Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g16079 Brassica carinata HOM05D005842 ORTHO05D007077 3.0e-33 145.2 110 100.0
BcaC02g09413 Brassica carinata HOM05D005842 ORTHO05D007077 1.8e-30 136.0 110 96.4
BcaC02g09414 Brassica carinata HOM05D005842 ORTHO05D007077 1.8e-30 136.0 110 96.4
BcaC02g09415 Brassica carinata HOM05D005842 ORTHO05D007077 1.8e-30 136.0 110 96.4
A04p08620 Brassica napus HOM05D005842 ORTHO05D007077 4.4e-29 131.3 111 95.5
BraA04t16556Z Brassica rapa HOM05D005842 ORTHO05D007077 4.4e-29 131.3 111 95.5
SpUn0225_0010 Schrenkiella parvula HOM05D005842 ORTHO05D007077 7.5e-29 130.6 110 93.6
BcaC02g09416 Brassica carinata HOM05D005842 ORTHO05D007077 1.9e-24 115.9 94 97.9
C04p42360 Brassica napus HOM05D005842 ORTHO05D007077 6.2e-23 110.9 102 92.2
Thhalv10026478m.g Eutrema salsugineum HOM05D005842 ORTHO05D007077 1.4e-22 109.8 110 84.5
BcaC07g37350 Brassica carinata HOM05D005842 ORTHO05D007077 1.5e-21 106.3 110 82.7
BcaB04g17686 Brassica carinata HOM05D005842 ORTHO05D007077 2.6e-21 105.5 110 81.8
AL7G43170 Arabidopsis lyrata HOM05D005842 ORTHO05D007077 3.4e-21 105.1 110 82.7
CARHR219200 Cardamine hirsuta HOM05D005842 ORTHO05D007077 1.3e-20 103.2 110 82.7
A08p06740 Brassica napus HOM05D005842 ORTHO05D007077 3.8e-20 101.7 111 82.0
BolC8t47646H Brassica oleracea HOM05D005842 ORTHO05D007077 3.8e-20 101.7 111 82.0
BraA08t32692Z Brassica rapa HOM05D005842 ORTHO05D007077 3.8e-20 101.7 111 82.0
Aa31LG9G4090 Aethionema arabicum HOM05D005842 ORTHO05D007077 1.4e-19 99.8 121 76.9
AT4G13560 Arabidopsis thaliana HOM05D005842 ORTHO05D007077 3.2e-19 98.6 110 80.0
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 2.7e-18 95.5 110 50.9
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 3.5e-18 95.1 108 53.7
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 5.1e-17 91.3 110 50.0
Carub.0007s2898 Capsella rubella HOM05D005842 ORTHO05D007077 8.7e-17 90.5 110 77.3
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 1.1e-16 90.1 110 49.1
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 4.3e-16 88.2 110 49.1
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 1.2e-15 86.7 111 49.5
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 3.6e-15 85.1 107 46.7
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 6.2e-15 84.3 107 45.8
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 6.2e-15 84.3 110 48.2
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 6.2e-15 84.3 108 47.2
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 6.2e-15 84.3 108 47.2
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 1.4e-14 83.2 111 46.8
C08p07940 Brassica napus HOM05D005842 ORTHO05D007077 3.1e-14 82.0 111 74.8
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 1.5e-13 79.7 110 45.5
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 2.6e-13 79.0 106 46.2
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 4.4e-13 78.2 118 46.6
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 5.8e-13 77.8 108 44.4
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 7.6e-13 77.4 109 45.0
C03p53480 Brassica napus HOM05D005842 ORTHO05D007077 9.9e-13 77.0 94 53.2
BcaB06g26603 Brassica carinata HOM05D005842 ORTHO05D007077 2.2e-12 75.9 94 55.3
Dinv29781 Davidia involucrata HOM05D005842 ORTHO05D007077 2.9e-12 75.5 125 44.0
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 4.9e-12 74.7 94 54.3
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 4.9e-12 74.7 107 42.1
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 6.4e-12 74.3 107 42.1
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 1.1e-11 73.6 108 42.6
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 1.9e-11 72.8 108 41.7
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 2.4e-11 72.4 107 39.3
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 2.4e-11 72.4 108 42.6
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 9.3e-11 70.5 109 41.3
A07p08140 Brassica napus HOM05D005842 ORTHO05D007077 1.2e-10 70.1 107 61.7
C07p12280 Brassica napus HOM05D005842 ORTHO05D007077 1.2e-10 70.1 107 61.7
BolC7t41695H Brassica oleracea HOM05D005842 ORTHO05D007077 1.2e-10 70.1 107 61.7
BraA07t28597Z Brassica rapa HOM05D005842 ORTHO05D007077 1.2e-10 70.1 107 61.7
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 2.1e-10 69.3 106 49.1
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 3.5e-10 68.6 108 37.0
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 6.0e-10 67.8 106 49.1
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 6.0e-10 67.8 106 49.1
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 6.0e-10 67.8 105 40.0
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 1.3e-09 66.6 107 39.3
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 1.3e-09 66.6 107 39.3
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 1.3e-09 66.6 107 39.3
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 1.3e-09 66.6 107 39.3
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 1.3e-09 66.6 107 39.3
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 1.3e-09 66.6 107 39.3
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 1.3e-09 66.6 107 39.3
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 1.3e-09 66.6 107 39.3
Nn1g03040 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.7e-09 66.2 106 38.7
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.7e-09 66.2 106 41.5
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 1.7e-09 66.2 109 37.6
PSO210G3477 Papaver somniferum HOM05D005842 ORTHO05D007077 3.0e-09 65.5 107 52.3
PSO210G4408 Papaver somniferum HOM05D005842 ORTHO05D007077 3.0e-09 65.5 107 52.3
PSO764G0017 Papaver somniferum HOM05D005842 ORTHO05D007077 3.9e-09 65.1 107 49.5
PSO384G4311 Papaver somniferum HOM05D005842 ORTHO05D007077 1.1e-08 63.5 106 51.9
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 1.9e-08 62.8 109 37.6
CANSAT78G1061 Cannabis sativa HOM05D005842 ORTHO05D007077 3.3e-08 62.0 104 59.6
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 4.3e-08 61.6 107 38.3
Lalb_Chr01g0011321 Lupinus albus HOM05D005842 ORTHO05D007077 4.3e-08 61.6 108 39.8
Rhsim09G0044300 Rhododendron simsii HOM05D005842 ORTHO05D007077 4.3e-08 61.6 41 70.7
Nn1g03042 Nelumbo nucifera HOM05D005842 ORTHO05D007077 5.6e-08 61.2 106 44.3
Nn1g03039 Nelumbo nucifera HOM05D005842 ORTHO05D007077 9.6e-08 60.5 104 45.2
CANSAT78G1849 Cannabis sativa HOM05D005842 ORTHO05D007077 1.6e-07 59.7 101 59.4
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 2.8e-07 58.9 106 35.8
SalBow2G2733 Salvia bowleyana HOM05D005842 ORTHO05D007077 3.6e-07 58.5 105 52.4
Cfa014832 Carpinus fangiana HOM05D005842 ORTHO05D007077 4.8e-07 58.2 108 64.8
Atru.chr13.2235 Acer truncatum HOM05D005842 ORTHO05D007077 6.2e-07 57.8 41 65.9
PGR142G0529 Punica granatum HOM05D005842 ORTHO05D007077 8.1e-07 57.4 108 54.6
TAR362G0228 Trochodendron aralioides HOM05D005842 ORTHO05D007077 8.1e-07 57.4 106 38.7
PSO266G0009 Papaver somniferum HOM05D005842 ORTHO05D007077 1.1e-06 57.0 106 48.1
PSO266G0028 Papaver somniferum HOM05D005842 ORTHO05D007077 1.1e-06 57.0 106 48.1
PSO384G5008 Papaver somniferum HOM05D005842 ORTHO05D007077 1.4e-06 56.6 106 50.9
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 2.4e-06 55.8 92 37.0
Duzib151G0923 Durio zibethinus HOM05D005842 ORTHO05D007077 5.3e-06 54.7 35 77.1
Oeu007544.1 Olea europaea HOM05D005842 ORTHO05D007077 5.3e-06 54.7 87 42.5
Sp3g22000 Schrenkiella parvula HOM05D005842 ORTHO05D007077 5.3e-06 54.7 108 54.6
Actinidia08812 Actinidia chinensis HOM05D010524 ORTHO05D010461 9.0e-06 53.9 105 60.0
Medtr1g045980 Medicago truncatula HOM05D005842 ORTHO05D007077 9.0e-06 53.9 125 53.6


User provided reference genes

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