Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g16270 Brassica carinata HOM05D005496 ORTHO05D006677 4.8e-117 424.5 210 100.0
BcaB07g31795 Brassica carinata HOM05D005496 ORTHO05D006677 4.2e-105 384.8 251 80.5
C07p08630 Brassica napus HOM05D005496 ORTHO05D006677 9.4e-105 383.6 251 80.1
BolC9t54157H Brassica oleracea HOM05D005496 ORTHO05D006677 1.6e-104 382.9 250 80.4
Sp3g28490 Schrenkiella parvula HOM05D005496 ORTHO05D006677 2.7e-104 382.1 251 80.1
Thhalv10022824m.g Eutrema salsugineum HOM05D005496 ORTHO05D006677 1.0e-103 380.2 251 79.3
AL3G46950 Arabidopsis lyrata HOM05D005496 ORTHO05D006677 6.8e-103 377.5 251 78.1
AT2G15240 Arabidopsis thaliana HOM05D005496 ORTHO05D006677 9.8e-102 373.6 251 77.3
Carub.0003s2908 Capsella rubella HOM05D005496 ORTHO05D006677 2.2e-101 372.5 251 77.3
BraA07t28330Z Brassica rapa HOM05D005496 ORTHO05D006677 1.8e-100 369.4 254 76.4
A07p05380 Brassica napus HOM05D005496 ORTHO05D006677 4.1e-100 368.2 253 76.3
BolC7t41274H Brassica oleracea HOM05D005496 ORTHO05D006677 1.2e-99 366.7 237 79.3
THA.LOC104807241 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 8.0e-96 354.0 250 74.0
MD05G1089700 Malus domestica HOM05D005496 ORTHO05D006677 3.4e-94 348.6 251 71.7
Cpa.g.sc106.90 Carica papaya HOM05D005496 ORTHO05D006677 5.7e-94 347.8 250 71.6
THA.LOC104819553 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 5.7e-94 347.8 250 72.8
CiPaw.06G169300 Carya illinoinensis HOM05D005496 ORTHO05D006677 1.3e-93 346.7 252 71.4
A09p10680 Brassica napus HOM05D005496 ORTHO05D006677 2.2e-93 345.9 230 79.6
C09p12670 Brassica napus HOM05D005496 ORTHO05D006677 2.2e-93 345.9 230 79.6
TWI75G0729 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 3.7e-93 345.1 251 71.7
Atru.chr5.2543 Acer truncatum HOM05D005496 ORTHO05D006677 1.1e-92 343.6 252 70.6
Atru.chr5.2566 Acer truncatum HOM05D005496 ORTHO05D006677 1.1e-92 343.6 252 70.6
Dinv15765 Davidia involucrata HOM05D005496 ORTHO05D006677 1.1e-92 343.6 249 69.5
MD10G1096900 Malus domestica HOM05D005496 ORTHO05D006677 1.1e-92 343.6 251 70.5
Prupe.8G135000 Prunus persica HOM05D005496 ORTHO05D006677 1.1e-92 343.6 251 70.1
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 1.4e-92 343.2 224 78.1
TWI79G0817 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 7.0e-92 340.9 251 70.9
Dinv42193 Davidia involucrata HOM05D005496 ORTHO05D006677 1.2e-91 340.1 249 69.1
Gohir.D12G022500 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.2e-91 340.1 251 68.9
CSS0023946 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 1.6e-91 339.7 249 68.7
CSS0028960 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 1.6e-91 339.7 249 68.7
CiPaw.05G011600 Carya illinoinensis HOM05D005496 ORTHO05D006677 1.6e-91 339.7 252 71.4
Gohir.A12G022100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 2.0e-91 339.3 251 68.9
FvH4_2g05170 Fragaria vesca HOM05D005496 ORTHO05D006677 2.7e-91 339.0 250 70.0
CANSAT25G1824 Cannabis sativa HOM05D005496 ORTHO05D006677 1.0e-90 337.0 253 66.8
CANSAT25G2648 Cannabis sativa HOM05D005496 ORTHO05D006677 1.0e-90 337.0 253 66.8
RcHm_v2.0_Chr6g0255081 Rosa chinensis HOM05D005496 ORTHO05D006677 1.3e-90 336.7 250 68.8
GSVIVG01003155001 Vitis vinifera HOM05D005496 ORTHO05D006677 1.3e-90 336.7 256 68.0
CARHR105630 Cardamine hirsuta HOM05D005496 ORTHO05D006677 1.7e-90 336.3 224 75.9
ClCG02G006320 Citrullus lanatus HOM05D005496 ORTHO05D006677 1.7e-90 336.3 250 69.6
CsaV3_7G008130 Cucumis sativus L. HOM05D005496 ORTHO05D006677 1.7e-90 336.3 250 69.6
Potri.009G095900 Populus trichocarpa HOM05D005496 ORTHO05D006677 1.7e-90 336.3 253 69.2
Thecc.02G107900 Theobroma cacao HOM05D005496 ORTHO05D006677 1.7e-90 336.3 251 68.5
Lalb_Chr06g0165461 Lupinus albus HOM05D005496 ORTHO05D006677 5.0e-90 334.7 251 68.1
Sed0023992 Sechium edule HOM05D005496 ORTHO05D006677 6.6e-90 334.3 250 68.4
Phvul.007G039900 Phaseolus vulgaris HOM05D005496 ORTHO05D006677 8.6e-90 334.0 254 67.7
MELO3C018493.2 Cucumis melo HOM05D005496 ORTHO05D006677 1.1e-89 333.6 250 68.4
Manes.07G069764 Manihot esculenta HOM05D005496 ORTHO05D006677 1.5e-89 333.2 251 69.3
BraA09t36711Z Brassica rapa HOM05D005496 ORTHO05D006677 1.9e-89 332.8 253 72.3
Sc18g0005590 Simmondsia chinensis HOM05D005496 ORTHO05D006677 2.5e-89 332.4 252 67.5
CSS0021038 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 3.3e-89 332.0 250 66.8
Eucgr.E02959 Eucalyptus grandis HOM05D005496 ORTHO05D006677 4.3e-89 331.6 251 68.1
Glyma.10G262300 Glycine max HOM05D005496 ORTHO05D006677 7.3e-89 330.9 254 67.3
PGR142G1113 Punica granatum HOM05D005496 ORTHO05D006677 7.3e-89 330.9 251 67.7
Actinidia17481 Actinidia chinensis HOM05D005496 ORTHO05D006677 9.5e-89 330.5 250 66.0
Sed0010088 Sechium edule HOM05D005496 ORTHO05D006677 1.6e-88 329.7 251 68.5
DCAR_021987 Daucus carota HOM05D005496 ORTHO05D006677 8.0e-88 327.4 250 66.4
PSO541G0750 Papaver somniferum HOM05D005496 ORTHO05D006677 8.0e-88 327.4 248 68.1
TAR376G0359 Trochodendron aralioides HOM05D005496 ORTHO05D006677 8.0e-88 327.4 248 66.1
FAN27G2869 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.4e-87 326.6 271 64.6
Potri.001G300100 Populus trichocarpa HOM05D005496 ORTHO05D006677 1.4e-87 326.6 253 67.6
Migut.N01167 Erythranthe guttata HOM05D005496 ORTHO05D006677 1.8e-87 326.2 251 66.1
PSO675G7162 Papaver somniferum HOM05D005496 ORTHO05D006677 3.1e-87 325.5 248 67.3
Lalb_Chr21g0308341 Lupinus albus HOM05D005496 ORTHO05D006677 4.0e-87 325.1 256 66.0
PGSC0003DMG402025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 6.8e-87 324.3 251 66.5
Sopen01g049790 Solanum pennellii HOM05D005496 ORTHO05D006677 8.9e-87 323.9 251 66.1
Lj5g0001757 Lotus japonicus HOM05D005496 ORTHO05D006677 1.2e-86 323.6 251 66.5
Solyc01g107600.3 Solanum lycopersicum HOM05D005496 ORTHO05D006677 2.0e-86 322.8 251 66.1
TAR628G1491 Trochodendron aralioides HOM05D005496 ORTHO05D006677 2.6e-86 322.4 248 64.5
Cc02_g19260 Coffea canephora HOM05D005496 ORTHO05D006677 3.4e-86 322.0 261 64.8
Gohir.D01G008100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 3.4e-86 322.0 250 66.0
Medtr1g107430 Medicago truncatula HOM05D005496 ORTHO05D006677 3.4e-86 322.0 256 65.2
TPR.G30567 Trifolium pratense HOM05D005496 ORTHO05D006677 4.4e-86 321.6 255 65.5
MSTRG.5341 Avicennia marina HOM05D005496 ORTHO05D006677 7.5e-86 320.9 250 65.6
Glyma.20G128700 Glycine max HOM05D005496 ORTHO05D006677 9.8e-86 320.5 257 64.6
Ca_11075_v3 Cicer arietinum L. HOM05D005496 ORTHO05D006677 1.3e-85 320.1 255 64.7
Actinidia27972 Actinidia chinensis HOM05D005496 ORTHO05D006677 6.4e-85 317.8 277 60.3
MSTRG.27744 Avicennia marina HOM05D005496 ORTHO05D006677 6.4e-85 317.8 251 64.9
Gorai.002G009400 Gossypium raimondii HOM05D005496 ORTHO05D006677 1.1e-84 317.0 250 64.8
Aqoxy6G02861 Aquilegia oxysepala HOM05D005496 ORTHO05D006677 3.2e-84 315.5 248 62.9
Peaxi162Scf00016g02325 Petunia axillaris HOM05D005496 ORTHO05D006677 7.0e-84 314.3 277 60.3
arahy.Tifrunner.gnm1.ann1.7NM92S Arachis hypogaea HOM05D005496 ORTHO05D006677 1.6e-83 313.2 254 65.4
arahy.Tifrunner.gnm1.ann1.CE7Z9D Arachis hypogaea HOM05D005496 ORTHO05D006677 4.6e-83 311.6 254 65.0
Rhsim11G0160100 Rhododendron simsii HOM05D005496 ORTHO05D006677 4.6e-83 311.6 292 58.2
ECA236G0884 Erigeron canadensis HOM05D005496 ORTHO05D006677 3.0e-82 308.9 249 63.9
ATR0691G184 Amborella trichopoda HOM05D005496 ORTHO05D006677 3.3e-81 305.4 247 62.8
HanXRQChr16g0509221 Helianthus annuus HOM05D005496 ORTHO05D006677 3.3e-81 305.4 249 62.7
HanXRQChr10g0292361 Helianthus annuus HOM05D005496 ORTHO05D006677 2.1e-80 302.8 249 61.8
Aa31LG8G13100 Aethionema arabicum HOM05D005496 ORTHO05D006677 1.4e-79 300.1 253 67.2
FAN24G2091 Fragaria x ananassa HOM05D005496 ORTHO05D006677 6.8e-79 297.7 227 69.2
FAN15G3658 Fragaria x ananassa HOM05D005496 ORTHO05D006677 4.4e-78 295.0 246 63.4
Os09g0109500 Oryza sativa ssp. japonica HOM05D005496 ORTHO05D006677 5.4e-76 288.1 247 59.9
Ciclev10029109m.g Citrus clementina HOM05D005496 ORTHO05D006677 7.1e-76 287.7 199 72.4
Lsat_1_v5_gn_7_86500 Lactuca sativa HOM05D005496 ORTHO05D006677 1.1e-73 280.4 222 63.5
Duzib052G0798 Durio zibethinus HOM05D005496 ORTHO05D006677 1.6e-72 276.6 251 60.2
Gorai.008G022900 Gossypium raimondii HOM05D005496 ORTHO05D006677 4.7e-72 275.0 210 66.7
Psat6g219080 Pisum sativum HOM05D005496 ORTHO05D006677 4.7e-72 275.0 202 68.8
BcaC06g36040 Brassica carinata HOM05D005496 ORTHO05D006677 9.9e-70 267.3 197 71.1
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 1.3e-69 266.9 451 40.1
Nn5g30423 Nelumbo nucifera HOM05D005496 ORTHO05D006677 1.1e-68 263.8 248 54.8
Gohir.A01G008000 Gossypium hirsutum HOM05D005496 ORTHO05D006677 2.4e-68 262.7 247 58.7
Mapoly0001s0126 Marchantia polymorpha HOM05D005496 ORTHO05D006677 3.2e-68 262.3 248 54.0
Pp3c22_1600 Physcomitrium patens HOM05D005496 ORTHO05D006677 5.4e-68 261.5 249 55.0
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 3.5e-67 258.8 197 65.0
Sabra16G0188400 Salix brachista HOM05D005496 ORTHO05D006677 2.3e-66 256.1 281 53.7
Pp3c21_16720 Physcomitrium patens HOM05D005496 ORTHO05D006677 3.0e-66 255.8 249 53.8
vmacro02003 Vaccinium macrocarpon HOM05D005496 ORTHO05D006677 1.2e-64 250.4 336 46.4
SMO358G0568 Selaginella moellendorffii HOM05D005496 ORTHO05D006677 4.0e-63 245.4 249 52.6
AagrBONN_evm.TU.Sc2ySwM_228.4354 Anthoceros agrestis HOM05D005496 ORTHO05D006677 2.6e-62 242.7 235 53.6
Zm00001eb307360 Zea mays HOM05D005496 ORTHO05D006677 1.7e-61 240.0 247 53.8
Hund00151 Selenicereus undatus HOM05D005496 ORTHO05D006677 6.4e-61 238.0 192 63.5
Oeu056146.1 Olea europaea HOM05D005496 ORTHO05D006677 2.4e-60 236.1 170 69.4
Nitab4.5_0002815g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 1.5e-57 226.9 209 60.8
Duzib132G0296 Durio zibethinus HOM05D005496 ORTHO05D006677 2.5e-57 226.1 251 52.2
BolC7t41273H Brassica oleracea HOM05D005496 ORTHO05D006677 1.1e-55 220.7 115 95.7
Actinidia00410 Actinidia chinensis HOM05D005496 ORTHO05D006677 1.5e-54 216.9 240 50.8
Cre06.g250350 Chlamydomonas reinhardtii HOM05D005496 ORTHO05D006677 9.9e-54 214.2 239 46.0
AUR62039077 Chenopodium quinoa HOM05D005496 ORTHO05D006677 1.9e-52 209.9 268 48.9
HPP92_011625 Vanilla planifolia HOM05D005496 ORTHO05D006677 3.2e-52 209.1 145 66.2
Lj5C214T6 Lonicera japonica HOM05D005496 ORTHO05D006677 4.6e-51 205.3 204 56.9
PGSC0003DMG401025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 1.9e-49 199.9 199 55.3
CDE02G0272 Ceratophyllum demersum HOM05D005496 ORTHO05D006677 7.3e-49 198.0 248 44.4
MCO15G042 Micromonas commoda HOM05D005496 ORTHO05D006677 3.1e-47 192.6 223 43.0
Actinidia05496 Actinidia chinensis HOM05D005496 ORTHO05D006677 2.6e-46 189.5 267 45.7
AUR62010309 Chenopodium quinoa HOM05D005496 ORTHO05D006677 2.6e-46 189.5 198 54.5
PRCOL_00006227 Prasinoderma coloniale HOM05D005496 ORTHO05D006677 6.4e-45 184.9 227 44.9
EL10Ac9g22275 Beta vulgaris HOM05D005496 ORTHO05D006677 1.6e-43 180.3 159 60.4
SGA_v2.0_scaffold13G06610 Striga asiatica HOM05D005496 ORTHO05D006677 4.3e-41 172.2 158 57.6
Sabra09G0073700 Salix brachista HOM05D005496 ORTHO05D006677 3.7e-40 169.1 285 38.9
SalBow3G0726 Salvia bowleyana HOM05D005496 ORTHO05D006677 2.0e-38 163.3 192 48.4
SEGI_21612 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 3.0e-34 149.4 91 74.7
Ah.01g018260 Amaranthus hybridus HOM05D005496 ORTHO05D006677 1.1e-33 147.5 151 55.6
FAN20G2824 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.3e-32 144.1 141 58.2
CBR_g4069 Chara braunii HOM05D005496 ORTHO05D006677 1.3e-29 134.0 92 69.6
COL.COLO4_32594 Corchorus olitorius HOM05D005496 ORTHO05D006677 1.1e-28 131.0 133 52.6
SEGI_40705 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 1.6e-19 100.5 112 46.4
Nitab4.5_0005392g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 1.8e-18 97.1 208 36.5
HPP92_026155 Vanilla planifolia HOM05D005496 ORTHO05D006677 9.4e-12 74.7 51 64.7
Haze_10172 Corylus avellana HOM05D005496 ORTHO05D006677 3.1e-07 59.7 83 45.8


User provided reference genes

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