Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g16265 Brassica carinata HOM05D003025 ORTHO05D003305 1.1e-40 169.5 79 100.0
Thhalv10004181m.g Eutrema salsugineum HOM05D003025 ORTHO05D003305 5.8e-23 110.5 58 86.2
AL5G13600 Arabidopsis lyrata HOM05D003025 ORTHO05D003305 3.2e-21 104.8 58 84.5
A06p42840 Brassica napus HOM05D003025 ORTHO05D003305 1.6e-20 102.4 59 83.1
BraA06t27196Z Brassica rapa HOM05D003025 ORTHO05D003305 1.6e-20 102.4 59 83.1
BolC7t43953H Brassica oleracea HOM05D003025 ORTHO05D003305 3.5e-20 101.3 59 81.4
Sp2g14630 Schrenkiella parvula HOM05D003025 ORTHO05D003305 3.5e-20 101.3 57 84.2
BcaC06g31142 Brassica carinata HOM05D003025 ORTHO05D003305 6.0e-20 100.5 59 81.4
Carub.0005s0297 Capsella rubella HOM05D003025 ORTHO05D003305 3.0e-19 98.2 57 78.9
BcaB07g30644 Brassica carinata HOM05D003025 ORTHO05D003305 1.9e-18 95.5 68 66.2
CARHR146220 Cardamine hirsuta HOM05D003025 ORTHO05D003305 3.6e-17 91.3 58 75.9
AT2G03810 Arabidopsis thaliana HOM05D003025 ORTHO05D003305 6.2e-17 90.5 58 75.9
Aa31LG2G6910 Aethionema arabicum HOM05D003025 ORTHO05D003305 4.0e-16 87.8 47 83.0
THA.LOC104805213 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 1.2e-15 86.3 68 66.2
A09p24740 Brassica napus HOM05D003025 ORTHO05D003305 4.5e-15 84.3 56 69.6
BraA09t38060Z Brassica rapa HOM05D003025 ORTHO05D003305 4.5e-15 84.3 56 69.6
BcaC04g21446 Brassica carinata HOM05D003025 ORTHO05D003305 9.9e-15 83.2 56 67.9
C09p31660 Brassica napus HOM05D003025 ORTHO05D003305 2.2e-14 82.0 56 66.1
BolC9t56021H Brassica oleracea HOM05D003025 ORTHO05D003305 2.2e-14 82.0 56 66.1
COL.COLO4_27800 Corchorus olitorius HOM05D003025 ORTHO05D003305 1.5e-10 69.3 35 80.0
Thecc.02G322700 Theobroma cacao HOM05D003025 ORTHO05D003305 7.4e-10 67.0 55 52.7
Gohir.D12G162800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.3e-09 66.2 66 47.0
Gorai.008G175400 Gossypium raimondii HOM05D003025 ORTHO05D003305 1.3e-09 66.2 66 47.0
Duzib248G1661 Durio zibethinus HOM05D003025 ORTHO05D003305 1.6e-09 65.9 62 50.0
THA.LOC104801838 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 2.1e-09 65.5 64 56.2
Gohir.A03G106600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 4.8e-09 64.3 62 48.4
Gohir.D02G131800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 4.8e-09 64.3 62 48.4
CiPaw.06G095000 Carya illinoinensis HOM05D003025 ORTHO05D003305 6.2e-09 63.9 42 64.3
Gohir.A13G088100 Gossypium hirsutum HOM05D003025 ORTHO05D003305 6.2e-09 63.9 46 58.7
Gohir.D13G085500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 6.2e-09 63.9 46 58.7
Gorai.013G097400 Gossypium raimondii HOM05D003025 ORTHO05D003305 6.2e-09 63.9 46 58.7
Manes.14G090300 Manihot esculenta HOM05D003025 ORTHO05D003305 6.2e-09 63.9 34 73.5
Cpa.g.sc1.169 Carica papaya HOM05D003025 ORTHO05D003305 1.1e-08 63.2 52 53.8
Gorai.005G147700 Gossypium raimondii HOM05D003025 ORTHO05D003305 2.4e-08 62.0 61 47.5
Duzib251G0179 Durio zibethinus HOM05D003025 ORTHO05D003305 3.1e-08 61.6 63 47.6
Lj6A773T133 Lonicera japonica HOM05D003025 ORTHO05D003305 3.1e-08 61.6 58 50.0
CiPaw.05G121600 Carya illinoinensis HOM05D003025 ORTHO05D003305 4.0e-08 61.2 35 71.4
Actinidia19904 Actinidia chinensis HOM05D003025 ORTHO05D003305 5.3e-08 60.8 52 48.1
Gohir.A12G159500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 5.3e-08 60.8 65 44.6
BcaB02g06463 Brassica carinata HOM05D003025 ORTHO05D003305 6.9e-08 60.5 56 58.9
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 9.0e-08 60.1 45 57.8
Haze_11858 Corylus avellana HOM05D003025 ORTHO05D003305 9.0e-08 60.1 45 57.8
Rhsim09G0122100 Rhododendron simsii HOM05D003025 ORTHO05D003305 1.2e-07 59.7 50 52.0
Manes.06G079500 Manihot esculenta HOM05D003025 ORTHO05D003305 1.5e-07 59.3 62 45.2
Dinv34020 Davidia involucrata HOM05D003025 ORTHO05D003305 2.6e-07 58.5 34 64.7
Hma1.2p1_0428F.1_g150820 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 3.4e-07 58.2 40 62.5
Nn4g23540 Nelumbo nucifera HOM05D003025 ORTHO05D003305 3.4e-07 58.2 59 45.8
Potri.008G111800 Populus trichocarpa HOM05D003025 ORTHO05D003305 3.4e-07 58.2 45 57.8
BcaC03g17244 Brassica carinata HOM05D003025 ORTHO05D003305 4.5e-07 57.8 66 50.0
THA.LOC104824052 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 4.5e-07 57.8 54 55.6
Sabra08G0084400 Salix brachista HOM05D003025 ORTHO05D003305 5.8e-07 57.4 34 70.6
A06p09750 Brassica napus HOM05D003025 ORTHO05D003305 7.6e-07 57.0 61 54.1
CSS0010260 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 7.6e-07 57.0 43 53.5
Lj3A1027T87 Lonicera japonica HOM05D003025 ORTHO05D003305 9.9e-07 56.6 57 40.4
CANSAT64G2528 Cannabis sativa HOM05D003025 ORTHO05D003305 1.3e-06 56.2 42 54.8
Sabra10G0106400 Salix brachista HOM05D003025 ORTHO05D003305 1.3e-06 56.2 34 64.7
vmacro10474 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 1.3e-06 56.2 55 43.6
Actinidia13406 Actinidia chinensis HOM05D003025 ORTHO05D003305 2.2e-06 55.5 33 63.6
Dinv15582 Davidia involucrata HOM05D003025 ORTHO05D003305 2.2e-06 55.5 27 77.8
TAR374G0527 Trochodendron aralioides HOM05D003025 ORTHO05D003305 2.2e-06 55.5 61 41.0
TAR622G0187 Trochodendron aralioides HOM05D003025 ORTHO05D003305 2.2e-06 55.5 32 65.6
BraA06t24164Z Brassica rapa HOM05D003025 ORTHO05D003305 2.9e-06 55.1 61 52.5
Ciclev10031644m.g Citrus clementina HOM05D003025 ORTHO05D003305 2.9e-06 55.1 35 62.9
Actinidia07767 Actinidia chinensis HOM05D003025 ORTHO05D003305 3.8e-06 54.7 33 60.6
BcaC05g25272 Brassica carinata HOM05D003025 ORTHO05D003305 3.8e-06 54.7 56 53.6
C02p51790 Brassica napus HOM05D003025 ORTHO05D003305 3.8e-06 54.7 64 46.9
TWI31G1177 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 4.9e-06 54.3 36 63.9
Atru.chr11.1558 Acer truncatum HOM05D003025 ORTHO05D003305 6.4e-06 53.9 35 65.7
Medtr5g047930 Medicago truncatula HOM05D003025 ORTHO05D003305 6.4e-06 53.9 39 59.0
Psat2g085960 Pisum sativum HOM05D003025 ORTHO05D003305 6.4e-06 53.9 34 67.6
CSS0010060 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 8.4e-06 53.5 25 80.0


User provided reference genes

Program Settings