Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15901 Brassica carinata HOM05D003320 ORTHO05D003941 1.9e-68 262.3 124 100.0
BcaB03g15895 Brassica carinata HOM05D003320 ORTHO05D003941 1.3e-58 229.6 191 64.4
BraA08t34965Z Brassica rapa HOM05D003320 ORTHO05D003941 2.5e-36 155.6 71 94.4
AT1G18610 Arabidopsis thaliana HOM05D003320 ORTHO05D003941 1.6e-35 152.9 70 90.0
BraA06t24596Z Brassica rapa HOM05D003320 ORTHO05D003941 1.6e-35 152.9 71 87.3
Sp1g16580 Schrenkiella parvula HOM05D003320 ORTHO05D003941 1.6e-35 152.9 71 88.7
A08p30320 Brassica napus HOM05D003320 ORTHO05D003941 2.1e-35 152.5 71 91.5
CARHR019230 Cardamine hirsuta HOM05D003320 ORTHO05D003941 2.1e-35 152.5 70 90.0
BcaB07g31880 Brassica carinata HOM05D003320 ORTHO05D003941 3.6e-35 151.8 71 85.9
C08p18770 Brassica napus HOM05D003320 ORTHO05D003941 3.6e-35 151.8 71 91.5
A06p14720 Brassica napus HOM05D003320 ORTHO05D003941 4.7e-35 151.4 71 85.9
Thhalv10007275m.g Eutrema salsugineum HOM05D003320 ORTHO05D003941 4.7e-35 151.4 70 88.6
BcaC05g25756 Brassica carinata HOM05D003320 ORTHO05D003941 1.4e-34 149.8 71 84.5
C05p16870 Brassica napus HOM05D003320 ORTHO05D003941 1.4e-34 149.8 71 84.5
BolC5t30390H Brassica oleracea HOM05D003320 ORTHO05D003941 1.8e-34 149.4 71 84.5
BolC8t49503H Brassica oleracea HOM05D003320 ORTHO05D003941 1.8e-34 149.4 71 90.1
Carub.0001s1824 Capsella rubella HOM05D003320 ORTHO05D003941 1.8e-34 149.4 70 87.1
BcaB03g13638 Brassica carinata HOM05D003320 ORTHO05D003941 6.7e-34 147.5 71 88.7
THA.LOC104808040 Tarenaya hassleriana HOM05D003320 ORTHO05D003941 9.7e-33 143.7 70 85.7
Cpa.g.sc94.74 Carica papaya HOM05D003320 ORTHO05D003941 3.7e-32 141.7 70 82.9
COL.COLO4_24318 Corchorus olitorius HOM05D003320 ORTHO05D003941 1.1e-31 140.2 70 81.4
Thecc.03G104500 Theobroma cacao HOM05D003320 ORTHO05D003941 1.1e-31 140.2 70 81.4
Eucgr.B00616 Eucalyptus grandis HOM05D003320 ORTHO05D003941 1.8e-31 139.4 70 81.4
QL10p019950 Quercus lobata HOM05D003320 ORTHO05D003941 1.8e-31 139.4 70 81.4
Aa31LG7G3370 Aethionema arabicum HOM05D003320 ORTHO05D003941 2.4e-31 139.0 70 80.0
Manes.06G082800 Manihot esculenta HOM05D003320 ORTHO05D003941 2.4e-31 139.0 70 81.4
THA.LOC104813890 Tarenaya hassleriana HOM05D003320 ORTHO05D003941 3.1e-31 138.7 70 81.4
TWI60G0048 Tripterygium wilfordii HOM05D003320 ORTHO05D003941 3.1e-31 138.7 69 82.6
TWI60G1142 Tripterygium wilfordii HOM05D003320 ORTHO05D003941 3.1e-31 138.7 69 82.6
Cfa019354 Carpinus fangiana HOM05D003320 ORTHO05D003941 4.1e-31 138.3 70 80.0
Haze_07745 Corylus avellana HOM05D003320 ORTHO05D003941 4.1e-31 138.3 70 80.0
Duzib205G0721 Durio zibethinus HOM05D003320 ORTHO05D003941 4.1e-31 138.3 70 80.0
Gohir.A12G183500 Gossypium hirsutum HOM05D003320 ORTHO05D003941 4.1e-31 138.3 70 80.0
Duzib068G0415 Durio zibethinus HOM05D000874 ORTHO05D003941 7.0e-31 137.5 70 80.0
TWI81G0870 Tripterygium wilfordii HOM05D003320 ORTHO05D003941 7.0e-31 137.5 69 81.2
Manes.14G087000 Manihot esculenta HOM05D003320 ORTHO05D003941 1.2e-30 136.7 70 78.6
PGR083G0488 Punica granatum HOM05D003320 ORTHO05D003941 1.6e-30 136.3 70 80.0
Ciclev10019467m.g Citrus clementina HOM05D003320 ORTHO05D003941 2.6e-30 135.6 70 77.1
Potri.015G059400 Populus trichocarpa HOM05D003320 ORTHO05D003941 2.6e-30 135.6 70 77.1
GSVIVG01008118001 Vitis vinifera HOM05D003320 ORTHO05D003941 2.6e-30 135.6 70 78.6
MELO3C017236.2 Cucumis melo HOM05D003320 ORTHO05D003941 3.5e-30 135.2 70 75.7
CsaV3_1G003060 Cucumis sativus L. HOM05D003320 ORTHO05D003941 3.5e-30 135.2 70 75.7
ATR0827G154 Amborella trichopoda HOM05D003320 ORTHO05D003941 5.9e-30 134.4 71 76.1
Gohir.D12G186400 Gossypium hirsutum HOM05D003320 ORTHO05D003941 1.3e-29 133.3 70 77.1
Gorai.008G199800 Gossypium raimondii HOM05D003320 ORTHO05D003941 1.3e-29 133.3 70 77.1
CiPaw.11G055500 Carya illinoinensis HOM05D003320 ORTHO05D003941 2.2e-29 132.5 70 75.7
MBI16_g10850_MAGBIO Magnolia biondii HOM05D003320 ORTHO05D003941 2.2e-29 132.5 71 73.2
Sabra15G0084900 Salix brachista HOM05D003320 ORTHO05D003941 2.9e-29 132.1 70 74.3
SEGI_01727 Sequoiadendron giganteum HOM05D003320 ORTHO05D003941 2.9e-29 132.1 71 76.1
arahy.Tifrunner.gnm1.ann1.16QCS4 Arachis hypogaea HOM05D003320 ORTHO05D003941 3.8e-29 131.7 70 72.9
arahy.Tifrunner.gnm1.ann1.XBA6AL Arachis hypogaea HOM05D003320 ORTHO05D003941 3.8e-29 131.7 70 72.9
Carub.0002s2096 Capsella rubella HOM05D003320 ORTHO05D003941 3.8e-29 131.7 70 77.1
Thhalv10019464m.g Eutrema salsugineum HOM05D003320 ORTHO05D003941 3.8e-29 131.7 70 77.1
VMungo1215G1878 Vigna mungo HOM05D003320 ORTHO05D003941 3.8e-29 131.7 70 75.7
AT1G74150 Arabidopsis thaliana HOM05D003320 ORTHO05D003941 5.0e-29 131.3 70 77.1
Phvul.003G183500 Phaseolus vulgaris HOM05D003320 ORTHO05D003941 6.5e-29 131.0 70 74.3
Sabra12G0045000 Salix brachista HOM05D003320 ORTHO05D003941 6.5e-29 131.0 70 75.7
TAR629G1284 Trochodendron aralioides HOM05D003320 ORTHO05D003941 6.5e-29 131.0 70 74.3
AL2G34050 Arabidopsis lyrata HOM05D003320 ORTHO05D003941 8.5e-29 130.6 70 74.3
BcaC08g46820 Brassica carinata HOM05D003320 ORTHO05D003941 8.5e-29 130.6 70 75.7
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 8.5e-29 130.6 70 75.7
BolC6t39864H Brassica oleracea HOM05D003320 ORTHO05D003941 8.5e-29 130.6 70 75.7
ClCG06G015540 Citrullus lanatus HOM05D003320 ORTHO05D003941 8.5e-29 130.6 75 72.0
Dinv22765 Davidia involucrata HOM05D003320 ORTHO05D003941 8.5e-29 130.6 70 74.3
Nn3g17480 Nelumbo nucifera HOM05D003320 ORTHO05D003941 8.5e-29 130.6 70 75.7
RcHm_v2.0_Chr7g0183311 Rosa chinensis HOM05D003320 ORTHO05D003941 8.5e-29 130.6 70 74.3
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 1.1e-28 130.2 70 74.3
MD14G1213900 Malus domestica HOM05D003320 ORTHO05D003941 1.1e-28 130.2 70 75.7
Nn4g23462 Nelumbo nucifera HOM05D003320 ORTHO05D003941 1.1e-28 130.2 70 75.7
CARHR067300 Cardamine hirsuta HOM05D003320 ORTHO05D003941 1.5e-28 129.8 70 74.3
Potri.012G062100 Populus trichocarpa HOM05D003320 ORTHO05D003941 1.5e-28 129.8 70 75.7
Rhsim08G0144000 Rhododendron simsii HOM05D003320 ORTHO05D003941 1.5e-28 129.8 70 75.7
Aqoxy3G03660 Aquilegia oxysepala HOM05D003320 ORTHO05D003941 1.9e-28 129.4 70 74.3
CANSAT25G3609 Cannabis sativa HOM05D003320 ORTHO05D003941 1.9e-28 129.4 70 74.3
FAN08G2691 Fragaria x ananassa HOM05D003320 ORTHO05D003941 1.9e-28 129.4 70 74.3
FAN13G0636 Fragaria x ananassa HOM05D003320 ORTHO05D003941 1.9e-28 129.4 70 74.3
FAN18G0159 Fragaria x ananassa HOM05D003320 ORTHO05D003941 1.9e-28 129.4 70 74.3
Gohir.D03G097300 Gossypium hirsutum HOM05D003320 ORTHO05D003941 1.9e-28 129.4 70 77.1
Gorai.003G102300 Gossypium raimondii HOM05D003320 ORTHO05D003941 1.9e-28 129.4 70 77.1
vmacro17621 Vaccinium macrocarpon HOM05D003320 ORTHO05D003941 1.9e-28 129.4 70 74.3
Glyma.05G019700 Glycine max HOM05D003320 ORTHO05D003941 2.5e-28 129.0 70 74.3
Prupe.5G207100 Prunus persica HOM05D003320 ORTHO05D003941 2.5e-28 129.0 70 74.3
C02p31630 Brassica napus HOM05D003320 ORTHO05D003941 3.2e-28 128.6 70 75.7
Gohir.A03G070900 Gossypium hirsutum HOM05D003320 ORTHO05D003941 4.2e-28 128.3 70 77.1
Sed0009849 Sechium edule HOM05D003320 ORTHO05D003941 4.2e-28 128.3 70 71.4
BcaB05g24829 Brassica carinata HOM05D003320 ORTHO05D003941 5.5e-28 127.9 70 72.9
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 5.5e-28 127.9 70 72.9
FvH4_5g13650 Fragaria vesca HOM05D003320 ORTHO05D003941 5.5e-28 127.9 70 72.9
BcaC03g15484 Brassica carinata HOM05D003320 ORTHO05D003941 7.2e-28 127.5 70 74.3
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 7.2e-28 127.5 70 72.9
CDE04G0470 Ceratophyllum demersum HOM05D003320 ORTHO05D003941 7.2e-28 127.5 71 73.2
CDE06G2715 Ceratophyllum demersum HOM05D003320 ORTHO05D003941 7.2e-28 127.5 71 71.8
Glyma.17G080100 Glycine max HOM05D003320 ORTHO05D003941 7.2e-28 127.5 70 74.3
BolC2t09195H Brassica oleracea HOM05D003320 ORTHO05D003941 9.4e-28 127.1 70 74.3
Eucgr.B00619 Eucalyptus grandis HOM05D003320 ORTHO05D003941 9.4e-28 127.1 70 71.4
MSTRG.4445 Avicennia marina HOM05D003320 ORTHO05D003941 1.2e-27 126.7 70 70.0
CSS0049494 Camellia sinensis var. sinensis HOM05D003320 ORTHO05D003941 1.6e-27 126.3 70 71.4
Migut.D01756 Erythranthe guttata HOM05D003320 ORTHO05D003941 1.6e-27 126.3 70 70.0
Migut.L00877 Erythranthe guttata HOM05D003320 ORTHO05D003941 1.6e-27 126.3 70 70.0
Lalb_Chr13g0302781 Lupinus albus HOM05D003320 ORTHO05D003941 1.6e-27 126.3 70 71.4
A02p19120 Brassica napus HOM05D003320 ORTHO05D003941 2.1e-27 125.9 70 74.3
BraA02t06960Z Brassica rapa HOM05D003320 ORTHO05D003941 2.1e-27 125.9 70 74.3
CSS0013666 Camellia sinensis var. sinensis HOM05D003320 ORTHO05D003941 2.7e-27 125.6 70 71.4
Cc00_g03390 Coffea canephora HOM05D003320 ORTHO05D003941 2.7e-27 125.6 71 70.4
Eucgr.B00621 Eucalyptus grandis HOM05D003320 ORTHO05D003941 2.7e-27 125.6 70 70.0
Lj9A439T50 Lonicera japonica HOM05D003320 ORTHO05D003941 2.7e-27 125.6 70 72.9
AUR62039651 Chenopodium quinoa HOM05D003320 ORTHO05D003941 3.6e-27 125.2 70 71.4
TAR371G0581 Trochodendron aralioides HOM05D000874 ORTHO05D003941 3.6e-27 125.2 70 70.0
Glyma.06G204800 Glycine max HOM05D003320 ORTHO05D003941 4.7e-27 124.8 70 72.9
Hma1.2p1_0060F.1_g032950 Hydrangea macrophylla HOM05D003320 ORTHO05D003941 4.7e-27 124.8 70 68.6
Phvul.009G202800 Phaseolus vulgaris HOM05D003320 ORTHO05D003941 4.7e-27 124.8 70 72.9
TPR.G1978 Trifolium pratense HOM05D003320 ORTHO05D003941 6.1e-27 124.4 70 68.6
BcaB05g24833 Brassica carinata HOM05D003320 ORTHO05D003941 8.0e-27 124.0 70 72.9
Eucgr.B00617 Eucalyptus grandis HOM05D003320 ORTHO05D003941 8.0e-27 124.0 70 68.6
Glyma.04G160700 Glycine max HOM05D003320 ORTHO05D003941 8.0e-27 124.0 70 71.4
PSO017G6858 Papaver somniferum HOM05D003320 ORTHO05D003941 8.0e-27 124.0 70 70.0
PSO478G2958 Papaver somniferum HOM05D003320 ORTHO05D003941 8.0e-27 124.0 70 70.0
Hund02571 Selenicereus undatus HOM05D003320 ORTHO05D003941 8.0e-27 124.0 70 70.0
HPP92_027115 Vanilla planifolia HOM05D003320 ORTHO05D003941 8.0e-27 124.0 70 70.0
AUR62021532 Chenopodium quinoa HOM05D003320 ORTHO05D003941 1.4e-26 123.2 70 68.6
Lj4g0022383 Lotus japonicus HOM05D003320 ORTHO05D003941 1.4e-26 123.2 69 71.0
SGA_v2.0_scaffold114G31918 Striga asiatica HOM05D003320 ORTHO05D003941 1.4e-26 123.2 70 68.6
HPP92_013434 Vanilla planifolia HOM05D003320 ORTHO05D003941 2.3e-26 122.5 70 68.6
DCAR_023161 Daucus carota HOM05D003320 ORTHO05D003941 3.0e-26 122.1 70 67.1
MD06G1203300 Malus domestica HOM05D003320 ORTHO05D003941 3.0e-26 122.1 70 70.0
DCAR_011563 Daucus carota HOM05D003320 ORTHO05D003941 4.0e-26 121.7 70 67.1
Mapoly0031s0090 Marchantia polymorpha HOM05D003320 ORTHO05D003941 4.0e-26 121.7 70 70.0
EL10Ac5g11158 Beta vulgaris HOM05D003320 ORTHO05D003941 5.2e-26 121.3 70 70.0
Eucgr.B00620 Eucalyptus grandis HOM05D003320 ORTHO05D003941 5.2e-26 121.3 70 68.6
Medtr4g109680 Medicago truncatula HOM05D003320 ORTHO05D003941 5.2e-26 121.3 70 65.7
ECA232G1579 Erigeron canadensis HOM05D003320 ORTHO05D003941 6.7e-26 120.9 70 72.9
VMungo1309G1392 Vigna mungo HOM05D003320 ORTHO05D003941 6.7e-26 120.9 70 70.0
Ca_21762_v3 Cicer arietinum L. HOM05D003320 ORTHO05D003941 8.8e-26 120.6 70 64.3
AagrBONN_evm.TU.Sc2ySwM_117.209 Anthoceros agrestis HOM05D003320 ORTHO05D003941 1.5e-25 119.8 70 67.1
BcaB05g24831 Brassica carinata HOM05D003320 ORTHO05D003941 1.5e-25 119.8 70 71.4
Oeu057198.3 Olea europaea HOM05D003320 ORTHO05D003941 1.5e-25 119.8 70 67.1
BcaB05g24835 Brassica carinata HOM05D003320 ORTHO05D003941 2.0e-25 119.4 70 70.0
Psat4g047520 Pisum sativum HOM05D003320 ORTHO05D003941 2.0e-25 119.4 70 64.3
HPP92_006046 Vanilla planifolia HOM05D003320 ORTHO05D003941 2.0e-25 119.4 70 68.6
BcaB05g24832 Brassica carinata HOM05D003320 ORTHO05D003941 5.7e-25 117.9 70 70.0
HanXRQChr16g0502481 Helianthus annuus HOM05D003320 ORTHO05D003941 9.7e-25 117.1 70 68.6
Lalb_Chr12g0197291 Lupinus albus HOM05D003320 ORTHO05D003941 9.7e-25 117.1 70 65.7
CAN.G1228.10 Capsicum annuum HOM05D003320 ORTHO05D003941 2.2e-24 115.9 70 64.3
Solyc03g114960.4 Solanum lycopersicum HOM05D003320 ORTHO05D003941 2.2e-24 115.9 70 68.6
Dinv17433 Davidia involucrata HOM05D003320 ORTHO05D003941 2.8e-24 115.5 69 68.1
Lsat_1_v5_gn_4_110741 Lactuca sativa HOM05D003320 ORTHO05D003941 2.8e-24 115.5 70 68.6
Peaxi162Scf00201g00346 Petunia axillaris HOM05D003320 ORTHO05D003941 6.3e-24 114.4 71 63.4
Nitab4.5_0001485g0040 Nicotiana tabacum HOM05D003320 ORTHO05D003941 8.2e-24 114.0 70 64.3
Sopen03g034040 Solanum pennellii HOM05D003320 ORTHO05D003941 8.2e-24 114.0 70 67.1
HanXRQChr09g0270371 Helianthus annuus HOM05D003320 ORTHO05D003941 2.4e-23 112.5 70 67.1
Nitab4.5_0007160g0030 Nicotiana tabacum HOM05D003320 ORTHO05D003941 3.1e-23 112.1 70 62.9
Pp3c16_23230 Physcomitrium patens HOM05D003320 ORTHO05D003941 2.0e-22 109.4 70 58.6
CBR_g42082 Chara braunii HOM05D003320 ORTHO05D003941 2.9e-21 105.5 70 58.6
CAN.G1228.9 Capsicum annuum HOM05D003320 ORTHO05D003941 8.5e-21 104.0 71 57.7
SMO228G0070 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.0e-18 97.1 69 59.4
TAR622G0583 Trochodendron aralioides HOM05D003320 ORTHO05D003941 4.0e-18 95.1 70 60.0
SMO149G0010 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 2.0e-17 92.8 66 59.1
Lj1g0020090 Lotus japonicus HOM05D003320 ORTHO05D003941 3.4e-17 92.0 69 58.0
Aa31LG4G4440 Aethionema arabicum HOM05D003320 ORTHO05D003941 5.7e-17 91.3 71 57.7
SMO201G0046 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 5.7e-17 91.3 69 56.5
SMO171G0124 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 6.3e-16 87.8 69 53.6
SMO199G0080 Selaginella moellendorffii HOM05D003320 ORTHO05D011006 1.1e-15 87.0 68 57.4
SMO274G0045 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.4e-15 86.7 68 57.4
Aa31LG4G4460 Aethionema arabicum HOM05D003320 ORTHO05D003941 5.4e-15 84.7 71 53.5
SMO077G0003 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 3.5e-14 82.0 64 54.7
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 5.9e-14 81.3 69 52.2
SMO032G0004 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 3.8e-13 78.6 65 52.3
Dinv04030 Davidia involucrata HOM05D003320 ORTHO05D003941 8.5e-13 77.4 64 51.6
SHI17487 Sapria himalayana HOM05D003320 ORTHO05D003941 7.2e-12 74.3 46 67.4
SMO032G0003 Selaginella moellendorffii HOM05D003320 ORTHO05D011006 1.8e-10 69.7 56 53.6
BcaC07g38926 Brassica carinata HOM05D003320 ORTHO05D003941 2.3e-10 69.3 32 90.6
SMO125G0002 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 3.0e-10 68.9 49 59.2
SMO274G0058 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 3.4e-09 65.5 49 55.1
SMO253G0002 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 4.4e-09 65.1 49 55.1
SMO360G0028 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 7.5e-09 64.3 49 53.1
SMO090G0001 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 3.7e-08 62.0 49 53.1
Atru.chr9.522 Acer truncatum HOM05D003320 ORTHO05D003941 1.2e-06 57.0 38 63.2
Mapoly0004s0085 Marchantia polymorpha HOM05D004809 ORTHO05D014815 1.6e-06 56.6 73 38.4
MD16G1018000 Malus domestica HOM05D002128 ORTHO05D002497 5.9e-06 54.7 72 45.8
SMO022G0002 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 5.9e-06 54.7 63 39.7


User provided reference genes

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