Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g16232 Brassica carinata HOM05D003056 ORTHO05D003422 2.2e-125 454.1 291 100.0
C07p08810 Brassica napus HOM05D003056 ORTHO05D003422 3.6e-120 436.8 294 91.8
BolC7t41294H Brassica oleracea HOM05D003056 ORTHO05D003422 3.6e-120 436.8 294 91.8
BcaC06g36026 Brassica carinata HOM05D003056 ORTHO05D003422 4.0e-119 433.3 294 91.2
BraA07t28341Z Brassica rapa HOM05D003056 ORTHO05D003422 7.1e-116 422.5 291 90.4
A07p05480 Brassica napus HOM05D003056 ORTHO05D003422 1.9e-113 414.5 294 89.1
Thhalv10022557m.g Eutrema salsugineum HOM05D003056 ORTHO05D003422 1.0e-106 392.1 312 86.2
Sp3g28230 Schrenkiella parvula HOM05D003056 ORTHO05D003422 9.0e-103 379.0 313 80.2
CARHR210470 Cardamine hirsuta HOM05D003056 ORTHO05D003422 2.3e-98 364.4 303 82.8
AL6G12130 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 4.3e-97 360.1 303 83.2
AT5G02860 Arabidopsis thaliana HOM05D003056 ORTHO05D003422 3.6e-96 357.1 303 82.5
Carub.0006s0166 Capsella rubella HOM05D003056 ORTHO05D003422 3.5e-91 340.5 301 79.7
THA.LOC104819538 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 3.2e-76 290.8 308 54.5
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 7.9e-75 286.2 310 54.5
Aa31LG8G12930 Aethionema arabicum HOM05D003056 ORTHO05D003422 3.3e-73 280.8 313 53.7
Duzib132G1008 Durio zibethinus HOM05D003056 ORTHO05D003422 3.0e-58 231.1 308 45.8
Prupe.8G139200 Prunus persica HOM05D003056 ORTHO05D003422 9.7e-57 226.1 310 43.5
Manes.10G074400 Manihot esculenta HOM05D003056 ORTHO05D003422 1.0e-53 216.1 318 41.8
Atru.chr5.2421 Acer truncatum HOM05D003056 ORTHO05D003422 3.8e-53 214.2 310 42.6
Haze_10217 Corylus avellana HOM05D001121 ORTHO05D001256 1.9e-52 211.8 304 44.4
CiPaw.05G014700 Carya illinoinensis HOM05D003056 ORTHO05D003422 4.2e-52 210.7 307 43.3
Thecc.02G112900 Theobroma cacao HOM05D003056 ORTHO05D003422 7.2e-52 209.9 307 42.7
CANSAT25G1867 Cannabis sativa HOM05D003056 ORTHO05D003422 3.6e-51 207.6 308 41.9
Gorai.005G233300 Gossypium raimondii HOM05D003056 ORTHO05D003422 4.7e-51 207.2 305 47.2
Cfa004621 Carpinus fangiana HOM05D003056 ORTHO05D003422 6.1e-51 206.8 304 42.8
Gohir.D02G205900 Gossypium hirsutum HOM05D003056 ORTHO05D003422 1.8e-50 205.3 306 47.4
Potri.001G297300 Populus trichocarpa HOM05D003056 ORTHO05D003422 2.3e-50 204.9 317 41.0
TAR628G0528 Trochodendron aralioides HOM05D003056 ORTHO05D003422 3.0e-50 204.5 316 40.5
COL.COLO4_32549 Corchorus olitorius HOM05D003056 ORTHO05D003422 6.7e-50 203.4 309 42.1
Hma1.2p1_1174F.1_g263900 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 8.8e-50 203.0 306 46.4
TWI14G1022 Tripterygium wilfordii HOM05D003056 ORTHO05D003422 2.0e-49 201.8 311 40.5
Ciclev10030402m.g Citrus clementina HOM05D003056 ORTHO05D003422 9.7e-49 199.5 308 41.2
Sabra16G0186300 Salix brachista HOM05D003056 ORTHO05D003422 9.7e-49 199.5 317 40.4
HanXRQChr10g0309411 Helianthus annuus HOM05D003056 ORTHO05D003422 2.2e-48 198.4 307 54.1
MELO3C018506.2 Cucumis melo HOM05D003056 ORTHO05D003422 6.3e-48 196.8 324 40.1
SalBow6G6861 Salvia bowleyana HOM05D003056 ORTHO05D003422 8.2e-48 196.4 306 52.3
CsaV3_7G007980 Cucumis sativus L. HOM05D003056 ORTHO05D003422 1.8e-47 195.3 314 40.8
Sc18g0003680 Simmondsia chinensis HOM05D003056 ORTHO05D003422 3.1e-47 194.5 314 47.8
ClCG02G006650 Citrullus lanatus HOM05D003056 ORTHO05D003422 4.1e-47 194.1 313 39.9
Oeu009681.2 Olea europaea HOM05D003056 ORTHO05D003422 4.1e-47 194.1 310 44.5
RcHm_v2.0_Chr6g0254201 Rosa chinensis HOM05D003056 ORTHO05D003422 5.3e-47 193.7 306 39.9
CSS0042594 Camellia sinensis var. sinensis HOM05D003056 ORTHO05D003422 7.0e-47 193.4 307 44.6
FAN27G0367 Fragaria x ananassa HOM05D003056 ORTHO05D003422 7.0e-47 193.4 310 47.4
FvH4_2g04590 Fragaria vesca HOM05D003056 ORTHO05D003422 2.0e-46 191.8 306 40.8
QL11p032336 Quercus lobata HOM05D003056 ORTHO05D003422 1.3e-45 189.1 310 38.4
FAN15G3015 Fragaria x ananassa HOM05D003056 ORTHO05D003422 1.7e-45 188.7 306 40.2
Nn5g30488 Nelumbo nucifera HOM05D003056 ORTHO05D003422 1.7e-45 188.7 320 37.2
PGR142G1622 Punica granatum HOM05D003056 ORTHO05D003422 6.5e-45 186.8 315 40.0
Sed0000805 Sechium edule HOM05D003056 ORTHO05D003422 4.2e-44 184.1 312 39.1
Solyc01g107320.3 Solanum lycopersicum HOM05D003056 ORTHO05D003422 4.2e-44 184.1 308 39.3
FAN24G1521 Fragaria x ananassa HOM05D003056 ORTHO05D003422 5.5e-44 183.7 302 40.1
DCAR_029110 Daucus carota HOM05D003056 ORTHO05D003422 7.2e-44 183.3 309 37.5
FAN20G2458 Fragaria x ananassa HOM05D003056 ORTHO05D003422 7.2e-44 183.3 308 40.9
Migut.B00415 Erythranthe guttata HOM05D003056 ORTHO05D003422 9.4e-44 183.0 310 43.2
CAN.G606.38 Capsicum annuum HOM05D003056 ORTHO05D003422 8.0e-43 179.9 315 36.2
PGSC0003DMG400025851 Solanum tuberosum HOM05D003056 ORTHO05D003422 8.0e-43 179.9 319 36.7
PSO017G1313 Papaver somniferum HOM05D003056 ORTHO05D003422 1.0e-42 179.5 316 38.0
ECA234G1555 Erigeron canadensis HOM05D003056 ORTHO05D003422 1.8e-42 178.7 305 44.9
Sopen01g049560 Solanum pennellii HOM05D003056 ORTHO05D003422 2.3e-42 178.3 308 38.6
PSO063G7185 Papaver somniferum HOM05D003056 ORTHO05D003422 4.0e-42 177.6 314 37.6
EL10Ac8g19354 Beta vulgaris HOM05D001121 ORTHO05D003422 5.2e-42 177.2 315 39.4
Lsat_1_v5_gn_5_80001 Lactuca sativa HOM05D003056 ORTHO05D003422 2.0e-41 175.3 304 45.4
Eucgr.I01083 Eucalyptus grandis HOM05D003056 ORTHO05D003422 7.5e-41 173.3 317 40.7
Potri.009G092100 Populus trichocarpa HOM05D003056 ORTHO05D003422 6.3e-40 170.2 310 36.5
MSTRG.16696 Avicennia marina HOM05D003056 ORTHO05D003422 1.1e-39 169.5 309 45.6
Actinidia34380 Actinidia chinensis HOM05D003056 ORTHO05D003422 2.4e-39 168.3 313 37.1
Rhsim11G0155300 Rhododendron simsii HOM05D001121 ORTHO05D001256 4.1e-39 167.5 309 44.0
AUR62031282 Chenopodium quinoa HOM05D001121 ORTHO05D003422 5.4e-39 167.2 315 47.9
Gohir.A03G184400 Gossypium hirsutum HOM05D003056 ORTHO05D003422 7.0e-39 166.8 291 43.3
Ah.14g085500 Amaranthus hybridus HOM05D001121 ORTHO05D001256 1.6e-38 165.6 310 36.1
AUR62027360 Chenopodium quinoa HOM05D000284 ORTHO05D001229 3.8e-37 161.0 313 46.0
Cc02_g19560 Coffea canephora HOM05D003056 ORTHO05D003422 2.5e-36 158.3 322 34.2
Glyma.20G131400 Glycine max HOM05D003056 ORTHO05D003422 2.5e-36 158.3 296 37.2
SGA_v2.0_scaffold32G13017 Striga asiatica HOM05D003056 ORTHO05D003422 4.7e-35 154.1 327 38.2
CDE07G1890 Ceratophyllum demersum HOM05D001121 ORTHO05D003422 1.4e-34 152.5 297 34.0
SalBow2G2076 Salvia bowleyana HOM05D003056 ORTHO05D003422 1.8e-34 152.1 286 36.4
ATR0618G281 Amborella trichopoda HOM05D003056 ORTHO05D003422 8.8e-34 149.8 298 36.9
Lj1g0002494 Lotus japonicus HOM05D003056 ORTHO05D003422 8.8e-34 149.8 294 35.0
Lj5P217T31 Lonicera japonica HOM05D003056 ORTHO05D003422 3.7e-32 144.4 262 51.1
Aqoxy6G02787 Aquilegia oxysepala HOM05D003056 ORTHO05D003422 6.3e-32 143.7 268 39.6
Ca_24349_v3 Cicer arietinum L. HOM05D003056 ORTHO05D003422 7.0e-31 140.2 303 49.8
Psat4g228080 Pisum sativum HOM05D003056 ORTHO05D003422 9.2e-31 139.8 236 55.5
Glyma.11G001100 Glycine max HOM05D003056 ORTHO05D003422 2.7e-30 138.3 303 44.6
Lj5g0019062 Lotus japonicus HOM05D003056 ORTHO05D003422 5.9e-30 137.1 278 38.1
VMungo1215G2431 Vigna mungo HOM05D003056 ORTHO05D003422 2.3e-29 135.2 315 41.9
TPR.G8314 Trifolium pratense HOM05D003056 ORTHO05D003422 2.9e-29 134.8 304 48.7
VMungo0720G1781 Vigna mungo HOM05D003056 ORTHO05D003422 5.0e-29 134.0 298 32.6
Medtr3g053350 Medicago truncatula HOM05D003056 ORTHO05D003422 5.6e-28 130.6 332 46.1
Phvul.007G042700 Phaseolus vulgaris HOM05D003056 ORTHO05D003422 3.6e-27 127.9 305 36.4
arahy.Tifrunner.gnm1.ann1.45X8ED Arachis hypogaea HOM05D003056 ORTHO05D003422 2.0e-25 122.1 225 38.2
Lalb_Chr21g0308181 Lupinus albus HOM05D003056 ORTHO05D003422 2.0e-25 122.1 308 30.5
arahy.Tifrunner.gnm1.ann1.SCF8I0 Arachis hypogaea HOM05D001373 ORTHO05D003422 1.4e-23 115.9 225 36.4
CDE04G2598 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 9.2e-23 113.2 217 38.2
CDE04G3342 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 2.7e-22 111.7 198 37.4
HPP92_020448 Vanilla planifolia HOM05D003056 ORTHO05D003422 3.5e-22 111.3 305 30.2
Peaxi162Scf00016g02611 Petunia axillaris HOM05D003056 ORTHO05D003422 2.3e-21 108.6 156 49.4
RhsimUnG0126500 Rhododendron simsii HOM05D001121 ORTHO05D001256 3.9e-21 107.8 168 42.3
TAR381G1447 Trochodendron aralioides HOM05D003056 ORTHO05D003422 1.6e-19 102.4 266 31.6
TAR374G0913 Trochodendron aralioides HOM05D003056 ORTHO05D003422 3.4e-17 94.7 195 32.3
MD10G1101600 Malus domestica HOM05D003056 ORTHO05D003422 1.4e-15 89.4 146 38.4
CDE06G2586 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 2.7e-14 85.1 293 26.3
Pp3c22_3230 Physcomitrium patens HOM05D003056 ORTHO05D003422 6.0e-14 84.0 215 35.8
GSVIVG01037880001 Vitis vinifera HOM05D003056 ORTHO05D003422 1.9e-12 79.0 95 51.6
SEGI_12509 Sequoiadendron giganteum HOM05D003056 ORTHO05D003422 2.8e-11 75.1 189 27.5
Mapoly0063s0054 Marchantia polymorpha HOM05D003056 ORTHO05D003422 1.8e-10 72.4 221 39.4
SEGI_36968 Sequoiadendron giganteum HOM05D003056 ORTHO05D003422 1.8e-10 72.4 198 46.0
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 5.2e-10 70.9 292 26.0
PSO675G3831 Papaver somniferum HOM05D003056 ORTHO05D003422 5.2e-10 70.9 302 23.5
Lsat_1_v5_gn_7_53500 Lactuca sativa HOM05D003056 ORTHO05D003422 2.0e-09 68.9 335 23.3
GSVIVG01029248001 Vitis vinifera HOM05D003056 ORTHO05D003422 3.4e-09 68.2 294 24.5
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 4.4e-09 67.8 322 24.5
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 4.4e-09 67.8 236 24.6
CANSAT11G0661 Cannabis sativa HOM05D003056 ORTHO05D003422 1.3e-08 66.2 308 22.4
Haze_21943 Corylus avellana HOM05D003056 ORTHO05D003422 2.9e-08 65.1 296 24.7
Cfa013401 Carpinus fangiana HOM05D003056 ORTHO05D003422 6.4e-08 63.9 302 25.2
QL02p098354 Quercus lobata HOM05D003056 ORTHO05D003422 1.1e-07 63.2 202 25.2
CSS0049173 Camellia sinensis var. sinensis HOM05D003056 ORTHO05D003422 1.9e-07 62.4 167 25.1
Aqoxy7G02351 Aquilegia oxysepala HOM05D003056 ORTHO05D003422 3.2e-07 61.6 263 24.7
Cpa.g.sc95.42 Carica papaya HOM05D003056 ORTHO05D003422 3.2e-07 61.6 302 24.2
vmacro16033 Vaccinium macrocarpon HOM05D003056 ORTHO05D003422 3.2e-07 61.6 195 23.1
ClCG11G012050 Citrullus lanatus HOM05D003056 ORTHO05D003422 4.1e-07 61.2 201 34.3
MELO3C004009.2 Cucumis melo HOM05D003056 ORTHO05D003422 4.1e-07 61.2 201 33.8
Duzib150G0731 Durio zibethinus HOM05D003056 ORTHO05D003422 5.4e-07 60.8 241 24.1
COL.COLO4_29977 Corchorus olitorius HOM05D003056 ORTHO05D003422 7.1e-07 60.5 292 25.0
Rhsim12G0158600 Rhododendron simsii HOM05D003056 ORTHO05D003422 7.1e-07 60.5 275 23.6
Eucgr.C02384 Eucalyptus grandis HOM05D003056 ORTHO05D003422 1.2e-06 59.7 183 25.1
Lalb_Chr15g0084001 Lupinus albus HOM05D003056 ORTHO05D003422 1.2e-06 59.7 204 24.0
Glyma.09G056200 Glycine max HOM05D003056 ORTHO05D003422 1.6e-06 59.3 240 22.1
Manes.14G156601 Manihot esculenta HOM05D003056 ORTHO05D003422 1.6e-06 59.3 253 23.7
PSO541G6324 Papaver somniferum HOM05D003056 ORTHO05D003422 1.6e-06 59.3 301 21.3
Phvul.002G053300 Phaseolus vulgaris HOM05D003056 ORTHO05D003422 1.6e-06 59.3 40 65.0
Thecc.09G174700 Theobroma cacao HOM05D003056 ORTHO05D003422 2.1e-06 58.9 313 21.4
VMungo0464G0716 Vigna mungo HOM05D003056 ORTHO05D003422 2.1e-06 58.9 285 24.2
Lj6g0004675 Lotus japonicus HOM05D003056 ORTHO05D003422 2.7e-06 58.5 289 22.1
PGR044G1733 Punica granatum HOM05D003056 ORTHO05D003422 2.7e-06 58.5 194 23.7
Ciclev10007460m.g Citrus clementina HOM05D003056 ORTHO05D003422 4.6e-06 57.8 280 21.8
FAN17G0903 Fragaria x ananassa HOM05D003056 ORTHO05D003422 4.6e-06 57.8 294 22.4
TWI63G0611 Tripterygium wilfordii HOM05D003056 ORTHO05D003422 4.6e-06 57.8 304 23.4
CAN.G206.197 Capsicum annuum HOM05D003056 ORTHO05D003422 6.0e-06 57.4 185 23.8
FAN07G1351 Fragaria x ananassa HOM05D003056 ORTHO05D003422 6.0e-06 57.4 194 22.7
AUR62033232 Chenopodium quinoa HOM05D003056 ORTHO05D003422 7.8e-06 57.0 206 24.3
Prupe.3G037500 Prunus persica HOM05D003056 ORTHO05D003422 7.8e-06 57.0 297 20.9
Sed0009936 Sechium edule HOM05D003056 ORTHO05D003422 7.8e-06 57.0 206 24.8


User provided reference genes

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