Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g16059 Brassica carinata HOM05D002428 ORTHO05D008664 6.3e-171 604.4 387 100.0
BolC4t25803H Brassica oleracea HOM05D002428 ORTHO05D008664 1.3e-144 516.9 387 89.4
C04p42250 Brassica napus HOM05D002428 ORTHO05D008664 2.9e-144 515.8 387 88.6
BcaC02g09399 Brassica carinata HOM05D002428 ORTHO05D008664 2.5e-143 512.7 387 88.9
BraA04t16542Z Brassica rapa HOM05D002428 ORTHO05D008664 2.1e-134 483.0 392 85.5
Sp7g11440 Schrenkiella parvula HOM05D002428 ORTHO05D008664 1.5e-132 476.9 371 83.3
A04p08510 Brassica napus HOM05D002428 ORTHO05D008664 1.7e-131 473.4 394 84.3
Thhalv10025497m.g Eutrema salsugineum HOM05D002428 ORTHO05D008664 8.3e-115 417.9 369 77.8
Carub.0007s2880 Capsella rubella HOM05D002428 ORTHO05D008664 1.8e-109 400.2 379 73.4
AL7G42860 Arabidopsis lyrata HOM05D002428 ORTHO05D008664 2.6e-108 396.4 378 73.5
CARHR219440 Cardamine hirsuta HOM05D002428 ORTHO05D008664 2.4e-106 389.8 377 71.9
Aa31LG9G3990 Aethionema arabicum HOM05D002428 ORTHO05D008664 1.1e-103 380.9 379 69.7
THA.LOC104808718 Tarenaya hassleriana HOM05D002428 ORTHO05D008664 2.1e-89 333.6 375 64.0
Cpa.g.sc59.123 Carica papaya HOM05D002428 ORTHO05D008664 9.3e-74 281.6 369 60.2
Dinv38250 Davidia involucrata HOM05D002428 ORTHO05D008664 3.0e-72 276.6 395 54.4
Thecc.04G206600 Theobroma cacao HOM05D002428 ORTHO05D008664 5.1e-72 275.8 339 59.3
Gohir.D10G143300 Gossypium hirsutum HOM05D002428 ORTHO05D008664 1.5e-71 274.2 390 54.9
Gohir.A10G122700 Gossypium hirsutum HOM05D002428 ORTHO05D008664 1.6e-70 270.8 336 57.7
MELO3C006321.2 Cucumis melo HOM05D002428 ORTHO05D008664 2.1e-70 270.4 372 52.2
CsaV3_3G011080 Cucumis sativus L. HOM05D002428 ORTHO05D008664 4.8e-70 269.2 372 57.3
Gorai.011G160100 Gossypium raimondii HOM05D002428 ORTHO05D008664 1.4e-69 267.7 344 58.7
CiPaw.01G122800 Carya illinoinensis HOM05D002428 ORTHO05D008664 1.8e-69 267.3 403 51.9
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 5.3e-69 265.8 357 53.8
COL.COLO4_20264 Corchorus olitorius HOM05D002428 ORTHO05D008664 9.0e-69 265.0 386 53.9
RcHm_v2.0_Chr4g0385901 Rosa chinensis HOM05D002428 ORTHO05D008664 1.5e-68 264.2 379 52.8
Sed0003366 Sechium edule HOM05D002428 ORTHO05D008664 3.4e-68 263.1 348 52.0
Duzib151G0475 Durio zibethinus HOM05D002428 ORTHO05D008664 4.5e-68 262.7 385 55.1
TAR365G0194 Trochodendron aralioides HOM05D002428 ORTHO05D008664 7.6e-68 261.9 301 54.5
Solyc09g091830.4 Solanum lycopersicum HOM05D002428 ORTHO05D008664 1.3e-67 261.2 387 54.5
Sopen09g034720 Solanum pennellii HOM05D002428 ORTHO05D008664 1.3e-67 261.2 387 52.5
Oeu006723.1 Olea europaea HOM05D002428 ORTHO05D008664 1.7e-67 260.8 357 51.3
MBI07_g22621_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D008664 6.5e-67 258.8 396 52.0
TWI73G0822 Tripterygium wilfordii HOM05D002428 ORTHO05D008664 1.1e-66 258.1 381 53.3
Prupe.1G004900 Prunus persica HOM05D002428 ORTHO05D008664 1.9e-66 257.3 344 54.9
Hma1.2p1_4144F.1_g338390 Hydrangea macrophylla HOM05D002428 ORTHO05D008664 9.3e-66 255.0 341 54.5
CSS0043127 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 1.6e-65 254.2 376 52.1
FvH4_4g00470 Fragaria vesca HOM05D002428 ORTHO05D008664 2.1e-65 253.8 371 52.3
MSTRG.9823 Avicennia marina HOM05D002428 ORTHO05D008664 2.7e-65 253.4 338 52.4
CANSAT78G1408 Cannabis sativa HOM05D002428 ORTHO05D008664 2.7e-65 253.4 408 51.2
ClCG05G003410 Citrullus lanatus HOM05D002428 ORTHO05D008664 2.7e-65 253.4 365 52.6
FAN12G4076 Fragaria x ananassa HOM05D002428 ORTHO05D008664 4.6e-65 252.7 284 52.5
MD04G1005000 Malus domestica HOM05D002428 ORTHO05D008664 6.0e-65 252.3 347 55.3
Potri.001G049900 Populus trichocarpa HOM05D002428 ORTHO05D008664 1.3e-64 251.1 416 49.0
Glyma.20G198100 Glycine max HOM05D002428 ORTHO05D008664 6.7e-64 248.8 396 53.5
AT4G13670 Arabidopsis thaliana HOM05D002428 ORTHO05D008664 3.3e-63 246.5 272 68.0
Lsat_1_v5_gn_6_59880 Lactuca sativa HOM05D002428 ORTHO05D008664 4.3e-63 246.1 382 51.8
SalBow8G5518 Salvia bowleyana HOM05D002428 ORTHO05D008664 2.2e-62 243.8 381 50.4
Nn1g07803 Nelumbo nucifera HOM05D002428 ORTHO05D008664 3.7e-62 243.0 402 50.2
arahy.Tifrunner.gnm1.ann1.N1R11Y Arachis hypogaea HOM05D002428 ORTHO05D008664 4.8e-62 242.7 403 49.4
Ciclev10005170m.g Citrus clementina HOM05D002428 ORTHO05D008664 6.3e-62 242.3 381 50.7
Manes.15G051900 Manihot esculenta HOM05D002428 ORTHO05D008664 1.4e-61 241.1 387 49.9
arahy.Tifrunner.gnm1.ann1.HBBQ58 Arachis hypogaea HOM05D002428 ORTHO05D008664 1.8e-61 240.7 393 50.4
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.8e-61 240.7 281 50.9
Migut.G00668 Erythranthe guttata HOM05D002428 ORTHO05D008664 2.4e-61 240.4 384 50.0
Cc03_g07620 Coffea canephora HOM05D002428 ORTHO05D008664 3.1e-61 240.0 394 46.7
Glyma.10G192300 Glycine max HOM05D002428 ORTHO05D008664 5.3e-61 239.2 388 52.6
CAN.G500.15 Capsicum annuum HOM05D002428 ORTHO05D008664 6.9e-61 238.8 277 56.0
PGSC0003DMG400029637 Solanum tuberosum HOM05D002428 ORTHO05D008664 9.0e-61 238.4 386 53.4
Haze_11594 Corylus avellana HOM05D002428 ORTHO05D008664 1.5e-60 237.7 492 47.2
Nitab4.5_0004974g0040 Nicotiana tabacum HOM05D002428 ORTHO05D008664 5.9e-60 235.7 396 49.7
Sabra01G0034800 Salix brachista HOM05D002428 ORTHO05D008664 1.0e-59 235.0 275 51.3
PGR142G3513 Punica granatum HOM05D002428 ORTHO05D008664 2.2e-59 233.8 366 49.5
QL06p024024 Quercus lobata HOM05D002428 ORTHO05D008664 1.4e-58 231.1 267 53.2
Psat6g141320 Pisum sativum HOM05D002428 ORTHO05D008664 1.9e-58 230.7 293 56.0
unitig_747.g21693 Utricularia gibba HOM05D002428 ORTHO05D008664 5.5e-58 229.2 367 49.0
Aqoxy2G03893 Aquilegia oxysepala HOM05D002428 ORTHO05D008664 9.4e-58 228.4 285 53.7
Medtr1g072690 Medicago truncatula HOM05D002428 ORTHO05D008664 9.4e-58 228.4 294 54.1
Ca_09779_v3 Cicer arietinum L. HOM05D002428 ORTHO05D008664 1.6e-57 227.6 290 47.6
CSS0042862 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 6.1e-57 225.7 394 47.2
GSVIVG01029077001 Vitis vinifera HOM05D002428 ORTHO05D008664 6.1e-57 225.7 238 63.0
Rhsim09G0054700 Rhododendron simsii HOM05D002428 ORTHO05D008664 2.3e-56 223.8 274 52.2
Os04g0514400 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D008664 3.0e-56 223.4 198 62.1
Rhsim09G0054100 Rhododendron simsii HOM05D002428 ORTHO05D008664 8.8e-56 221.9 274 51.8
Peaxi162Scf00047g00729 Petunia axillaris HOM05D002428 ORTHO05D008664 1.1e-55 221.5 265 51.3
HanXRQChr07g0185701 Helianthus annuus HOM05D002428 ORTHO05D008664 3.3e-55 219.9 383 49.6
TPR.G1546 Trifolium pratense HOM05D002428 ORTHO05D008664 3.3e-55 219.9 289 56.1
DCAR_026600 Daucus carota HOM05D002428 ORTHO05D008664 2.8e-54 216.9 406 49.8
Eucgr.H00072 Eucalyptus grandis HOM05D002428 ORTHO05D008664 2.8e-54 216.9 375 51.2
Lj5g0020317 Lotus japonicus HOM05D002428 ORTHO05D008664 3.7e-54 216.5 373 51.5
HPP92_025384 Vanilla planifolia HOM05D002428 ORTHO05D008664 1.4e-53 214.5 213 56.8
SGA_v2.0_scaffold72G24054 Striga asiatica HOM05D002428 ORTHO05D008664 1.8e-53 214.2 345 50.7
Zm00001eb426530 Zea mays HOM05D002428 ORTHO05D008664 5.3e-53 212.6 221 54.8
Lalb_Chr02g0150781 Lupinus albus HOM05D002428 ORTHO05D008664 3.4e-52 209.9 269 52.8
ATR0736G155 Amborella trichopoda HOM05D002428 ORTHO05D008664 1.3e-51 208.0 292 47.3
CSS0022946 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 6.5e-51 205.7 372 46.2
Ah.01g006100 Amaranthus hybridus HOM05D002428 ORTHO05D008664 1.9e-50 204.1 264 46.6
vmacro00485 Vaccinium macrocarpon HOM05D002428 ORTHO05D008664 9.4e-50 201.8 457 41.6
EL10Ac9g21669 Beta vulgaris HOM05D002428 ORTHO05D008664 1.2e-49 201.4 274 46.0
ECA233G2351 Erigeron canadensis HOM05D002428 ORTHO05D008664 1.6e-49 201.1 268 49.3
Nitab4.5_0003750g0020 Nicotiana tabacum HOM05D002428 ORTHO05D008664 2.7e-49 200.3 272 50.4
Sc13g0000090 Simmondsia chinensis HOM05D002428 ORTHO05D008664 6.1e-49 199.1 197 55.3
PSO063G5917 Papaver somniferum HOM05D002428 ORTHO05D008664 6.7e-48 195.7 365 42.7
Cfa014927 Carpinus fangiana HOM05D002428 ORTHO05D008664 1.1e-47 194.9 376 48.1
Ah.01g018930 Amaranthus hybridus HOM05D002428 ORTHO05D008664 1.5e-47 194.5 260 45.8
Actinidia35874 Actinidia chinensis HOM05D002428 ORTHO05D008664 2.6e-47 193.7 181 58.6
PSO017G5948 Papaver somniferum HOM05D002428 ORTHO05D008664 5.7e-47 192.6 346 43.4
Actinidia25626 Actinidia chinensis HOM05D002428 ORTHO05D008664 1.1e-45 188.3 355 46.5
SEGI_22388 Sequoiadendron giganteum HOM05D002428 ORTHO05D008664 5.3e-45 186.0 195 47.7
CDE08G1693 Ceratophyllum demersum HOM05D002428 ORTHO05D008664 5.9e-44 182.6 277 43.7
Lj6A561G51 Lonicera japonica HOM05D002428 ORTHO05D008664 1.0e-43 181.8 456 39.0
Phvul.010G104000 Phaseolus vulgaris HOM05D002428 ORTHO05D008664 1.0e-43 181.8 265 50.6
AUR62010416 Chenopodium quinoa HOM05D002428 ORTHO05D008664 5.0e-43 179.5 200 51.5
AUR62016799 Chenopodium quinoa HOM05D002428 ORTHO05D008664 1.6e-41 174.5 181 54.1
Atru.chr4.1737 Acer truncatum HOM05D002428 ORTHO05D008664 5.2e-40 169.5 166 57.8
Prupe.3G076100 Prunus persica HOM05D002428 ORTHO05D008664 5.2e-40 169.5 181 54.1
Pp3c19_7640 Physcomitrium patens HOM05D002428 ORTHO05D008664 2.4e-37 160.6 207 44.9
CDE05G2575 Ceratophyllum demersum HOM05D002428 ORTHO05D008664 1.9e-34 151.0 269 42.4
CBR_g30251 Chara braunii HOM05D002428 ORTHO05D008664 1.2e-31 141.7 216 41.2
Mapoly0004s0042 Marchantia polymorpha HOM05D002428 ORTHO05D008664 1.3e-30 138.3 208 40.9
SMO358G0076 Selaginella moellendorffii HOM05D002428 ORTHO05D008664 3.7e-30 136.7 185 42.7
AagrBONN_evm.TU.Sc2ySwM_344.4007 Anthoceros agrestis HOM05D002428 ORTHO05D008664 5.9e-28 129.4 194 41.2
AL7G42850 Arabidopsis lyrata HOM05D002428 ORTHO05D008664 3.3e-18 97.1 161 47.2
Oeu022362.1 Olea europaea HOM05D002428 ORTHO05D008664 6.1e-17 92.8 124 47.6
Prupe.1G083800 Prunus persica HOM05D002020 ORTHO05D002046 2.8e-14 84.0 66 68.2
SGA_v2.0_scaffold935G53736 Striga asiatica HOM05D002428 ORTHO05D008664 3.9e-11 73.6 163 52.1
Hma1.2p1_1076F.1_g254570 Hydrangea macrophylla HOM05D002428 ORTHO05D008664 3.6e-09 67.0 77 53.2


User provided reference genes

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