002722 1.6e-08 65.9 294 23.8
PSO339G4477 Papaver somniferum HOM05D002515 ORTHO05D002722 1.6e-08 65.9 179 30.2
ECA236G1034 Erigeron canadensis HOM05D002515 ORTHO05D005057 2.7e-08 65.1 306 24.8
Dinv30187 Davidia involucrata HOM05D005001 ORTHO05D005796 3.6e-08 64.7 137 33.6
Glyma.13G335900 Glycine max HOM05D002515 ORTHO05D002722 3.6e-08 64.7 210 27.6
PSO384G3367 Papaver somniferum HOM05D002515 ORTHO05D002722 6.1e-08 63.9 179 29.6
Phvul.L005343 Phaseolus vulgaris HOM05D002515 ORTHO05D002722 6.1e-08 63.9 270 25.6
FAN21G0377 Fragaria x ananassa HOM05D002515 ORTHO05D006653 7.9e-08 63.5 179 30.2
Aqoxy4G02918 Aquilegia oxysepala HOM05D002515 ORTHO05D002722 1.4e-07 62.8 280 26.4
CDE05G1993 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 1.1e-06 59.7 476 22.5
Lalb_Chr24g0394151 Lupinus albus HOM05D002515 ORTHO05D002722 1.1e-06 59.7 174 28.7
Cpa.g.sc8.210 Carica papaya HOM05D002769 ORTHO05D003160 1.5e-06 59.3 278 23.0
Eucgr.J02056 Eucalyptus grandis HOM05D002515 ORTHO05D002722 1.5e-06 59.3 171 26.3
PSO764G0032 Papaver somniferum HOM05D002769 ORTHO05D003160 1.5e-06 59.3 464 23.9
ClCG09G009430 Citrullus lanatus HOM05D002769 ORTHO05D003160 2.6e-06 58.5 181 24.9
Dinv03480 Davidia involucrata HOM05D005001 ORTHO05D005796 2.6e-06 58.5 83 42.2
Lsat_1_v5_gn_8_109380 Lactuca sativa HOM05D002515 ORTHO05D002722 3.3e-06 58.2 272 24.3
Psat6g048200 Pisum sativum HOM05D002515 ORTHO05D002722 5.7e-06 57.4 167 25.7
Glyma.15G038400 Glycine max HOM05D002515 ORTHO05D002722 7.4e-06 57.0 217 25.3


User provided reference genes

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