Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g16351 Brassica carinata HOM05D000272 ORTHO05D000164 1.1e-63 246.5 126 100.0
Sp3g29670 Schrenkiella parvula HOM05D000272 ORTHO05D000164 3.5e-46 188.3 138 74.6
BraA07t28243Z Brassica rapa HOM05D000272 ORTHO05D000164 1.5e-44 183.0 138 73.9
Thhalv10022660m.g Eutrema salsugineum HOM05D000272 ORTHO05D000164 2.5e-44 182.2 138 73.2
A07p04540 Brassica napus HOM05D000272 ORTHO05D000164 4.3e-44 181.4 137 73.7
BcaC06g36147 Brassica carinata HOM05D000272 ORTHO05D000164 8.1e-43 177.2 138 71.7
BolC7t41144H Brassica oleracea HOM05D000272 ORTHO05D000164 8.1e-43 177.2 138 71.7
C07p07240 Brassica napus HOM05D000272 ORTHO05D000164 2.3e-42 175.6 138 71.0
BcaC01g03022 Brassica carinata HOM05D000272 ORTHO05D000164 1.4e-39 166.4 123 70.7
C03p57020 Brassica napus HOM05D000272 ORTHO05D000164 1.4e-39 166.4 123 70.7
BolC3t17980H Brassica oleracea HOM05D000272 ORTHO05D000164 1.4e-39 166.4 123 70.7
A03p45790 Brassica napus HOM05D000272 ORTHO05D000164 1.2e-38 163.3 124 69.4
BraA03t13709Z Brassica rapa HOM05D000272 ORTHO05D000164 1.2e-38 163.3 124 69.4
Carub.0003s3017 Capsella rubella HOM05D000272 ORTHO05D000164 4.9e-32 141.4 141 61.7
AL3G52570 Arabidopsis lyrata HOM05D000272 ORTHO05D000164 7.1e-31 137.5 131 61.8
AT2G16400 Arabidopsis thaliana HOM05D000272 ORTHO05D000164 9.2e-31 137.1 131 61.1
CARHR106650 Cardamine hirsuta HOM05D000272 ORTHO05D000164 3.5e-30 135.2 132 59.1
BcaB08g34647 Brassica carinata HOM05D000272 ORTHO05D000164 3.3e-28 128.6 126 61.1
Aa31LG8G13760 Aethionema arabicum HOM05D000272 ORTHO05D000164 2.4e-23 112.5 170 45.3
BcaNung07068 Brassica carinata HOM05D000272 ORTHO05D000164 1.2e-17 93.6 168 41.7
BolC7t46497H Brassica oleracea HOM05D000272 ORTHO05D000164 1.2e-17 93.6 166 42.8
C07p60670 Brassica napus HOM05D000272 ORTHO05D000164 2.0e-17 92.8 166 42.2
Carub.0007s0567 Capsella rubella HOM05D000272 ORTHO05D000164 2.1e-14 82.8 145 43.4
THA.LOC104819622 Tarenaya hassleriana HOM05D000272 ORTHO05D000164 3.5e-14 82.0 103 53.4
BraA03t15378Z Brassica rapa HOM05D000272 ORTHO05D000164 2.3e-13 79.3 101 53.5
Thhalv10024906m.g Eutrema salsugineum HOM05D000272 ORTHO05D000164 4.3e-12 75.1 145 40.7
GSVIVG01024224001 Vitis vinifera HOM05D000272 ORTHO05D000164 5.6e-12 74.7 115 44.3
Cpa.g.sc1426.1 Carica papaya HOM05D000272 ORTHO05D000164 1.6e-11 73.2 135 40.7
MSTRG.16830 Avicennia marina HOM05D000272 ORTHO05D000164 4.8e-11 71.6 140 34.3
Gohir.A13G031900 Gossypium hirsutum HOM05D000272 ORTHO05D000164 8.1e-11 70.9 127 44.1
MD10G1068000 Malus domestica HOM05D000272 ORTHO05D000164 8.1e-11 70.9 108 42.6
FvH4_2g09770 Fragaria vesca HOM05D000272 ORTHO05D000164 1.4e-10 70.1 141 39.0
FAN15G3460 Fragaria x ananassa HOM05D000272 ORTHO05D000164 1.4e-10 70.1 141 39.0
FAN24G2720 Fragaria x ananassa HOM05D000272 ORTHO05D000164 1.4e-10 70.1 141 39.0
Gohir.D02G218500 Gossypium hirsutum HOM05D000272 ORTHO05D000164 1.4e-10 70.1 93 50.5
COL.COLO4_25998 Corchorus olitorius HOM05D000272 ORTHO05D000164 1.8e-10 69.7 104 46.2
Duzib248G0111 Durio zibethinus HOM05D000272 ORTHO05D000164 1.8e-10 69.7 106 45.3
Potri.004G159300 Populus trichocarpa HOM05D000272 ORTHO05D000164 1.8e-10 69.7 103 43.7
Rhsim11G0180900 Rhododendron simsii HOM05D000272 ORTHO05D000164 1.8e-10 69.7 100 43.0
Atru.chr5.3087 Acer truncatum HOM05D000272 ORTHO05D000164 3.1e-10 68.9 135 39.3
AT4G34610 Arabidopsis thaliana HOM05D000272 ORTHO05D000164 3.1e-10 68.9 117 42.7
MD05G1059800 Malus domestica HOM05D000272 ORTHO05D000164 3.1e-10 68.9 108 44.4
Prupe.8G089800 Prunus persica HOM05D000272 ORTHO05D000164 3.1e-10 68.9 102 45.1
Duzib132G1260 Durio zibethinus HOM05D000272 ORTHO05D000164 4.0e-10 68.6 106 44.3
Gorai.005G246400 Gossypium raimondii HOM05D000272 ORTHO05D000164 4.0e-10 68.6 93 49.5
PGR042G2700 Punica granatum HOM05D000272 ORTHO05D000164 4.0e-10 68.6 106 41.5
RcHm_v2.0_Chr6g0266111 Rosa chinensis HOM05D000272 ORTHO05D000164 4.0e-10 68.6 140 37.9
Actinidia11755 Actinidia chinensis HOM05D000272 ORTHO05D000164 6.9e-10 67.8 125 38.4
Manes.11G082400 Manihot esculenta HOM05D000272 ORTHO05D000164 6.9e-10 67.8 101 44.6
Sp7g32400 Schrenkiella parvula HOM05D000272 ORTHO05D000164 6.9e-10 67.8 147 39.5
TWI31G1132 Tripterygium wilfordii HOM05D000272 ORTHO05D000164 6.9e-10 67.8 103 44.7
vmacro02075 Vaccinium macrocarpon HOM05D000272 ORTHO05D000164 6.9e-10 67.8 103 39.8
FAN20G1287 Fragaria x ananassa HOM05D000272 ORTHO05D000164 9.0e-10 67.4 141 37.6
Gohir.A03G197100 Gossypium hirsutum HOM05D000272 ORTHO05D000164 9.0e-10 67.4 93 48.4
Sabra04G0106600 Salix brachista HOM05D000272 ORTHO05D000164 9.0e-10 67.4 135 38.5
CARHR242790 Cardamine hirsuta HOM05D000272 ORTHO05D000164 1.2e-09 67.0 129 41.1
FAN27G1397 Fragaria x ananassa HOM05D000272 ORTHO05D000164 1.2e-09 67.0 141 38.3
Actinidia00557 Actinidia chinensis HOM05D000272 ORTHO05D000164 1.5e-09 66.6 99 43.4
Eucgr.I01293 Eucalyptus grandis HOM05D000272 ORTHO05D000164 1.5e-09 66.6 123 40.7
Gohir.D13G030400 Gossypium hirsutum HOM05D000272 ORTHO05D000164 1.5e-09 66.6 136 38.2
Gorai.013G034600 Gossypium raimondii HOM05D000272 ORTHO05D000164 1.5e-09 66.6 136 38.2
Cfa005061 Carpinus fangiana HOM05D000272 ORTHO05D000164 2.0e-09 66.2 117 42.7
Haze_02321 Corylus avellana HOM05D000272 ORTHO05D000164 2.0e-09 66.2 135 40.0
Gohir.D12G030200 Gossypium hirsutum HOM05D000272 ORTHO05D000164 2.6e-09 65.9 104 44.2
Actinidia15363 Actinidia chinensis HOM05D000272 ORTHO05D000164 5.8e-09 64.7 95 43.2
Dinv42033 Davidia involucrata HOM05D000272 ORTHO05D000164 5.8e-09 64.7 137 32.8
DCAR_028962 Daucus carota HOM05D000272 ORTHO05D000164 7.6e-09 64.3 142 33.8
Potri.009G120800 Populus trichocarpa HOM05D000272 ORTHO05D000164 7.6e-09 64.3 135 37.0
AL7G16590 Arabidopsis lyrata HOM05D000272 ORTHO05D000164 1.3e-08 63.5 122 39.3
Hma1.2p1_0851F.1_g228360 Hydrangea macrophylla HOM05D000272 ORTHO05D000164 1.3e-08 63.5 93 40.9
CSS0025920 Camellia sinensis var. sinensis HOM05D000272 ORTHO05D000164 1.7e-08 63.2 93 44.1
CSS0040879 Camellia sinensis var. sinensis HOM05D000272 ORTHO05D000164 1.7e-08 63.2 93 44.1
Duzib052G0773 Durio zibethinus HOM05D000272 ORTHO05D000164 2.2e-08 62.8 131 35.9
TWI79G1780 Tripterygium wilfordii HOM05D000272 ORTHO05D000164 2.2e-08 62.8 129 38.8
CAN.G851.41 Capsicum annuum HOM05D000272 ORTHO05D000164 2.9e-08 62.4 107 39.3
Dinv23484 Davidia involucrata HOM05D000272 ORTHO05D000164 2.9e-08 62.4 141 34.0
Gohir.A12G042100 Gossypium hirsutum HOM05D000272 ORTHO05D000164 2.9e-08 62.4 104 40.4
Sed0001561 Sechium edule HOM05D000272 ORTHO05D000164 2.9e-08 62.4 145 34.5
Thecc.02G079800 Theobroma cacao HOM05D000272 ORTHO05D000164 2.9e-08 62.4 101 44.6
Ciclev10027952m.g Citrus clementina HOM05D000272 ORTHO05D000164 3.8e-08 62.0 104 40.4
MELO3C023333.2 Cucumis melo HOM05D000272 ORTHO05D000164 3.8e-08 62.0 145 34.5
ECA240G0638 Erigeron canadensis HOM05D000272 ORTHO05D000164 3.8e-08 62.0 96 39.6
Actinidia22514 Actinidia chinensis HOM05D000272 ORTHO05D000164 4.9e-08 61.6 95 42.1
ClCG11G004100 Citrullus lanatus HOM05D000272 ORTHO05D000164 4.9e-08 61.6 145 34.5
PSO675G1668 Papaver somniferum HOM05D000272 ORTHO05D000164 6.4e-08 61.2 99 41.4
SalBow6G0211 Salvia bowleyana HOM05D000272 ORTHO05D000164 6.4e-08 61.2 102 38.2
FvH4_2g39260 Fragaria vesca HOM05D000272 ORTHO05D000164 8.4e-08 60.8 89 42.7
FAN15G1255 Fragaria x ananassa HOM05D000272 ORTHO05D000164 8.4e-08 60.8 89 42.7
Aqoxy6G01202 Aquilegia oxysepala HOM05D000272 ORTHO05D000164 1.1e-07 60.5 102 41.2
CANSAT11G2696 Cannabis sativa HOM05D000272 ORTHO05D000164 1.1e-07 60.5 107 37.4
Duzib093G0595 Durio zibethinus HOM05D000272 ORTHO05D000164 1.1e-07 60.5 90 42.2
FAN26G1150 Fragaria x ananassa HOM05D000272 ORTHO05D000164 1.1e-07 60.5 89 42.7
HPP92_010451 Vanilla planifolia HOM05D000272 ORTHO05D000164 1.1e-07 60.5 108 38.9
CsaV3_2G015080 Cucumis sativus L. HOM05D000272 ORTHO05D000164 1.4e-07 60.1 145 33.1
PSO541G5161 Papaver somniferum HOM05D000272 ORTHO05D000164 1.4e-07 60.1 91 42.9
QL11p045337 Quercus lobata HOM05D000272 ORTHO05D000164 1.4e-07 60.1 119 38.7
FAN20G0214 Fragaria x ananassa HOM05D000272 ORTHO05D000164 1.9e-07 59.7 89 41.6
Gorai.008G031100 Gossypium raimondii HOM05D000272 ORTHO05D000164 1.9e-07 59.7 101 41.6
MD08G1024200 Malus domestica HOM05D000272 ORTHO05D000164 1.9e-07 59.7 97 44.3
Sed0007173 Sechium edule HOM05D000272 ORTHO05D000164 1.9e-07 59.7 145 34.5
RcHm_v2.0_Chr6g0301751 Rosa chinensis HOM05D000272 ORTHO05D000164 2.4e-07 59.3 89 42.7
QL02p010174 Quercus lobata HOM05D000272 ORTHO05D000164 3.2e-07 58.9 99 43.4
CiPaw.05G070400 Carya illinoinensis HOM05D000272 ORTHO05D000164 4.2e-07 58.5 116 40.5
Cc02_g17190 Coffea canephora HOM05D000272 ORTHO05D000164 4.2e-07 58.5 97 38.1
Sabra09G0093100 Salix brachista HOM05D000272 ORTHO05D000164 4.2e-07 58.5 93 41.9
PGSC0003DMG400003751 Solanum tuberosum HOM05D000272 ORTHO05D000164 4.2e-07 58.5 107 38.3
Thecc.08G034200 Theobroma cacao HOM05D000272 ORTHO05D000164 4.2e-07 58.5 92 41.3
MSTRG.20061 Avicennia marina HOM05D000272 ORTHO05D000164 5.5e-07 58.2 88 43.2
FAN27G1949 Fragaria x ananassa HOM05D000272 ORTHO05D000164 5.5e-07 58.2 89 42.7
Lsat_1_v5_gn_9_107800 Lactuca sativa HOM05D000272 ORTHO05D000164 7.1e-07 57.8 84 41.7
Lj5A193T98 Lonicera japonica HOM05D000272 ORTHO05D000164 7.1e-07 57.8 105 37.1
Lalb_Chr22g0354541 Lupinus albus HOM05D000272 ORTHO05D000164 7.1e-07 57.8 99 40.4
Solyc01g109980.4 Solanum lycopersicum HOM05D000272 ORTHO05D000164 7.1e-07 57.8 95 41.1
Solyc04g080790.3 Solanum lycopersicum HOM05D000272 ORTHO05D000164 7.1e-07 57.8 107 38.3
Sopen01g052170 Solanum pennellii HOM05D000272 ORTHO05D000164 7.1e-07 57.8 95 41.1
TAR628G1741 Trochodendron aralioides HOM05D000272 ORTHO05D000164 7.1e-07 57.8 102 41.2
Lj9A377T92 Lonicera japonica HOM05D000272 ORTHO05D000164 9.3e-07 57.4 105 37.1
Nn5g29717 Nelumbo nucifera HOM05D000272 ORTHO05D000164 1.2e-06 57.0 105 40.0
Migut.B00204 Erythranthe guttata HOM05D000272 ORTHO05D000164 1.6e-06 56.6 88 37.5
Manes.18G021400 Manihot esculenta HOM05D000272 ORTHO05D000164 1.6e-06 56.6 99 38.4
Sopen04g034380 Solanum pennellii HOM05D000272 ORTHO05D000164 1.6e-06 56.6 107 37.4
SGA_v2.0_scaffold58G20496 Striga asiatica HOM05D000272 ORTHO05D000164 1.6e-06 56.6 109 36.7
Zm00001eb032780 Zea mays HOM05D000272 ORTHO05D000164 1.6e-06 56.6 106 40.6
Nn1g05793 Nelumbo nucifera HOM05D000272 ORTHO05D000164 2.1e-06 56.2 98 40.8
Nitab4.5_0001861g0090 Nicotiana tabacum HOM05D000272 ORTHO05D000164 2.1e-06 56.2 93 38.7
Os03g0680800 Oryza sativa ssp. japonica HOM05D000272 ORTHO05D000164 2.1e-06 56.2 94 39.4
COL.COLO4_26237 Corchorus olitorius HOM05D000272 ORTHO05D000164 2.7e-06 55.8 91 40.7
PGSC0003DMG400030961 Solanum tuberosum HOM05D000272 ORTHO05D000164 2.7e-06 55.8 95 38.9
CSS0000078 Camellia sinensis var. sinensis HOM05D000272 ORTHO05D000164 3.5e-06 55.5 107 37.4
CSS0047451 Camellia sinensis var. sinensis HOM05D000272 ORTHO05D000164 3.5e-06 55.5 107 37.4
CiPaw.08G061100 Carya illinoinensis HOM05D000272 ORTHO05D000164 3.5e-06 55.5 100 42.0
PGR142G1954 Punica granatum HOM05D000272 ORTHO05D000164 3.5e-06 55.5 119 36.1
HPP92_011035 Vanilla planifolia HOM05D000272 ORTHO05D000164 3.5e-06 55.5 89 39.3
CAN.G1544.12 Capsicum annuum HOM05D000272 ORTHO05D000164 4.6e-06 55.1 95 41.1
AUR62014471 Chenopodium quinoa HOM05D000272 ORTHO05D000164 4.6e-06 55.1 89 42.7
AUR62034527 Chenopodium quinoa HOM05D000272 ORTHO05D000164 4.6e-06 55.1 89 42.7
Peaxi162Scf00016g00423 Petunia axillaris HOM05D000272 ORTHO05D000164 4.6e-06 55.1 105 38.1
vmacro21684 Vaccinium macrocarpon HOM05D000272 ORTHO05D000164 4.6e-06 55.1 77 45.5
PSO170G6528 Papaver somniferum HOM05D000272 ORTHO05D000164 6.0e-06 54.7 137 35.8
Hund26888 Selenicereus undatus HOM05D000272 ORTHO05D000164 6.0e-06 54.7 95 43.2
Cc10_g02400 Coffea canephora HOM05D000272 ORTHO05D000164 7.9e-06 54.3 89 41.6


User provided reference genes

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