Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15780 Brassica carinata HOM05D003039 ORTHO05D009478 1.4e-44 182.6 91 100.0
Thhalv10007463m.g Eutrema salsugineum HOM05D003039 ORTHO05D009478 5.1e-31 137.5 82 84.1
Sp1g01510 Schrenkiella parvula HOM05D003039 ORTHO05D009478 5.1e-31 137.5 82 84.1
AL1G11782 Arabidopsis lyrata HOM05D003039 ORTHO05D009478 8.7e-31 136.7 82 82.9
A08p37670 Brassica napus HOM05D003039 ORTHO05D009478 9.6e-30 133.3 80 82.5
BraA08t35663Z Brassica rapa HOM05D003039 ORTHO05D009478 9.6e-30 133.3 80 82.5
Carub.0001s0150 Capsella rubella HOM05D003039 ORTHO05D009478 2.1e-29 132.1 82 80.5
CARHR001750 Cardamine hirsuta HOM05D003039 ORTHO05D009478 4.8e-29 131.0 82 80.5
AT1G02420 Arabidopsis thaliana HOM05D003039 ORTHO05D009478 6.2e-29 130.6 82 80.5
BcaB01g06135 Brassica carinata HOM05D003039 ORTHO05D009478 1.5e-27 125.9 80 82.5
BolC3t12581H Brassica oleracea HOM05D003039 ORTHO05D009478 1.5e-27 125.9 80 82.5
BcaB03g13512 Brassica carinata HOM05D003039 ORTHO05D009478 3.4e-27 124.8 82 80.5
Aa31LG1G10060 Aethionema arabicum HOM05D003039 ORTHO05D009478 4.5e-27 124.4 82 75.6
C03p00150 Brassica napus HOM05D003039 ORTHO05D009478 4.5e-27 124.4 80 81.2
THA.LOC104815916 Tarenaya hassleriana HOM05D003039 ORTHO05D009478 1.0e-23 113.2 82 69.5
CSS0027768 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D009478 8.7e-23 110.2 80 66.2
Cpa.g.sc932.1 Carica papaya HOM05D003039 ORTHO05D009478 5.7e-22 107.5 82 64.6
Rhsim01G0292600 Rhododendron simsii HOM05D003039 ORTHO05D009478 7.4e-22 107.1 82 63.4
Aqoxy7G03329 Aquilegia oxysepala HOM05D003039 ORTHO05D009478 1.6e-21 105.9 82 63.4
Sabra07G0066600 Salix brachista HOM05D003039 ORTHO05D009478 3.7e-21 104.8 80 61.2
Potri.007G079400 Populus trichocarpa HOM05D003039 ORTHO05D009478 4.8e-21 104.4 80 61.2
QL12p038622 Quercus lobata HOM05D003039 ORTHO05D009478 4.8e-21 104.4 82 63.4
Hma1.2p1_0143F.1_g064525 Hydrangea macrophylla HOM05D003039 ORTHO05D009478 1.4e-20 102.8 80 61.2
Sc05g0000230 Simmondsia chinensis HOM05D003039 ORTHO05D009478 1.4e-20 102.8 78 65.4
Prupe.1G549200 Prunus persica HOM05D003039 ORTHO05D009478 1.8e-20 102.4 82 59.8
TAR636G0541 Trochodendron aralioides HOM05D003039 ORTHO05D009478 1.8e-20 102.4 82 62.2
MBI19_g32692_MAGBIO Magnolia biondii HOM05D003039 ORTHO05D009478 2.4e-20 102.1 82 59.8
Atru.chr5.926 Acer truncatum HOM05D003039 ORTHO05D009478 3.1e-20 101.7 82 63.4
Haze_05093 Corylus avellana HOM05D003039 ORTHO05D009478 3.1e-20 101.7 82 61.0
TWI14G0220 Tripterygium wilfordii HOM05D003039 ORTHO05D009478 3.1e-20 101.7 80 61.2
Cfa004857 Carpinus fangiana HOM05D003039 ORTHO05D009478 4.1e-20 101.3 82 61.0
CsaV3_3G031700 Cucumis sativus L. HOM05D003039 ORTHO05D009478 5.3e-20 100.9 80 61.2
Manes.10G117700 Manihot esculenta HOM05D003039 ORTHO05D009478 6.9e-20 100.5 80 60.0
Nn2g12694 Nelumbo nucifera HOM05D003039 ORTHO05D009478 6.9e-20 100.5 82 58.5
Sed0013624 Sechium edule HOM05D003039 ORTHO05D009478 6.9e-20 100.5 80 58.8
CiPaw.07G121100 Carya illinoinensis HOM05D003039 ORTHO05D009478 1.2e-19 99.8 80 58.8
Gohir.A11G107600 Gossypium hirsutum HOM05D003039 ORTHO05D009478 1.2e-19 99.8 82 56.1
Gohir.D11G112400 Gossypium hirsutum HOM05D003039 ORTHO05D009478 1.2e-19 99.8 82 57.3
Gorai.007G120700 Gossypium raimondii HOM05D003039 ORTHO05D009478 1.2e-19 99.8 82 57.3
EL10Ac8g19260 Beta vulgaris HOM05D003039 ORTHO05D009478 1.5e-19 99.4 82 58.5
Duzib138G0793 Durio zibethinus HOM05D003039 ORTHO05D009478 1.5e-19 99.4 82 58.5
Solyc11g071670.2 Solanum lycopersicum HOM05D003039 ORTHO05D009478 1.5e-19 99.4 72 65.3
AUR62028025 Chenopodium quinoa HOM05D003039 ORTHO05D009478 2.0e-19 99.0 82 59.8
Manes.05G012004 Manihot esculenta HOM05D003039 ORTHO05D009478 2.6e-19 98.6 80 57.5
PGSC0003DMG400003011 Solanum tuberosum HOM05D003039 ORTHO05D009478 3.4e-19 98.2 82 58.5
Actinidia25867 Actinidia chinensis HOM05D003039 ORTHO05D009478 4.5e-19 97.8 72 63.9
AUR62020700 Chenopodium quinoa HOM05D003039 ORTHO05D009478 5.9e-19 97.4 82 58.5
Sopen11g029340 Solanum pennellii HOM05D003039 ORTHO05D009478 5.9e-19 97.4 72 63.9
CANSAT80G0566 Cannabis sativa HOM05D003039 ORTHO05D009478 7.6e-19 97.1 80 57.5
MD08G1216300 Malus domestica HOM05D003039 ORTHO05D009478 1.3e-18 96.3 72 62.5
ClCG10G011660 Citrullus lanatus HOM05D003039 ORTHO05D009478 1.7e-18 95.9 80 57.5
FAN08G2236 Fragaria x ananassa HOM05D003039 ORTHO05D009478 1.7e-18 95.9 82 54.9
Glyma.02G009700 Glycine max HOM05D003039 ORTHO05D009478 2.2e-18 95.5 82 53.7
RcHm_v2.0_Chr7g0230241 Rosa chinensis HOM05D003039 ORTHO05D009478 2.2e-18 95.5 82 53.7
Ciclev10019795m.g Citrus clementina HOM05D003039 ORTHO05D009478 3.8e-18 94.7 80 56.2
Thecc.01G320000 Theobroma cacao HOM05D003039 ORTHO05D009478 5.0e-18 94.4 82 58.5
MELO3C012922.2 Cucumis melo HOM05D003039 ORTHO05D009478 6.5e-18 94.0 80 57.5
Manes.04G149800 Manihot esculenta HOM05D003039 ORTHO05D009478 6.5e-18 94.0 80 56.2
Psat6g159720 Pisum sativum HOM05D003039 ORTHO05D009478 6.5e-18 94.0 80 53.8
Lj5g0022385 Lotus japonicus HOM05D003039 ORTHO05D009478 8.5e-18 93.6 80 56.2
FvH4_5g32610 Fragaria vesca HOM05D003039 ORTHO05D009478 1.4e-17 92.8 82 53.7
FAN18G3877 Fragaria x ananassa HOM05D003039 ORTHO05D009478 1.4e-17 92.8 82 53.7
Oeu051493.1 Olea europaea HOM05D003039 ORTHO05D009478 1.4e-17 92.8 80 55.0
Ca_10260_v3 Cicer arietinum L. HOM05D003039 ORTHO05D009478 1.9e-17 92.4 80 52.5
Migut.D02462 Erythranthe guttata HOM05D003039 ORTHO05D009478 1.9e-17 92.4 82 58.5
PGR031G3850 Punica granatum HOM05D003039 ORTHO05D009478 1.9e-17 92.4 80 55.0
CAN.G439.2 Capsicum annuum HOM05D003039 ORTHO05D009478 7.2e-17 90.5 72 61.1
Phvul.011G069000 Phaseolus vulgaris HOM05D003039 ORTHO05D009478 7.2e-17 90.5 80 50.0
VMungo1127G0634 Vigna mungo HOM05D003039 ORTHO05D009478 7.2e-17 90.5 80 50.0
Cc01_g08170 Coffea canephora HOM05D003039 ORTHO05D009478 9.3e-17 90.1 84 53.6
Eucgr.G01125 Eucalyptus grandis HOM05D003039 ORTHO05D009478 1.6e-16 89.4 81 54.3
Eucgr.G01126 Eucalyptus grandis HOM05D003039 ORTHO05D009478 2.7e-16 88.6 81 55.6
Medtr1g086500 Medicago truncatula HOM05D003039 ORTHO05D009478 3.6e-16 88.2 82 51.2
TPR.G3049 Trifolium pratense HOM05D003039 ORTHO05D009478 3.6e-16 88.2 80 51.2
Lj2P848T5 Lonicera japonica HOM05D003039 ORTHO05D009478 7.9e-16 87.0 70 61.4
Lalb_Chr02g0146981 Lupinus albus HOM05D003039 ORTHO05D009478 1.4e-15 86.3 77 54.5
SHI34114 Sapria himalayana HOM05D003039 ORTHO05D009478 1.8e-15 85.9 80 50.0
HPP92_015243 Vanilla planifolia HOM05D003039 ORTHO05D009478 5.1e-15 84.3 79 53.2
VMungo0647G0206 Vigna mungo HOM05D003039 ORTHO05D009478 1.1e-14 83.2 80 47.5
MSTRG.18804 Avicennia marina HOM05D003039 ORTHO05D009478 1.5e-14 82.8 72 52.8
SGA_v2.0_scaffold7G04017 Striga asiatica HOM05D003039 ORTHO05D009478 1.9e-14 82.4 80 52.5
Manes.10G117901 Manihot esculenta HOM05D003039 ORTHO05D009478 2.5e-14 82.0 74 52.7
ATR0693G157 Amborella trichopoda HOM05D003039 ORTHO05D009478 3.1e-12 75.1 68 52.9
Os03g0208600 Oryza sativa ssp. japonica HOM05D003039 ORTHO05D009478 3.8e-10 68.2 77 42.9
Zm00001eb007190 Zea mays HOM05D003039 ORTHO05D009478 7.2e-09 63.9 77 37.7
SEGI_01398 Sequoiadendron giganteum HOM05D003039 ORTHO05D009478 4.4e-06 54.7 89 30.3
SEGI_39646 Sequoiadendron giganteum HOM05D003039 ORTHO05D009478 4.4e-06 54.7 89 30.3


User provided reference genes

Program Settings